SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15361  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA005115
Annotation
small_GTP-binding_protein_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.467 Extracellular   Reliability : 1.441
 

Sequence

CDS
ATGAATCCAGAATACGACTATTTATTCAAACTACTCCTGATTGGTGACTCTGGAGTTGGGAAATCATGTCTGTTGCTAAGATTCGCTGATGATACTTACACCGAGAGCTACATCAGTACTATTGGCGTGGACTTTAAAATTAGGACTGTAGACTTAAATGGCAAGACAATAAAGTTACAAATATGGGACACAGCTGGACAGGAGCGGTTTAGAACCATCACCTCATCATACTACAGAGGAGCACATGGAATCATCATTGTATATGATTGCACAGACCAGGATTCATTCAGCAACGTGAAACAGTGGTTAGAGGAGATTGATCGTTACGCTTGTGACAATGTGAACAAACTGCTCGTCGGTAACAAGTGTGACTTGACCACTAAAAAGGTTGTCGACTTTAGTACAGCTAAGCAATATGCGGAACAACTGGGCATTCCGTTCCTCGAGACGTCAGCGAAGAACTCTACGAACGTTGAGCAGGCGTTCATGACGATGGCGGCGGAGATCAAGGCGCGCGTGGGCCCGCCCTCCACCGGCGCCGCGCCCGCCGGCCACGTCAAGATCGATCAGGGACAACCCATCGACACCGGCAAGTCCTCGTGCTGCTGA
Protein
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYACDNVNKLLVGNKCDLTTKKVVDFSTAKQYAEQLGIPFLETSAKNSTNVEQAFMTMAAEIKARVGPPSTGAAPAGHVKIDQGQPIDTGKSSCC

Summary

EMBL
BABH01019734    AF013572    KC342472    KC342473    AAB67169.1    AGH62568.1    + More
AGH62569.1    KZ150247    PZC71866.1    GAIX01004330    JAA88230.1    KQ459324    KPJ01473.1    KK852590    KDR20725.1    KQ971354    EFA06998.1    KQ978739    KYN28717.1    GL767819    EFZ13086.1    ADTU01009938    QOIP01000011    RLU16559.1    GEZM01087377    GEZM01087376    JAV58730.1    GL451538    EFN79078.1    JR046390    AEY60184.1    AGBW02008295    OWR53800.1    KZ288292    PBC29099.1    JTDY01002177    KOB71946.1    GAMC01004145    JAC02411.1    KF859977    GAKP01007076    AHJ90460.1    JAC51876.1    GDHF01007107    JAI45207.1    CH940656    EDW58441.1    CH964272    EDW85138.1    CH933806    EDW16972.1    AAZX01004049    AK417059    BAN20274.1    GFDF01003779    JAV10305.1    GDKW01000986    JAI55609.1    ACPB03001685    ACPB03001686    GAHY01000724    JAA76786.1    KU932394    APA34030.1    AJWK01006156    AJWK01006157    KK107182    EZA55920.1    CM000364    EDX12110.1    CM000160    EDW96243.1    CH480853    EDW51585.1    CH954181    EDV48271.1    AE014297    BT046126    D84312    AAF55873.1    ACI46514.1    BAA21705.1    CH916373    EDV94578.1    KT984802    AMZ00354.1    GFDG01000748    JAV18051.1    KQ977276    KYN04435.1    KQ976455    KYM85082.1    KA645932    AFP60561.1    GFTR01003375    JAW13051.1    GBBI01000559    JAC18153.1    GBGD01002992    JAC85897.1    CH902617    EDV41904.1    GL888070    EGI68026.1    GL436037    EFN72394.1    KQ981305    KYN42898.1    KQ414894    KOC59710.1    JRES01000409    KNC31512.1    EF070546    ABM55612.1    GECU01024040    GECU01023079    JAS83666.1    JAS84627.1    OUUW01000013    SPP88229.1    CM000070    EAL27193.1    CH479198    EDW28109.1    KQ435736    KOX77028.1    KQ982686    KYQ52293.1    JXJN01022585    CCAG010005914    EZ422406    ADD18682.1    GANO01001171    JAB58700.1    GECZ01020687    JAS49082.1    GECL01003242    JAP02882.1    KQ460045    KPJ18027.1    KQ434905    KZC11285.1    GEBQ01022283    JAT17694.1    APGK01035088    BT127101    KB740923    KB632326    AEE62063.1    ENN78165.1    ERL92449.1    GL732535    EFX83971.1    GDIP01100663    LRGB01001023    JAM03052.1    KZS13821.1    UFQT01000054    SSX19062.1    GAMD01002412    JAA99178.1    GGFM01000916    MBW21667.1    GGFK01001638    MBW34959.1    ADMH02002100    GGFL01004305    ETN59196.1    MBW68483.1    AAAB01008880    EAA08609.4    APCN01002556    CH477325    EAT43493.1    JXUM01044212    JXUM01044213    JXUM01044214    GAPW01004455    KQ561391    JAC09143.1    KXJ78727.1    GBHO01030291    GBRD01012220    GDHC01012413    JAG13313.1    JAG53604.1    JAQ06216.1    GDAI01001374    JAI16229.1    GFDL01016140    JAV18905.1    AXCN02001158    GALA01000810    JAA94042.1    GDIP01183204    JAJ40198.1    CP012526    ALC47899.1    GEDC01018632    JAS18666.1    DS469595    EDO40167.1    GDIQ01249314    JAK02411.1   
Pfam
PF00071   Ras
Interpro
IPR005225   Small_GTP-bd_dom        + More
IPR001806   Small_GTPase       
IPR027417   P-loop_NTPase       
IPR025662   Sigma_54_int_dom_ATP-bd_1       
IPR001680   WD40_repeat       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR036322   WD40_repeat_dom_sf       
SUPFAM
SSF52540   SSF52540        + More
SSF50978   SSF50978       
Gene 3D
PDB
5SZH     E-value=1.96831e-90,     Score=844

Ontologies

Topology

Length:
202
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0798000000000001
Exp number, first 60 AAs:
0.07944
Total prob of N-in:
0.06162
outside
1  -  202
 
 

Population Genetic Test Statistics

Pi
179.038227
Theta
175.009763
Tajima's D
-0.672352
CLR
110.382267
CSRT
0.206489675516224
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
26822097 NSTNVEQAFMTMAAEIK 100.00 1e-06
27102218 QWIEEIDR 100.00 1e-06
28467696 FADDIDFENSVANIENR 100.00 1e-06
26822097 QYAEQIGIPFIETSAK 100.00 2e-05
26280517 VGDNVQQFDNICEVQSDK 100.00 2e-05
25044914 VGPPSIPQKPISSEAIER 100.00 2e-05
24402669 VGPNIHGFFGR 100.00 2e-05
27102218 NSTNVEQAFMTMAAEIK 100.00 2e-05
28467696 VGPNIHGFFGR 100.00 2e-05
28556443 QYAEQLGIPFLETSAK 100.00 2e-05
28556443 QYAEQLGIPFLETSAK 100.00 2e-05
26822097 TITSSYYR 100.00 3e-05
26280517 NSSYFVEWIPNNVK 100.00 3e-05
25044914 NSTMETYDDVMSTNIR 100.00 3e-05
27102218 SCIIIR 100.00 3e-05
28467696 NSSYFVEWIPNNVK 100.00 3e-05
28556443 LQIWDTAGQER 100.00 3e-05
28556443 VNTLIRPDGK 100.00 3e-05
28556443 NSTNVEQAFMTMAAEIK 100.00 4e-05
28556443 NSTNVEQAFMTMAAEIK 100.00 4e-05
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