Silkworm Genome Informatics Database

Gene

KWMTBOMO15356

Pre Gene Modal

BGIBMGA005079

Annotation

PREDICTED:_uncharacterized_protein_LOC106129316_[Amyelois_transitella]

Location

Bomo_Chr25(+):10015637-10016503 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.401

CDS

ATGGAACATGAAATATTTATAACCAAGCACACTGTACAAGAAAAAACATTTTATTTAAAAGTACTTTGGAGATGGAATCCTGAAGAACTATTTTATATTTATATCAATAAAGACAATTCAAGTTGGTCTGGTGAATATTCCATTCAATCAGCAAATAAATATAGAGAAGAGTATACTGATGATTCTGAGGAAGAATTTATCGAAAATGTTAAAAGAGCATTTAGACAAAATAACAGTGACTTTGACTACGACTTTAGTTCACTTAAAGATAAATCATCTTCAAAATTTACATGGAAAAAAAGATTTGAAGGAAAAAAAGTTATACAAGGTACAGTAAATGTAGTTTGGGATGATGTACCCACAACCAGGGAGACTTTAATTGATAATTTGTTACAAGAAAACGAACAATTAAAAACAACCATTAGAAATAATAAAGTAAAAACTAAAGCTCAAGAAGAAGAATTAGAAAAGTGTAAAAACACTATAGAGAAATTTGTAGACATCAAGACAACAGTTGAAGAAACATTATATGCAAAGTTTGTCCAAATTTTGAATGAAAAGAAGAAAAGAATAAAATTGTTACAAGAATCTTTGCAAAAATTGGGAGTATCAAATGTTTATAATTCAGAAAGTGAATAA

Protein

MEHEIFITKHTVQEKTFYLKVLWRWNPEELFYIYINKDNSSWSGEYSIQSANKYREEYTDDSEEEFIENVKRAFRQNNSDFDYDFSSLKDKSSSKFTWKKRFEGKKVIQGTVNVVWDDVPTTRETLIDNLLQENEQLKTTIRNNKVKTKAQEEELEKCKNTIEKFVDIKTTVEETLYAKFVQILNEKKKRIKLLQESLQKLGVSNVYNSESE

Uniprot

H9J6D7 A0A2A4J5H2 A0A2H1WFX1 A0A1E1WA58 A0A194RL16 A0A194Q7H7 + More
A0A2W1BG35 A0A2W1B9H3 A0A2I4C7J0 A0A2I4C7I7 A0A2I4C7J1 A0A3B4DM85 A0A1S3PJP2 A0A1S3PJI5 A0A1Y1HQH5 A0A3Q2V6L6 A0A1A7Z6B4 A0A3Q3A677 A0A3B4FYU9

Pubmed

19121390 26354079 28756777 24865297

EMBL

BABH01019741 NWSH01003255 PCG66680.1 ODYU01008408 SOQ51980.1 GDQN01007303 + More
JAT83751.1 KQ460045 KPJ18020.1 KQ459324 KPJ01478.1 KZ150517 PZC70623.1 KZ150247 PZC71858.1 DF236975 GAQ79241.1 HADW01003235 HADX01015786 SBP38018.1

Proteomes

UP000005204 UP000218220 UP000053240 UP000053268 UP000192220 UP000261440 + More
UP000087266 UP000054558 UP000264840 UP000264800 UP000261460

PRIDE

H9J6D7

Pfam

PF06632 XRCC4

Interpro

IPR010585 DNA_repair_prot_XRCC4 + More
IPR009089 XRCC4_N_sf

SUPFAM

SSF50809 SSF50809

ProteinModelPortal

H9J6D7 A0A2A4J5H2 A0A2H1WFX1 A0A1E1WA58 A0A194RL16 A0A194Q7H7 + More
A0A2W1BG35 A0A2W1B9H3 A0A2I4C7J0 A0A2I4C7I7 A0A2I4C7J1 A0A3B4DM85 A0A1S3PJP2 A0A1S3PJI5 A0A1Y1HQH5 A0A3Q2V6L6 A0A1A7Z6B4 A0A3Q3A677 A0A3B4FYU9

KEGG

101740898 K10886 DNA-repair protein XRCC4 | (RefSeq) DNA repair protein XRCC4-like

PATHWAY

03450 Non-homologous end-joining - Bombyx mori (domestic silkworm)

GO

GO:0003677 GO:0005634 GO:0006302 GO:0006310 GO:0005506 GO:0016705 GO:0031418 GO:0004222 GO:0031012 GO:0008233

Length:

212

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00015

Exp number, first 60 AAs:

0.00015

Total prob of N-in:

0.07046

outside

1 - 212

Pi

155.875722

Theta

135.693743

Tajima's D

0.467287

CLR

0

CSRT

0.508874556272186

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics