Silkworm Genome Informatics Database

Gene

KWMTBOMO15366

Annotation

reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr25(-):10434768-10441036 View in EpiBrowser

Location in the cell

Nuclear Reliability : 1.515

CDS

ATGACGCGGACCAAATCAGCACTAGGAGGAGCGGAAGGCCTGCGCCCTCCACACTTTTCACCAAGTGAAGAGTGCTCCTTCTGGAGAGCGCATTTTCCGATGGCACTGGTTCGCCGGCGTGCCGTGAGCGGTGGCACCCTGTGCCCCGTTATCGAGGATGCGCTCTCACTGCGCTCGGCGCGAAGCTCTGCAAGGGGCTGCGCTTCGAGCGGTCGAGAGTCGCCACTGTTTGCCCGGGATAGTACCGGACGATTTGTGAGCCGGAACAAGGCTGATCCGAAGACTCGGAGGAAGCGGAAGACGGTCAAACGACCAGTGACTCCCGCTCTCTCCGACTCCTCGGAGATTGAGCTCACGCCTGCCAAATTTTTGGCAGTCGAGGATGGGCCGGCGGATGCTACAGGATCATCTGCCAAAGAACGCGGTCGACAAGATCTTACGGTGACCTACGGAGAACCGGCTGTCACCACCTCGGTGCGGACCGGAGCCTTCCGCCGTAAAGAAGCTGGTCTGGTGAGAGAAGGCGAGGTCGAGCGACTAACCCGCTCCCTCACAGAAGTGGACACAATGGACCCGCGGAAGGCGGTTGAAATTTCGCTGGAAATTGTTTCCATGGTGGCGGCCAAATCAGGCTCCCTGAAGGGCACGTACGTGCGGGCCCTGAAGTGCGTGGCTGCCGCCGTGGAGAAGCTATTGGACGAGTTTCTACGACGCACTAGTACGGAGGAAGTAACCTGTCTGAGGTCGCAGCTGGAGCGACTGTTGGCAGAAAACTCAGAGCTTCGAGCGGAGGGCGTGCGGGTGCGGGAAGAGATGGCCGAAATGCGTGCATCCCTTGACGGTTTATTGGGACAGCAGGGTAGATTAGCCTCTCCGTCGCCCCCGTCTCCATCAAATGAAAGAGCGGAAAATGAGAAGGACAAGGAAATAGAGGAACTAAAGAGACGAATAGCAATCCTCGAGGCCCGCGCCTCCAAGGTTGAACGCGCAAGGCCTCCGCTGGCGCACGAGCGCCAGGCGCCTGCGCCGTCACCGTGCGACGCCTTAGCTGCACTGTCACGCACAAGGGCTGCAGGTACCAGGGTGGGTGCGGCACCTTCGGCACGCGCGTCCACCAAAGTGGCCGCGTCAAACAAGCCCGTTGGACGGCGAATGGCGGTCCAGCCCGTGAGGCCTCAGGCTGATGCTTCTGCCCCGCTCCAGCCTGCGAAGGCGGGGCCTGGCAGAAGCCGCAAGAATACAAAGGGGTGTGTGAATGCCGCCCAGTCGGCGCAACGCCCACAGCCCCGTCCACTACCTCCAGCCCCGTCCAATATGGAAGCAGCCTGGACAACGGTAGTGAAACGCGGTAGAAGGAGGGCGCTAGACGTTCCTAACCCCCGTCCCGTCCCGACGGTCAACGCTCCCCAGGTAATGGGTCGAGCAGTGACTGAGGGAAAGAGAAAGGGAGGGCGCAAGGCAAGGAAACCGCGCGCCCCGCGGTCGGCGGCTGTCGTATTGGAGCTGCTGCCGGCTGCCAAGGAAAAGGGCCTCACCTATGGGGAGGTGATGGCCCGGGCGCGCGTTAGCGTCGACGTGGATGCCATGGGCGTGGAGGGTGGCCTCCGAGTCCGGCACACCGCCAATGGGGCCCGGTTGCTGGAGTGTCCTGGTGCCAACACCAGCGCGGTCGCGGACAGGGTAGCAGCCCGGCTCCGCGAAATCCTGCCGGACCCAGAAGTGGTGCGTATAGACAGGCCCGTCAAGATGGCGGAAGTCAAAGTGACGGGCCTGGATGAATGCGCCACTAAGGAGGAGGTTGCCGCCGCCATTGCATCGCAGGGCAATTGCGCCCTTACGCAGGTAAAGGTAGGAGAGCTGCGAAGCTCTTACTCTGGAGCCTTCACTGTGTGGGCGCGTTGCCCTATGCAGGCAGCCACACTATTGGCTACGCCTCCACAAGGTCGGCCCGCCGACTCACCAGGGAGGCTACGCGTAGGCTGGGTGATAGCCCACGTGCAGCTACAGAAGGCCCGCCCCTGGCGATGCCTCAGGTGTTTCGGCACCGGGCACGGCCTCGCCAGGTGCCCGTCGGCTGTGGACCGCAGCGGTCTTTGTTTCCGCTGCGGCCAACCCGGTCACAAGGCGGGCTCCTGCACAGCCGCCACACCGCACTGCGTGCTATGCGACGCGGCGAAGCGGCGGGCCGATCATCGGGCCGGGGGCCCGTCCTGTCTTTCCGCACCCTCCTCCACAAAGAGGAGGCGTGGCGGAAAAAAGAAGAAAAATATAGAGGAAGGGCCGGCTGCCTGTGATACAGTCGGCCGGGCGCAGGATCTCCTCGTCCACACCATGGCGGAGTGGTTCATCGACATCGCGATCGTTGCGGAGCCATACTTCGTACCTCCCGACCGGGAGGATTCCTGGGCCGGAGATGTTGATGGCTCCGTGGCGATCGTGATGCGACAGTCTGCGGCGTTACCCCCCCTTGGAATGGTGGCCAGGGGATCCGGGTACGTCGTCGTTAGGGTCAACGAAACCGTCGTGATCGGGGTGTACTTCTCTCCGAACAGGAGTCTCGCTGAGTTCGAGCGGTTCCTGGGCGGGCTCGAGGCGTTGGTTCATCGCTTCGAGTCTCGCCCGGTGATACTGGCGGGGGACCTCAACGCTAAATGTACGGCGTGGGGTTCTCCCCGCACGGACTCGCGCGGCGAGTTCCTGTCGGAGTGGGCTTTCGCGACCGGCCTCTGTCTTCTGAACAGAGGTTCGGTCGCGACCTGCGTGCGGTGGAACGGGGAATCACACGTGGACGTGTCGTTCGCGTCTCCGTCCGCCGCACGCCGTGTCCGTGGCTGGCGTGTTCTCGAGGGGGCGGAGACGCTCTCGGACCATCGGTTCGTCCGATTTGAGCTCTCCGTTTCCACCTTGTTGAACGCGCCGGACGAAGACGCCCGCGGTGAGGAGGAGCTCCCGCGTAGTGCTCCCCGATCATTCCCGCGATGGGCACTGAAGCGCCTGAACAAGGTGCTTGCGGTGGAGGCGGCCACAGTGGCCGCGTGGGCGCCGATGCCCGCGCGTCTAGTGGACGTGGAGTTGGAGGCCGAATGGTTCCGGGGTACGATGCGTCGCGTCTGCGATGCTGCGATGCCCCGGGTCAGCGGTCGCGCTCCGCGTGGCGGTGCGTTTTGGTGGACGCCCGAGATCGCGCTCCTCCGAGAGGAGTGCGTGCGGGCGCGCCGCCGAAGCGCCCGCCACCGCCGTCGCCGCCTTCGCGATGCGGATTTCGCGGAGGTGGCGACCCGCCTGCATGCCGACTGCCGTCAGAAGCAGGAGGCACTGCGGCGGGCCATCGGCGAGGCCAAGTCTCAGAGCATGAAGACGCTCCTGGAGACGCTTGACCAAGATCCTTGGGGGCGCCCGTACCAAACGGTCCGCAAGAAATTGCGGCCGTGGGCGCTCCCGGTGACGGAACGTCTCCAGCCTCAGCAGCTGCGGGAGATTGTCTCCGGGCTGTTCCCGCGGATGGAGAGGGGCTTCGAGCCCCCTTCCATGGGCGCGCCACCACGCAGTAGCGTGAGCGGTGATTCCCCTGCTGAGGTGGTCCCTCCGAGCATCTCGGAGGAGGAGATTCGTGCGGCCGTGTCGAGGATGCGGAGGAAGGACGCGGCCCCCGGCCCTGACGGTGTTCACGGCCGGGTCTGGGATTTGGCCTTCGGTGCCCTTGGGGACCGACTCGTGCGGCTCTATGAAGCCTGCCTCGAGTCGGGACGGTTTCCGAAGCAGTGGAAGACGGGCAGACTTGTTCTGCTAAGGAAAGAGGGACGCCCCGCGGACTCACCTGCGGGATATCGTCCTATCGTGCTGCTGGACGAGGCGGGAAAATTGCTCGAGCGGGTGGTGGCCGCCCGCATCGTCCAGCATCTGGCGGGGGTGGGACCCGATCTGTCAGCGGAGCAGTTCGGATTCAGGGAGGGCCGCTCGACCATCGACGCGGTGATGCGCGTGCGTGCCCTCTCTGATGAGGCTGTCGGCCAGGGTGGGGTTGCACTGGCGGTGTCCCTCGACATCGCCAACGCGTTCAACACCTTGCCCTGGTCGGTGATCGCAGGGGCGCTGGAGTATCACGGCGTCCCTGCGTATCTCCGTCGGCTGATCGGGTCCTACCTCGAGGACAGGTCGGTCGTGTGCACCGGGCACGGTGGGGCGGTGCTCCGCTTCCCCGTCCAGCGCGGTGTTCCACAGGGGTCGGTCCTTGGCCCTCTCTTGTGGAACATCGGCTACGACTGGGTCCTGCGTAGCGCCCTAAGTGCTCCTCTCCCGGGTCTGAGCGTAGTTTGTTACGCGGACGACACTTTGGTCGTGGCCCAGGGGAGGGACTTGCGAGAGTCTGCCCGTCTTTCCTGCGCGGGGGTGGCCTTCGTCATCGGCAGGATTCGAAGGCTGGGTCTGGAGGTGGCGCTCGATAAATCCCAGGCCCTGTTGTTTCACGGGGCCCGGAGAGCGCCGCCTCAGGGGGCCCACCTTGTGATCGGAGGCGTTCGCGTCGAGATCGAGGCGACCGGATTACGGTACCTCGGTCTCGTACTGGACGGTCGTTGGAGCTTCCGCACTCACTTTGAGAGATTAGGTCCCCGATTGATGGCGGCCGCCGGCTCGCTGAGTCGGCTGTTGCCGAACGTCGGGGGGCCTGACGTGGTGGTGCGCCGCCTCTGGATGGATGGCACTCGCGCGATTGCGGTTAGGGCGGTTCGTGGATACCGCACCGTCTCGTTCGAGGCGGCGTGCGTGCTAGCTGGGACGCCTCCCTGGGACCTGGAAGCGGAGGCGCTCGCTGCGGATTACGCGTGGCGATGCGATCTCCGCTCCAGGGGGGAGCCGCGTCCTGGCGCGGTGGAAGTTCGAGCGCGGAAGCTTCAATCTCGGCGTGCCGTGCTCGAGGCGTGGTCTCGCCGCCTGGCGGACCCCGCCTACGGGCGACGGACCGTCGAGGCGATCCGCCCGGTCCTCTCGGACTGGGTGAATCGCGACCGAGGACGTCTCACCTTCCGGGCGACGCAGGTGCTCACGGGACACGGCTGTTTCGGTCGCTACCTGCACCTCGTCGCCCGGAGGGAGCCGACGCCGAAGTGCCACCACTGCAGTGGCTGCAACGAGGACACGGCGGAGCACACGCTCGCGTACTGCCCCGCTTTCGCGGAGCAGCGCCGCGTCCTCGTTGCAAAAATAGGACCGGACTTGTCGCTTCCGACCGTCGTGGCTACGATGCTCGGCAGCGACGAGTCCTGGCAGGCGATGCTCGACTTCTGCGAGTCCACCATCTCGCAGAAGGAGGCGGCGGAACGGGAGAGGGAGAGCTCTTCTTCCCTCTCGGCGCCGTGCCGCCGCCGTCGGGCCGGGGGTCGGAGGAGGGCGTTTGTCCAGCTCCAGCCCCTATGA

Protein

MTRTKSALGGAEGLRPPHFSPSEECSFWRAHFPMALVRRRAVSGGTLCPVIEDALSLRSARSSARGCASSGRESPLFARDSTGRFVSRNKADPKTRRKRKTVKRPVTPALSDSSEIELTPAKFLAVEDGPADATGSSAKERGRQDLTVTYGEPAVTTSVRTGAFRRKEAGLVREGEVERLTRSLTEVDTMDPRKAVEISLEIVSMVAAKSGSLKGTYVRALKCVAAAVEKLLDEFLRRTSTEEVTCLRSQLERLLAENSELRAEGVRVREEMAEMRASLDGLLGQQGRLASPSPPSPSNERAENEKDKEIEELKRRIAILEARASKVERARPPLAHERQAPAPSPCDALAALSRTRAAGTRVGAAPSARASTKVAASNKPVGRRMAVQPVRPQADASAPLQPAKAGPGRSRKNTKGCVNAAQSAQRPQPRPLPPAPSNMEAAWTTVVKRGRRRALDVPNPRPVPTVNAPQVMGRAVTEGKRKGGRKARKPRAPRSAAVVLELLPAAKEKGLTYGEVMARARVSVDVDAMGVEGGLRVRHTANGARLLECPGANTSAVADRVAARLREILPDPEVVRIDRPVKMAEVKVTGLDECATKEEVAAAIASQGNCALTQVKVGELRSSYSGAFTVWARCPMQAATLLATPPQGRPADSPGRLRVGWVIAHVQLQKARPWRCLRCFGTGHGLARCPSAVDRSGLCFRCGQPGHKAGSCTAATPHCVLCDAAKRRADHRAGGPSCLSAPSSTKRRRGGKKKKNIEEGPAACDTVGRAQDLLVHTMAEWFIDIAIVAEPYFVPPDREDSWAGDVDGSVAIVMRQSAALPPLGMVARGSGYVVVRVNETVVIGVYFSPNRSLAEFERFLGGLEALVHRFESRPVILAGDLNAKCTAWGSPRTDSRGEFLSEWAFATGLCLLNRGSVATCVRWNGESHVDVSFASPSAARRVRGWRVLEGAETLSDHRFVRFELSVSTLLNAPDEDARGEEELPRSAPRSFPRWALKRLNKVLAVEAATVAAWAPMPARLVDVELEAEWFRGTMRRVCDAAMPRVSGRAPRGGAFWWTPEIALLREECVRARRRSARHRRRRLRDADFAEVATRLHADCRQKQEALRRAIGEAKSQSMKTLLETLDQDPWGRPYQTVRKKLRPWALPVTERLQPQQLREIVSGLFPRMERGFEPPSMGAPPRSSVSGDSPAEVVPPSISEEEIRAAVSRMRRKDAAPGPDGVHGRVWDLAFGALGDRLVRLYEACLESGRFPKQWKTGRLVLLRKEGRPADSPAGYRPIVLLDEAGKLLERVVAARIVQHLAGVGPDLSAEQFGFREGRSTIDAVMRVRALSDEAVGQGGVALAVSLDIANAFNTLPWSVIAGALEYHGVPAYLRRLIGSYLEDRSVVCTGHGGAVLRFPVQRGVPQGSVLGPLLWNIGYDWVLRSALSAPLPGLSVVCYADDTLVVAQGRDLRESARLSCAGVAFVIGRIRRLGLEVALDKSQALLFHGARRAPPQGAHLVIGGVRVEIEATGLRYLGLVLDGRWSFRTHFERLGPRLMAAAGSLSRLLPNVGGPDVVVRRLWMDGTRAIAVRAVRGYRTVSFEAACVLAGTPPWDLEAEALAADYAWRCDLRSRGEPRPGAVEVRARKLQSRRAVLEAWSRRLADPAYGRRTVEAIRPVLSDWVNRDRGRLTFRATQVLTGHGCFGRYLHLVARREPTPKCHHCSGCNEDTAEHTLAYCPAFAEQRRVLVAKIGPDLSLPTVVATMLGSDESWQAMLDFCESTISQKEAAERERESSSSLSAPCRRRRAGGRRRAFVQLQPL

Uniprot

A0A0J7KQK3 A0A3S2LNH8 A0A0J7N0R3 A0A0J7KFH2 A0A0J7KRB8 A0A0J7NFZ0 + More
X1WJY4 X1WZ64 J9KT61 J9KM84 J9LA43 A0A139WNC9 A0A139WN93 A0A139WAH4

Pubmed

18362917 19820115

EMBL

LBMM01004272 KMQ92618.1 RSAL01003504 RVE40273.1 LBMM01012412 KMQ86235.1 + More
LBMM01008278 KMQ89009.1 LBMM01003988 KMQ92922.1 LBMM01005474 KMQ91485.1 ABLF02011238 ABLF02011183 ABLF02041884 ABLF02009073 ABLF02030702 ABLF02042963 ABLF02018942 ABLF02041885 ABLF02018098 KQ971310 KYB29500.1 KYB29499.1 KQ971388 KYB24913.1

Proteomes

UP000036403 UP000283053 UP000007819 UP000007266

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01421   Reprolysin
PF00098   zf-CCHC

Interpro

IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf
IPR036691   Endo/exonu/phosph_ase_sf
IPR005135   Endo/exonuclease/phosphatase
IPR000477   RT_dom
IPR024079   MetalloPept_cat_dom_sf
IPR001590   Peptidase_M12B

SUPFAM

SSF56219 SSF56219 + More
SSF57756 SSF57756

Gene 3D

3.60.10.10 3.40.390.10

ProteinModelPortal

A0A0J7KQK3 A0A3S2LNH8 A0A0J7N0R3 A0A0J7KFH2 A0A0J7KRB8 A0A0J7NFZ0 + More
X1WJY4 X1WZ64 J9KT61 J9KM84 J9LA43 A0A139WNC9 A0A139WN93 A0A139WAH4

PDB

1WDU E-value=7.40883e-09, Score=151

KEGG

105841762 no KO assigned | (RefSeq) uncharacterized LOC105841762

GO

GO:0008270 GO:0003676 GO:0003964 GO:0005524 GO:0006418 GO:0004818 GO:0005737 GO:0006424 GO:0006412 GO:0016876 GO:0043039

Length:

1804

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00465999999999999

Exp number, first 60 AAs:

0.00097

Total prob of N-in:

0.00007

outside

1 - 1804

Pi

0

Theta

0

Tajima's D

0

CLR

131.477732

CSRT

0

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree