Gene

KWMTBOMO15345

Pre Gene Modal

BGIBMGA005125

Annotation

DNApol-iota_[Operophtera_brumata]

Location

Bomo_Chr25(-):9759482-9761426      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.019

CDS

ATGGAATCGAGCTGTTCCACTTGTAACGAGATTGATGGTGAACATTTCAAGAGCATTATACATATTGATTTAGATTGTTTCTACGCGCAAGTGGAAATGGTGCGAAACCCCGAACTCCGTGATGTACCGCTCGGTATCCAACAGAAGAACATTGTAGTGACGAGTAATTACGAGGCAAGGAACTACGGAGTTAGTAAATGTATGCTCGTTACTGACGCACTTAAGGTTTGTCCAAATTTGAAACTTGTAAATGGTGAAGATTTACATAGTTACAGAACTGCATCAGGCAAGGTGTTTTTAGTGTTGCAAGGTTGGCGGTGTCCCGTTGAAAAACTTGGAATGGATGAAAATTTCATTGATGTGACAAGTCTTGTGGAGGAAAAATTAAAAAATGCAAACTTAAATGATCTCATAGTTATGGGCCAGCTATATAGTGAACCGAGTGCTGAATGTCCATGTGGTTGTCACAACAGACTAAAAATAGCATCACAAATTGCAAATGAAATGAGGAAGAAAATTTATGATGAGTTGGGTTACACAACTTGTGCCGGAATAGCTCATAACAAGTTGTTGGCTAAACTAATTTGTCCCCTGCATAAACCTAACAACCAGACCACAATATTTCCTCAACATGGAGCCAATTACATGTCTACTCTGACCAGTGTCCGGTCCATTCCAAGTATTGGCTCCAAAACAATGGAAGCATTAATTTCTCAGAAGATAATATCGGTCAGTGACTTACAAGAAGCTCCTTTAGAGATTCTGAAAAAACATTTCAGCAGTGATATGGCTGTTAGATTGAAAAGTTTAAGTTTAGGAGAGGATAATACTCCAGTAAAGCAAAGTGGAAAACCTCAGAGCATAGGATTGGAGGATAGTTTCAAAACTGTAAGTGTAAAAAGTGAGGTGGAGGATAAATTCTCTGCTCTGCTACAGAGATTATTAGTACTTGTAAGAGAAGATGGTCGCATTCCAGTTTCGGTGAGGGTAACTTTACGTAAGAAGGATGCTAAAAGATTGAGCAGTCATAGGGAATCAAGACAAAGTCAGATTTCTCCATCTATCTTCACACTAAGCAGTGGTGTGTTGACTGTAACAGAAGCTGGTCAACAAAAATTGATGGCCATAATAATGAGATTATTCACTAAACTTGTTGATTTATCTAAACCATTCCATTTGACTTTGGTGGGACTAGCGTTTACCAAGTTCCAAGAACGAATGACAGGCAGGAGTTCCATTGTAAACTACTTAATGAATGACATTTCTGTTCAGTCAGTTCTCAACTTACAAAATGATGGTGACGCTTCAATTACTTCAATGGACTATTCTGCTGCATCTCCAAGTAGCAGTACCACTACAGATCTCTCTGATGCAGAAATTGAGCCATCACCTAAAAAACCTAAGAAAGTTAATTGGATTGCAAAGAAGCGGTGCCTAGCCAAGGAAGAAGTTGCATCACCAAGTAAACTGAAAGTTGGTGAACTTAGACTTAATTCTAAAGAGCTAGAAAAAGTCTCAGAGTTGAGGTTAAATTCAAGAGATCGATCTCTTACTCCTCGAGCAAGCCCCGCTAAAGACAACTTTTCTGATGCTTCAGATTCTATGAAGGACCTAGAAGATGGAGCTTGTAATGATTGTCCAAGTTATGTTGATAAAGAAGTGTTTAGTGCTCTCCCTGATGACATGCAACAGGAACTTAAATCAATGTGGAAGAACCCTACTAGTTCTGAGAAAACCAGAAGTAGTCCAAGAAAGAACAAATCAAAACCCAACTCTATAATGAAATATTTTGTTCCACAAAAATAG

Protein

MESSCSTCNEIDGEHFKSIIHIDLDCFYAQVEMVRNPELRDVPLGIQQKNIVVTSNYEARNYGVSKCMLVTDALKVCPNLKLVNGEDLHSYRTASGKVFLVLQGWRCPVEKLGMDENFIDVTSLVEEKLKNANLNDLIVMGQLYSEPSAECPCGCHNRLKIASQIANEMRKKIYDELGYTTCAGIAHNKLLAKLICPLHKPNNQTTIFPQHGANYMSTLTSVRSIPSIGSKTMEALISQKIISVSDLQEAPLEILKKHFSSDMAVRLKSLSLGEDNTPVKQSGKPQSIGLEDSFKTVSVKSEVEDKFSALLQRLLVLVREDGRIPVSVRVTLRKKDAKRLSSHRESRQSQISPSIFTLSSGVLTVTEAGQQKLMAIIMRLFTKLVDLSKPFHLTLVGLAFTKFQERMTGRSSIVNYLMNDISVQSVLNLQNDGDASITSMDYSAASPSSSTTTDLSDAEIEPSPKKPKKVNWIAKKRCLAKEEVASPSKLKVGELRLNSKELEKVSELRLNSRDRSLTPRASPAKDNFSDASDSMKDLEDGACNDCPSYVDKEVFSALPDDMQQELKSMWKNPTSSEKTRSSPRKNKSKPNSIMKYFVPQK

Uniprot

H9J6I3   A0A0L7KZA2   A0A2W1B7C9   A0A2A4ISL6   S4PY61   A0A2H1WQY3   + More
A0A212EZQ1   A0A0N0PBG9   A0A194Q7X2   A0A1Y1MM18   A0A2Z5U5Y4   A0A067QRT1   A0A1B0CMT6   A0A1L8DWK2   A0A1L8DX51   A0A1B0GMD8   A0A0T6B000   A0A2J7QAX6   A0A154P3W2   A0A0N0BH96   B0XFI8   A0A2J7QAX1   A0A1Q3EXE3   A0A2A3EJ27   A0A026WSW5   E9J8Q1   A0A0L7R458   A0A310SHX1   A0A087ZQ84   Q175B7   A0A1S4FEH5   D6WQ70   A0A0J7KCT7   A0A195F1D5   A0A182GUP6   A0A182J948   A0A151XG28   F4WAV2   A0A151IH75   A0A195BWZ1   A0A158P3L5   A0A232FD27   B4NJ96   A0A1J1HUM8   A0A151ITB9   A0A2M4CIM7   A0A2M4CIB5   A0A2M4CIG5   A0A182FST1   B3LZW8   A0A1B6LND2   E2BNV5   A0A182SUQ7   K7J498   A0A182W2R3   A0A182RYA4   B4HLP4   A0A182XVI2   A0A182LV96   A0A034W883   A0A1A9VDQ2   B3NZW5   Q9VHV1   B4PSM0   A0A1W4W3C8   A0A1B0B2Z9   A0A240SWM0   A0A1A9ZSU6   A0A1B0FL96   B4K963   B4JF50   A0A0Q9X6P9   A0A182QW71   A0A0A1XEP7   A0A0M4ED21   A0A0L0BY70   A0A1A9W5P7   A0A1Q3EXL0   Q299A7   B4G4Y8   T1PJF1   B4M161   A0A1I8M628   A0A3B0JL79   A0A182JQC9   A0A1I8NLT7   A0A1I8NLU4   A0A182P580   A0A182XE77   A0A182TYG8   A0A182HJ46   A0A182LCA7   Q7QBI8   W8C8V8  

Pubmed

19121390    26227816    28756777    23622113    22118469    26354079    + More
28004739    26760975    24845553    24508170    30249741    21282665    17510324    18362917    19820115    26483478    21719571    21347285    28648823    17994087    20798317    20075255    25244985    25348373    10731132    11297519    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    18057021    25830018    26108605    15632085    23185243    25315136    20966253    12364791    14747013    17210077    24495485   

EMBL

BABH01019770    JTDY01004191    KOB68475.1    KZ150250    PZC71829.1    NWSH01007896    + More
PCG62765.1    GAIX01003848    JAA88712.1    ODYU01010346    SOQ55386.1    AGBW02011239    OWR46986.1    KQ460973    KPJ10056.1    KQ459324    KPJ01489.1    GEZM01030476    GEZM01030474    JAV85525.1    FX985786    BBA93673.1    KK853013    KDR12521.1    AJWK01019157    GFDF01003258    JAV10826.1    GFDF01003259    JAV10825.1    AJVK01024438    AJVK01024439    LJIG01016417    KRT80664.1    NEVH01016310    PNF25732.1    KQ434809    KZC06606.1    KQ435756    KOX75918.1    DS232930    EDS26826.1    PNF25733.1    GFDL01015085    JAV19960.1    KZ288229    PBC31727.1    KK107109    QOIP01000008    EZA59135.1    RLU19793.1    GL769036    EFZ10839.1    KQ414658    KOC65662.1    KQ759887    OAD62130.1    CH477403    EAT41670.1    KQ971354    EFA06118.2    LBMM01009440    KMQ88137.1    KQ981880    KYN33914.1    JXUM01089599    JXUM01089600    KQ982174    KYQ59317.1    GL888053    EGI68708.1    KQ977636    KYN01158.1    KQ976394    KYM93149.1    ADTU01008200    NNAY01000441    OXU28369.1    CH964272    EDW84927.1    CVRI01000021    CRK91775.1    KQ981039    KYN10141.1    GGFL01000917    MBW65095.1    GGFL01000914    MBW65092.1    GGFL01000915    MBW65093.1    CH902617    EDV44158.1    GEBQ01014898    JAT25079.1    GL449507    EFN82638.1    AAZX01006624    AAZX01007448    CH480815    EDW43071.1    AXCM01000024    GAKP01008034    GAKP01008033    JAC50919.1    CH954181    EDV49963.1    AE014297    AY051762    AB049434    AAF54198.1    AAK93186.1    AAN14307.1    AHN57226.1    BAB15800.1    CM000160    EDW96480.1    KRK03171.1    JXJN01007738    CCAG010013281    CH933806    EDW14476.1    KRG01029.1    CH916369    EDV93331.1    KRG01028.1    AXCN02001613    GBXI01015438    GBXI01004855    JAC98853.1    JAD09437.1    CP012526    ALC45628.1    JRES01001160    KNC24977.1    GFDL01015107    JAV19938.1    CM000070    EAL27796.1    KRT00292.1    CH479179    EDW24654.1    KA648240    AFP62869.1    CH940650    EDW67472.1    OUUW01000007    SPP83074.1    APCN01002124    AAAB01008879    EAA08441.5    GAMC01002709    GAMC01002708    JAC03847.1   

Proteomes

UP000005204    UP000037510    UP000218220    UP000007151    UP000053240    UP000053268    + More
UP000027135    UP000092461    UP000092462    UP000235965    UP000076502    UP000053105    UP000002320    UP000242457    UP000053097    UP000279307    UP000053825    UP000005203    UP000008820    UP000007266    UP000036403    UP000078541    UP000069940    UP000075880    UP000075809    UP000007755    UP000078542    UP000078540    UP000005205    UP000215335    UP000007798    UP000183832    UP000078492    UP000069272    UP000007801    UP000008237    UP000075901    UP000002358    UP000075920    UP000075900    UP000001292    UP000076408    UP000075883    UP000078200    UP000008711    UP000000803    UP000002282    UP000192221    UP000092460    UP000092443    UP000092445    UP000092444    UP000009192    UP000001070    UP000075886    UP000092553    UP000037069    UP000091820    UP000001819    UP000008744    UP000008792    UP000095301    UP000268350    UP000075881    UP000095300    UP000075885    UP000076407    UP000075902    UP000075840    UP000075882    UP000007062   

PRIDE

H9J6I3    Q9VHV1   

Pfam

PF00817   IMS        + More
PF11799   IMS_C
PF14377   UBM

Interpro

IPR001126   UmuC        + More
IPR017961   DNA_pol_Y-fam_little_finger       
IPR036775   DNA_pol_Y-fam_lit_finger_sf       
IPR025527   HUWE1/Rev1_UBM       

SUPFAM

SSF100879   SSF100879       

Gene 3D

3.30.1490.100    

ProteinModelPortal

H9J6I3   A0A0L7KZA2   A0A2W1B7C9   A0A2A4ISL6   S4PY61   A0A2H1WQY3   + More
A0A212EZQ1   A0A0N0PBG9   A0A194Q7X2   A0A1Y1MM18   A0A2Z5U5Y4   A0A067QRT1   A0A1B0CMT6   A0A1L8DWK2   A0A1L8DX51   A0A1B0GMD8   A0A0T6B000   A0A2J7QAX6   A0A154P3W2   A0A0N0BH96   B0XFI8   A0A2J7QAX1   A0A1Q3EXE3   A0A2A3EJ27   A0A026WSW5   E9J8Q1   A0A0L7R458   A0A310SHX1   A0A087ZQ84   Q175B7   A0A1S4FEH5   D6WQ70   A0A0J7KCT7   A0A195F1D5   A0A182GUP6   A0A182J948   A0A151XG28   F4WAV2   A0A151IH75   A0A195BWZ1   A0A158P3L5   A0A232FD27   B4NJ96   A0A1J1HUM8   A0A151ITB9   A0A2M4CIM7   A0A2M4CIB5   A0A2M4CIG5   A0A182FST1   B3LZW8   A0A1B6LND2   E2BNV5   A0A182SUQ7   K7J498   A0A182W2R3   A0A182RYA4   B4HLP4   A0A182XVI2   A0A182LV96   A0A034W883   A0A1A9VDQ2   B3NZW5   Q9VHV1   B4PSM0   A0A1W4W3C8   A0A1B0B2Z9   A0A240SWM0   A0A1A9ZSU6   A0A1B0FL96   B4K963   B4JF50   A0A0Q9X6P9   A0A182QW71   A0A0A1XEP7   A0A0M4ED21   A0A0L0BY70   A0A1A9W5P7   A0A1Q3EXL0   Q299A7   B4G4Y8   T1PJF1   B4M161   A0A1I8M628   A0A3B0JL79   A0A182JQC9   A0A1I8NLT7   A0A1I8NLU4   A0A182P580   A0A182XE77   A0A182TYG8   A0A182HJ46   A0A182LCA7   Q7QBI8   W8C8V8  

PDB

5KT7     E-value=1.44476e-83,     Score=790

KEGG

101740307    K03510 DNA polymerase iota [EC:2.7.7.7] | (RefSeq) DNA polymerase iota

PATHWAY

03460    Fanconi anemia pathway - Bombyx mori (domestic silkworm)

GO

GO:0003684   GO:0006281   GO:0016021   GO:0003887   GO:0019985   GO:0007608   GO:0016020   GO:0006436   GO:0004812   GO:0006418   GO:0004222   GO:0031012   GO:0008233  

Length:

601

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01622

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00183

outside

1  -  601

 

 

Pi

48.80834

Theta

18.705044

Tajima's D

-1.030711

CLR

708.352947

CSRT

0.137243137843108

Interpretation

Uncertain