SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15344  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA005076
Annotation
PREDICTED:_conserved_oligomeric_Golgi_complex_subunit_2_[Amyelois_transitella]
Full name
Conserved oligomeric Golgi complex subunit 2      
Alternative Name
Component of oligomeric Golgi complex 2
LdlCp-related protein
Location in the cell
Nuclear   Reliability : 3.353
 

Sequence

CDS
ATGGAATGTGAATCGACTGAATTTAGCTTGCCTCCGGCCCCTCGAGGCTTGTGTTTTGATCGAAATGATTTCGTGAAGACAAATTTTTCTGTAGATAACTTCTTAGCAGAACATCAGGATGTGGCTTCACTGGAAACTATGAGGGATGACCTAGGCATGTATTTAAAAGTTCTCCGATTGGCTATGATAGAGTTAATAAATAAGGACTATGCCAATTTTGTTAATTTATGTGCAACATTAATTGGCTTTGACAAAGCTATAGCTAAAGTTCATGTGCCATTAGAACAATTAAACAAGGATGTTCTTAATGTAAAACGAAGTCTAGAGGATGCTATGAAAGAAACTTCCATGTGGATGAGTCAGCGGCACAACTTACAAAGTAAAAAGCAGTTACTGAAATATTATAGCCAAACAATAAACAGTCTTAACAGATTAGATAATGTTTTACAAAATATTACTGAACAGAAAATGTATGATAAAATTGTACTAGCCGATAGAGCTGCTATGCAGTATAATCAGTTAAAGTTTACCATAAAAAAATGTGACAATTTAGTAAAACTTGAACACAAAACACAATTTACTTATATTGAAGAAACACTCGTAAGGACCTTAAATGAATTGCTATTCCAATTCTGGAATGATGGAGATGAAGAAAATCTAACAAAAGCATTATTAACATTAGCAACTCTAGACCGGGTCGATGATGTCGAGAAATTATTAAGAAAACAGGCAGTGGCTCCATTACTACAGGACATTATCAATGAATCAGCTTTGCAGAGAAACAAAGATGGCTTGTCAGGAATATATGATCTGGTCTTAGCACTTTTGGATACAAAATTTAAATTGCTACTTAGTATTACACAACATTCCAAACTGGTATTTCTTTATAAGAAATATAGGTTCCTCGTTAATTCTTTTTGGTGTGAAGTCGAGAATAGAATTGAAATTAATTTATCATCAATATTTGCACCTGGCAATCCTCAAACTTTTTTCAAAAGATATAATGAAAGTATGGAATTTATAAACAAATTTGAACGATATTGCCTTGCCGAAAATACAGTGAAACTATTTCGCGAAACTATAGAATATAAGAGTTTCAAGAGAAGATGGAATCTCCCAGTTTACTTCCAGATAAGATTCCAAGAAATTGCTGGTAGCTATGAGGGCTCACTACATAATGATCCCTTTATTGAATCCAGTGATGGTTTCATTTTGAAGCAGACATATAAATGTTGGTTAGCATTACAAGACTGTTGGTCTGATGGCATTTACATAAAAGCACTGGGACATAAATTCTGGAAACTCTCATTACAGTTGATATCGAGATACGCTTCGTGGGCTAGCTCTTATTGTTCTCAGAAAGCATCATTACGCAAAGCAGAAACATTGAATGTAAATAAAAAATTGATAAACAACAGCATAAACATTTATGTTGACATCCACAACCTGGTGGAACGCCTGCCGTTGTTGCTGCAATTGGTCGAGTCGAAATTAGAGATTGAAAATAACGAATTACTTAGAAAGAGTTTGCAGTCTTCCAAGGAGTCTTTGAGAGCAGTTCACAAGAGAATCAAAGAATTTATTATAAATGAATTGTATGATAATTTTAATGTACAGTTAAAACAAGTAAGCGATATACCGAGGTTGTACAGAAAAACTAACAGAAGTGTACCTTCCAAACCATGTGCGTACATAGACACCGTGTCCAATGCCTTAAGAGAATTTAATGAAGATGCCTCTAAGAGATTGGATCAGTCGAATTTGTCCGAATTATACGAGGATTTATTTAGTGTTTTGACCGTTTCGTATCACAGGAATGTGGAAGACATTTTAACATCTGTTCAGAAAACTGAGGATTCACTGAGAAGACTGAAACAAATCCGGGAAGTGGCGTCACAGCAAAACCCCGAGATCGGTATCACAGACGGCGATAAAATTCGCCTTCAACTAAAAGTAGATGTCATTTCTTATGGGAAAATAGCAGAATCGTTAAAACTCGATGTACATAGTGTTCAGAAATACACAGATTTATCCAATATGGTTACAGATGCTGTAAAAAATATAGAAATTAAATGA
Protein
MECESTEFSLPPAPRGLCFDRNDFVKTNFSVDNFLAEHQDVASLETMRDDLGMYLKVLRLAMIELINKDYANFVNLCATLIGFDKAIAKVHVPLEQLNKDVLNVKRSLEDAMKETSMWMSQRHNLQSKKQLLKYYSQTINSLNRLDNVLQNITEQKMYDKIVLADRAAMQYNQLKFTIKKCDNLVKLEHKTQFTYIEETLVRTLNELLFQFWNDGDEENLTKALLTLATLDRVDDVEKLLRKQAVAPLLQDIINESALQRNKDGLSGIYDLVLALLDTKFKLLLSITQHSKLVFLYKKYRFLVNSFWCEVENRIEINLSSIFAPGNPQTFFKRYNESMEFINKFERYCLAENTVKLFRETIEYKSFKRRWNLPVYFQIRFQEIAGSYEGSLHNDPFIESSDGFILKQTYKCWLALQDCWSDGIYIKALGHKFWKLSLQLISRYASWASSYCSQKASLRKAETLNVNKKLINNSINIYVDIHNLVERLPLLLQLVESKLEIENNELLRKSLQSSKESLRAVHKRIKEFIINELYDNFNVQLKQVSDIPRLYRKTNRSVPSKPCAYIDTVSNALREFNEDASKRLDQSNLSELYEDLFSVLTVSYHRNVEDILTSVQKTEDSLRRLKQIREVASQQNPEIGITDGDKIRLQLKVDVISYGKIAESLKLDVHSVQKYTDLSNMVTDAVKNIEIK

Summary

Description
Required for normal Golgi morphology and function.
Subunit
Component of the conserved oligomeric Golgi complex which is composed of eight different subunits and is required for normal Golgi morphology and localization.
Similarity
Belongs to the COG2 family.
Keywords
Complete proteome   Golgi apparatus   Membrane   Protein transport   Reference proteome   Transport  
Feature
chain  Conserved oligomeric Golgi complex subunit 2
EMBL
BABH01019770    GDQN01007135    JAT83919.1    ODYU01010346    SOQ55385.1    NWSH01007896    + More
PCG62766.1    KZ150250    PZC71830.1    KQ460973    KPJ10057.1    AGBW02011239    OWR46985.1    KK852777    KDR16768.1    NEVH01010582    PNF32231.1    GFDF01003547    JAV10537.1    GL443520    EFN61983.1    GEDC01029245    GEDC01020422    JAS08053.1    JAS16876.1    KQ981993    KYN31068.1    GL768112    EFZ12190.1    KQ977505    KYN02267.1    KQ976730    KYM76460.1    KK107405    EZA51235.1    ADTU01027870    QOIP01000014    RLU14973.1    GL888679    EGI58493.1    GBYB01000477    GBYB01000479    GBYB01003005    JAG70244.1    JAG70246.1    JAG72772.1    CH477186    EAT49001.1    GBYB01000480    JAG70247.1    GAPW01000366    JAC13232.1    GGFK01006665    MBW39986.1    GL451254    EFN79609.1    GGFJ01002599    MBW51740.1    NNAY01000211    OXU29997.1    GGFJ01002598    MBW51739.1    GGFK01005654    MBW38975.1    GGFJ01002600    MBW51741.1    GGFM01002732    MBW23483.1    ATLV01011899    ATLV01011900    KE524732    KFB36169.1    KQ414735    KOC62262.1    GGFM01002761    MBW23512.1    ADMH02001520    ETN62215.1    AAZX01003847    GECZ01020453    JAS49316.1    AXCN02000227    GECU01024610    GECU01019205    JAS83096.1    JAS88501.1    GEBQ01009280    JAT30697.1    KQ435716    KOX79043.1    GFDL01010816    JAV24229.1    KQ435078    KZC14477.1    DS231993    EDS30804.1    GGFM01002901    MBW23652.1    AXCM01007073    AAAB01008844    EAA05978.4    APCN01003107    GDHC01004652    JAQ13977.1    GBHO01027223    GBRD01014923    GBRD01014922    JAG16381.1    JAG50903.1    KZ288215    PBC32619.1    GBGD01000714    JAC88175.1    NEDP02000201    OWF56425.1    GECL01002702    JAP03422.1    GBBI01004587    JAC14125.1    KQ417037    KOF94072.1    UFQT01003074    SSX34510.1    GDKW01000760    JAI55835.1    UFQT01003844    SSX35308.1    UFQS01001157    UFQT01001157    SSX09292.1    SSX29194.1    JH816634    EKC22030.1    KB201891    ESO93530.1    JXJN01004067    CP012526    ALC47493.1    CVRI01000020    CRK90772.1    ACPB03006289    JXUM01152984    KQ571596    KXJ68153.1    AGTP01017345    AGTP01017346    CH480815    EDW42058.1    AF132535    AF132532    AF132533    AF132534    AE014297    AY070962    CM000070    EAL27058.2    GFTR01007603    JAW08823.1    CH902623    EDV30329.1    CH479186    EDW38821.1    CH954181    EDV49008.1    CH916374    EDV91010.1    CH933806    EDW16786.1   
Pfam
PF06148   COG2        + More
PF12022   DUF3510
PF07776   zf-AD
PF00096   zf-C2H2
Interpro
IPR024602   COG_su2_N        + More
IPR024603   COG_complex_COG2_C       
IPR009316   COG2       
IPR012934   Znf_AD       
IPR036236   Znf_C2H2_sf       
IPR013087   Znf_C2H2_type       
SUPFAM
SSF57667   SSF57667       

Ontologies

Topology

Subcellular location
Golgi apparatus membrane  
Length:
691
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00917000000000001
Exp number, first 60 AAs:
0.00015
Total prob of N-in:
0.00052
outside
1  -  691
 
 

Population Genetic Test Statistics

Pi
195.953061
Theta
150.116734
Tajima's D
0.299422
CLR
0.376601
CSRT
0.451427428628569
Interpretation
Uncertain
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