Gene

KWMTBOMO15361  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005115

Annotation

small_GTP-binding_protein_[Bombyx_mori]

Location

Bomo_Chr25(-):10094308-10098136      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.467 Extracellular   Reliability : 1.441

CDS

ATGAATCCAGAATACGACTATTTATTCAAACTACTCCTGATTGGTGACTCTGGAGTTGGGAAATCATGTCTGTTGCTAAGATTCGCTGATGATACTTACACCGAGAGCTACATCAGTACTATTGGCGTGGACTTTAAAATTAGGACTGTAGACTTAAATGGCAAGACAATAAAGTTACAAATATGGGACACAGCTGGACAGGAGCGGTTTAGAACCATCACCTCATCATACTACAGAGGAGCACATGGAATCATCATTGTATATGATTGCACAGACCAGGATTCATTCAGCAACGTGAAACAGTGGTTAGAGGAGATTGATCGTTACGCTTGTGACAATGTGAACAAACTGCTCGTCGGTAACAAGTGTGACTTGACCACTAAAAAGGTTGTCGACTTTAGTACAGCTAAGCAATATGCGGAACAACTGGGCATTCCGTTCCTCGAGACGTCAGCGAAGAACTCTACGAACGTTGAGCAGGCGTTCATGACGATGGCGGCGGAGATCAAGGCGCGCGTGGGCCCGCCCTCCACCGGCGCCGCGCCCGCCGGCCACGTCAAGATCGATCAGGGACAACCCATCGACACCGGCAAGTCCTCGTGCTGCTGA

Protein

MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYACDNVNKLLVGNKCDLTTKKVVDFSTAKQYAEQLGIPFLETSAKNSTNVEQAFMTMAAEIKARVGPPSTGAAPAGHVKIDQGQPIDTGKSSCC

Uniprot

O16143   A0A2W1BGB4   S4PKU5   A0A194Q7H2   A0A067RAM6   D6WQP8   + More
A0A195ELA5   E9J264   A0A158NA16   A0A3L8D9J5   A0A1Y1KEV8   A0A1W4WLY2   E2BZ06   V9IIP5   A0A087ZT74   A0A212FJB3   A0A2A3ED10   A0A0L7L9L8   W8BMT9   A0A034W8I1   A0A0K8W241   B4MBH0   B4NKG6   B4KCV0   K7IUI7   R4WCZ3   A0A1L8DVI2   A0A0P4VKJ7   R4FPT4   A0A1I9WLL0   A0A1B0CC56   A0A026WIS0   A0A1W4VYT1   B4R123   B4PQD4   B4IKI1   B3P035   O18332   B4JS38   A0A165VFZ3   A0A1L8EH87   A0A195CUV4   A0A195BK59   T1PB24   A0A224XYD3   A0A023FB51   A0A069DQL4   B3LZ30   F4WC46   E2A2D1   A0A195FR01   A0A0L7QM81   A0A0L0CH35   A2I443   A0A1B6I9P5   A0A3B0KNP9   Q29B06   B4GZ91   A0A0N0U677   A0A151WWM5   A0A1A9X688   A0A1B0BYC0   D3TLV4   U5EM32   A0A1B6FFU9   A0A0V0G493   A0A1A9WY17   A0A194RKG1   A0A154PHF3   A0A1B6L2D0   J3JV35   E9G8G7   A0A0N8CTE8   A0A336LLX6   T1E878   A0A2M3YZH7   A0A2M4A2G9   W5J5D4   A0A182FQ17   A0A182YGK6   A0A182PPY8   A0A182N5R3   A0A182JPQ9   A0A182W1K0   Q7QB74   A0A182RYL3   A0A182I7U4   Q17B74   A0A023EIB6   A0A0A9X3E1   A0A0K8TPE8   A0A1Q3EUB8   A0A182Q2U9   A0A182IUJ7   T1E307   A0A0P5BKS3   A0A0M3QYM8   A0A1B6CYV0   A7S806   A0A0P5HJU3  

Pubmed

19121390    28756777    23622113    26354079    24845553    18362917    + More
19820115    21282665    21347285    30249741    28004739    20798317    22118469    26227816    24495485    25348373    17994087    20075255    23691247    27129103    27538518    24508170    17550304    9074639    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25315136    25474469    26334808    21719571    26108605    15632085    20353571    22516182    23537049    21292972    20920257    23761445    25244985    12364791    14747013    17210077    17510324    24945155    26483478    25401762    26823975    26369729    24330624    17615350   

EMBL

BABH01019734    AF013572    KC342472    KC342473    AAB67169.1    AGH62568.1    + More
AGH62569.1    KZ150247    PZC71866.1    GAIX01004330    JAA88230.1    KQ459324    KPJ01473.1    KK852590    KDR20725.1    KQ971354    EFA06998.1    KQ978739    KYN28717.1    GL767819    EFZ13086.1    ADTU01009938    QOIP01000011    RLU16559.1    GEZM01087377    GEZM01087376    JAV58730.1    GL451538    EFN79078.1    JR046390    AEY60184.1    AGBW02008295    OWR53800.1    KZ288292    PBC29099.1    JTDY01002177    KOB71946.1    GAMC01004145    JAC02411.1    KF859977    GAKP01007076    AHJ90460.1    JAC51876.1    GDHF01007107    JAI45207.1    CH940656    EDW58441.1    CH964272    EDW85138.1    CH933806    EDW16972.1    AAZX01004049    AK417059    BAN20274.1    GFDF01003779    JAV10305.1    GDKW01000986    JAI55609.1    ACPB03001685    ACPB03001686    GAHY01000724    JAA76786.1    KU932394    APA34030.1    AJWK01006156    AJWK01006157    KK107182    EZA55920.1    CM000364    EDX12110.1    CM000160    EDW96243.1    CH480853    EDW51585.1    CH954181    EDV48271.1    AE014297    BT046126    D84312    AAF55873.1    ACI46514.1    BAA21705.1    CH916373    EDV94578.1    KT984802    AMZ00354.1    GFDG01000748    JAV18051.1    KQ977276    KYN04435.1    KQ976455    KYM85082.1    KA645932    AFP60561.1    GFTR01003375    JAW13051.1    GBBI01000559    JAC18153.1    GBGD01002992    JAC85897.1    CH902617    EDV41904.1    GL888070    EGI68026.1    GL436037    EFN72394.1    KQ981305    KYN42898.1    KQ414894    KOC59710.1    JRES01000409    KNC31512.1    EF070546    ABM55612.1    GECU01024040    GECU01023079    JAS83666.1    JAS84627.1    OUUW01000013    SPP88229.1    CM000070    EAL27193.1    CH479198    EDW28109.1    KQ435736    KOX77028.1    KQ982686    KYQ52293.1    JXJN01022585    CCAG010005914    EZ422406    ADD18682.1    GANO01001171    JAB58700.1    GECZ01020687    JAS49082.1    GECL01003242    JAP02882.1    KQ460045    KPJ18027.1    KQ434905    KZC11285.1    GEBQ01022283    JAT17694.1    APGK01035088    BT127101    KB740923    KB632326    AEE62063.1    ENN78165.1    ERL92449.1    GL732535    EFX83971.1    GDIP01100663    LRGB01001023    JAM03052.1    KZS13821.1    UFQT01000054    SSX19062.1    GAMD01002412    JAA99178.1    GGFM01000916    MBW21667.1    GGFK01001638    MBW34959.1    ADMH02002100    GGFL01004305    ETN59196.1    MBW68483.1    AAAB01008880    EAA08609.4    APCN01002556    CH477325    EAT43493.1    JXUM01044212    JXUM01044213    JXUM01044214    GAPW01004455    KQ561391    JAC09143.1    KXJ78727.1    GBHO01030291    GBRD01012220    GDHC01012413    JAG13313.1    JAG53604.1    JAQ06216.1    GDAI01001374    JAI16229.1    GFDL01016140    JAV18905.1    AXCN02001158    GALA01000810    JAA94042.1    GDIP01183204    JAJ40198.1    CP012526    ALC47899.1    GEDC01018632    JAS18666.1    DS469595    EDO40167.1    GDIQ01249314    JAK02411.1   

Proteomes

UP000005204    UP000053268    UP000027135    UP000007266    UP000078492    UP000005205    + More
UP000279307    UP000192223    UP000008237    UP000005203    UP000007151    UP000242457    UP000037510    UP000008792    UP000007798    UP000009192    UP000002358    UP000015103    UP000092461    UP000053097    UP000192221    UP000000304    UP000002282    UP000001292    UP000008711    UP000000803    UP000001070    UP000078542    UP000078540    UP000095301    UP000007801    UP000007755    UP000000311    UP000078541    UP000053825    UP000037069    UP000268350    UP000001819    UP000008744    UP000053105    UP000075809    UP000092443    UP000092460    UP000092444    UP000091820    UP000053240    UP000076502    UP000019118    UP000030742    UP000000305    UP000076858    UP000000673    UP000069272    UP000076408    UP000075885    UP000075884    UP000075881    UP000075920    UP000007062    UP000075900    UP000075840    UP000008820    UP000069940    UP000249989    UP000075886    UP000075880    UP000092553    UP000001593   

PRIDE

O16143    O18332   

Pfam

PF00071   Ras

Interpro

IPR005225   Small_GTP-bd_dom        + More
IPR001806   Small_GTPase       
IPR027417   P-loop_NTPase       
IPR025662   Sigma_54_int_dom_ATP-bd_1       
IPR001680   WD40_repeat       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR036322   WD40_repeat_dom_sf       

SUPFAM

SSF52540   SSF52540        + More
SSF50978   SSF50978       

Gene 3D

2.130.10.10    

ProteinModelPortal

O16143   A0A2W1BGB4   S4PKU5   A0A194Q7H2   A0A067RAM6   D6WQP8   + More
A0A195ELA5   E9J264   A0A158NA16   A0A3L8D9J5   A0A1Y1KEV8   A0A1W4WLY2   E2BZ06   V9IIP5   A0A087ZT74   A0A212FJB3   A0A2A3ED10   A0A0L7L9L8   W8BMT9   A0A034W8I1   A0A0K8W241   B4MBH0   B4NKG6   B4KCV0   K7IUI7   R4WCZ3   A0A1L8DVI2   A0A0P4VKJ7   R4FPT4   A0A1I9WLL0   A0A1B0CC56   A0A026WIS0   A0A1W4VYT1   B4R123   B4PQD4   B4IKI1   B3P035   O18332   B4JS38   A0A165VFZ3   A0A1L8EH87   A0A195CUV4   A0A195BK59   T1PB24   A0A224XYD3   A0A023FB51   A0A069DQL4   B3LZ30   F4WC46   E2A2D1   A0A195FR01   A0A0L7QM81   A0A0L0CH35   A2I443   A0A1B6I9P5   A0A3B0KNP9   Q29B06   B4GZ91   A0A0N0U677   A0A151WWM5   A0A1A9X688   A0A1B0BYC0   D3TLV4   U5EM32   A0A1B6FFU9   A0A0V0G493   A0A1A9WY17   A0A194RKG1   A0A154PHF3   A0A1B6L2D0   J3JV35   E9G8G7   A0A0N8CTE8   A0A336LLX6   T1E878   A0A2M3YZH7   A0A2M4A2G9   W5J5D4   A0A182FQ17   A0A182YGK6   A0A182PPY8   A0A182N5R3   A0A182JPQ9   A0A182W1K0   Q7QB74   A0A182RYL3   A0A182I7U4   Q17B74   A0A023EIB6   A0A0A9X3E1   A0A0K8TPE8   A0A1Q3EUB8   A0A182Q2U9   A0A182IUJ7   T1E307   A0A0P5BKS3   A0A0M3QYM8   A0A1B6CYV0   A7S806   A0A0P5HJU3  

PDB

5SZH     E-value=1.96831e-90,     Score=844

KEGG

692559    K07874 Ras-related protein Rab-1A | (RefSeq) Rabb; small GTP-binding protein

GO

GO:0003924   GO:0005525   GO:0006886   GO:0006888   GO:0000139   GO:0000045   GO:0032482   GO:0005789   GO:0009306   GO:0032154   GO:0033500   GO:0140164   GO:1905808   GO:0030334   GO:0005794   GO:0032024   GO:1905345   GO:0008089   GO:0034067   GO:0050775   GO:0000281   GO:0007112   GO:1904115   GO:0031982   GO:0016192   GO:0005737   GO:0043025   GO:0007264   GO:0005524   GO:0006418   GO:0004818   GO:0006424   GO:0006412   GO:0016876   GO:0043039  

Length:

202

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0798000000000001

Exp number, first 60 AAs:

0.07944

Total prob of N-in:

0.06162

outside

1  -  202

 

 

Pi

179.038227

Theta

175.009763

Tajima's D

-0.672352

CLR

110.382267

CSRT

0.206489675516224

Interpretation

Uncertain