Gene

KWMTBOMO15341  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005126

Annotation

PREDICTED:_tryptophan--tRNA_ligase?_cytoplasmic_[Amyelois_transitella]

Location

Bomo_Chr25(-):9670715-9685245      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.929

CDS

ATGGCAGAAGATAAAACTATCAATATAGCAATAGCGGAGGATGAGGACTTCGTGGATCCATGGACTGTTACTGGAAAGTCAGACACCGGCATTGATTATGACAAACTAATAAAAAGGTTTGGCAGTCAGAAAATTGATGATGAACTTATACAGCGATTTGAAAAAGTAATAGGAAGGAAAGCTCATCATCTGCTGAGACGTGGAATATTCTTTTCACATAGAGACCTAAATGTAATACTTAATTTACATGAAGCGGGAAAGAAATTTTACTTGTACACTGGAAGAGGGCCATCATCAGACAGTATGCATCTCGGACATATGATCCCTTTTATGTTTACTAAATGGTTACAAGATGTTTTCAATGTACCTCTAATTATTCAACTGACAGATGATGAGAAGGTACTGTGGAGAGATATAAAAGTTGAAGATGCAAGGAAAATGGCTTATAATAATGCCAAAGATATTATAGCAATTGGATTTGATCCTTCAAATACATTTATATTTAATGATTTGGATTTTATTGGGCAGTGCCCAGCTTTTTACCAGAACATGTTAAGGATACAGAAATGTGTCACATACAACCAAGTAAAGGGCATATTCGGTTTCGGTGATTCTGATGTCATTGGCAAGATTACATTCCCATCGATTGAAGCCGCTCCAGCCTTTTCCACCACTTTTCCATTTATTTTTGAAAATAAAATTGTACATTGTTTGGTTCCGTGCGCGATCGATCAGGATCCATATTTCCGTATGACGCGAGATGTGGCCGTTCGTCTCAAATTGCCCAAACCTTCTCTGATACACTCAACATTCTTGCCGGCTCTTCAAGGCGCCCAGCACAAAATGTCGGCTAGTGATTGTAACGCTTCGATATTCTTGAACGACACTCCGAAGCAAATAAAAAATAAGATAAACAAATATGCGTTTTCGGGAGGTCAAATCACAGTGGAGGAGCACAGAGAGAAGGGTGGTAACACTGATGTGGATATTTCTTACAAGTATTTAGTTTTCTTCCTTGAAGACGACGACAAACTCGCTGAGATCAAGAAGTCTTACGAGTCAGGACAGATGTTAACAGGAGAACTTAAGAAGATAGCTATAGACACCATTACAGGATACGTTCAAGATTATCAAGCTCGAAGAGCCAAGGTCACAGATGAGGTCATGCACGAATATTTCAGAATAAGGAAAATCGACGTTTAA

Protein

MAEDKTINIAIAEDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQKIDDELIQRFEKVIGRKAHHLLRRGIFFSHRDLNVILNLHEAGKKFYLYTGRGPSSDSMHLGHMIPFMFTKWLQDVFNVPLIIQLTDDEKVLWRDIKVEDARKMAYNNAKDIIAIGFDPSNTFIFNDLDFIGQCPAFYQNMLRIQKCVTYNQVKGIFGFGDSDVIGKITFPSIEAAPAFSTTFPFIFENKIVHCLVPCAIDQDPYFRMTRDVAVRLKLPKPSLIHSTFLPALQGAQHKMSASDCNASIFLNDTPKQIKNKINKYAFSGGQITVEEHREKGGNTDVDISYKYLVFFLEDDDKLAEIKKSYESGQMLTGELKKIAIDTITGYVQDYQARRAKVTDEVMHEYFRIRKIDV

Similarity

Belongs to the class-I aminoacyl-tRNA synthetase family.

Uniprot

A0A2W1BNW0   A0A194Q7J4   A0A212EZV8   A0A2H1VZ82   I4DRL1   H9J6I4   + More
A0A1Y1NBX6   E0VYF3   A0A3S2LWP8   B4M5U2   B4QX82   A0A0K8TNH2   A0A1I8MP81   T1P9M4   B4HKG2   A0A1I8MP72   A0A1W4XJ12   Q29CF1   B4GN53   Q9U4Y1   A0A3B0K9G1   B3P1S0   B4K622   Q9U4Y0   Q0KI98   B4PUL3   A0A1B6IJE3   A0A1I8P1Q5   W8BBT2   A0A026WY42   A0A1W4VQP7   A0A1B0CR67   A0A1B6IVS5   B3M1L1   B4JYN8   A0A0A1WSP9   A0A0A1X0M5   A0A034WGV9   A0A1B6GMH1   A0A0T6B0X6   D6WPD3   A0A195F9T5   B4NI24   A0A0K2SXI5   A0A1L8DHY6   A0A158NCS2   A0A1L8DHS9   A0A151I0Q2   A0A0P5T6R0   A0A0K8U863   E2BPH0   A0A195EAL7   E9ILY2   K7IR68   A0A232ETD0   A0A151WFI0   A0A1B6KZX3   A0A0P6ELR4   A0A0N8BBG8   A0A1B0AJV7   A0A0V0G6F4   A0A0J7L4H2   W4Y648   A0A0A9WMU7   A0A154PH62   A0A0P6HNJ8   A0A195CFU3   A0A1A9UWY1   F4WYZ0   A0A0P5Z1A8   A0A0P6A610   D3TSD2   A0A0N8CHV6   A0A0P5Z1K9   A0A0L7R464   A0A0A9WJY2   A0A0P6D069   A0A0P5XL74   A0A1A9XUC9   A0A0P5X1W8   A0A0P5GDN5   E1ZVH8   A0A069DYW0   A0A0P5F858   A0A0P5NBY2   A0A0P5B8B9   A0A1B6DZQ3   A0A1A9WZ16   A0A2H8TJ42   A0A088A661   A0A067R5I9   A0A0L0CIV4   A0A224XRH6   A0A2A3EKD1   A0A182JZN7   T1IB72   A0A0P4VU98   C4WWS8   A0A0P5S641   A0A182HJH7  

Pubmed

28756777    26354079    22118469    22651552    19121390    28004739    + More
20566863    17994087    26369729    25315136    15632085    10233165    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    24495485    24508170    30249741    25830018    25348373    18362917    19820115    21347285    20798317    21282665    20075255    28648823    25401762    26823975    21719571    20353571    26334808    24845553    26108605    27129103   

EMBL

KZ150042    PZC74556.1    KQ459324    KPJ01493.1    AGBW02011239    OWR46981.1    + More
ODYU01005039    SOQ45534.1    AK405169    BAM20551.1    BABH01019782    GEZM01012195    JAV93117.1    DS235845    EEB18409.1    RSAL01000152    RVE45728.1    CH940652    EDW59018.1    CM000364    EDX13653.1    GDAI01001689    JAI15914.1    KA645399    AFP60028.1    CH480815    EDW42912.1    CM000070    EAL26695.1    CH479186    EDW39179.1    AF125156    AY075249    AAF20166.1    AAL68116.1    OUUW01000005    SPP80178.1    CH954181    EDV49808.1    CH933806    EDW16259.1    AF125157    AAF20167.1    AE014297    BT044253    AAF54352.1    ACH92318.1    CM000160    EDW96630.1    GECU01020671    GECU01008901    JAS87035.1    JAS98805.1    GAMC01007855    JAB98700.1    KK107069    QOIP01000002    EZA60743.1    RLU26049.1    AJWK01024422    GECU01016671    GECU01015329    JAS91035.1    JAS92377.1    CH902617    EDV43302.1    CH916377    EDV90800.1    GBXI01012844    JAD01448.1    GBXI01009423    JAD04869.1    GAKP01005949    GAKP01005948    JAC53003.1    GECZ01013761    GECZ01006140    GECZ01000649    JAS56008.1    JAS63629.1    JAS69120.1    LJIG01016265    KRT81119.1    KQ971354    EFA07367.1    KQ981727    KYN37141.1    CH964272    EDW84716.1    HACA01000630    CDW17991.1    GFDF01008114    JAV05970.1    ADTU01011739    GFDF01008113    JAV05971.1    KQ976642    KYM78694.1    GDIP01130200    JAL73514.1    GDHF01029471    GDHF01029465    JAI22843.1    JAI22849.1    GL449633    EFN82374.1    KQ979236    KYN22161.1    GL764129    EFZ18362.1    NNAY01002288    OXU21618.1    KQ983211    KYQ46600.1    GEBQ01022975    JAT17002.1    GDIQ01060763    JAN33974.1    GDIQ01194115    JAK57610.1    GECL01002491    JAP03633.1    LBMM01000808    KMQ97443.1    AAGJ04000481    AAGJ04000482    AAGJ04000483    GBHO01034853    GBHO01004780    GDHC01007232    JAG08751.1    JAG38824.1    JAQ11397.1    KQ434904    KZC11183.1    GDIQ01016674    JAN78063.1    KQ977873    KYM99171.1    GL888463    EGI60644.1    GDIP01050508    JAM53207.1    GDIP01034713    JAM69002.1    CCAG010007645    EZ424334    ADD20610.1    GDIP01130199    JAL73515.1    GDIP01051811    JAM51904.1    KQ414658    KOC65638.1    GBHO01034842    JAG08762.1    GDIQ01084957    JAN09780.1    GDIP01070412    JAM33303.1    GDIP01078908    JAM24807.1    GDIQ01246249    GDIQ01088350    JAK05476.1    GL434534    EFN74815.1    GBGD01001705    JAC87184.1    GDIQ01269058    GDIQ01266581    GDIQ01266580    JAJ85143.1    GDIQ01155080    JAK96645.1    GDIP01188038    JAJ35364.1    GEDC01006169    JAS31129.1    GFXV01001503    MBW13308.1    KK852683    KDR18550.1    JRES01000338    KNC32152.1    GFTR01005815    JAW10611.1    KZ288229    PBC31712.1    ACPB03007263    GDKW01002199    JAI54396.1    ABLF02037700    AK342241    BAH72348.1    GDIQ01091953    JAL59773.1    APCN01002169   

Proteomes

UP000053268    UP000007151    UP000005204    UP000009046    UP000283053    UP000008792    + More
UP000000304    UP000095301    UP000001292    UP000192223    UP000001819    UP000008744    UP000268350    UP000008711    UP000009192    UP000000803    UP000002282    UP000095300    UP000053097    UP000279307    UP000192221    UP000092461    UP000007801    UP000001070    UP000007266    UP000078541    UP000007798    UP000005205    UP000078540    UP000008237    UP000078492    UP000002358    UP000215335    UP000075809    UP000092445    UP000036403    UP000007110    UP000076502    UP000078542    UP000078200    UP000007755    UP000092444    UP000053825    UP000092443    UP000000311    UP000091820    UP000005203    UP000027135    UP000037069    UP000242457    UP000075881    UP000015103    UP000007819    UP000075840   

PRIDE

H9J6I4    Q9U4Y0   

Pfam

PF00579   tRNA-synt_1b        + More
PF00001   7tm_1
PF00010   HLH

Interpro

IPR002306   Trp-tRNA-ligase        + More
IPR014729   Rossmann-like_a/b/a_fold       
IPR002305   aa-tRNA-synth_Ic       
IPR001412   aa-tRNA-synth_I_CS       
IPR017452   GPCR_Rhodpsn_7TM       
IPR028336   GPR119       
IPR000276   GPCR_Rhodpsn       
IPR011598   bHLH_dom       
IPR036638   HLH_DNA-bd_sf       

SUPFAM

SSF47459   SSF47459       

Gene 3D

3.40.50.620     4.10.280.10    

CDD

cd00806  TrpRS_core
cd15104  7tmA_GPR119_R_insulinotropic_r
cd00083  HLH

ProteinModelPortal

A0A2W1BNW0   A0A194Q7J4   A0A212EZV8   A0A2H1VZ82   I4DRL1   H9J6I4   + More
A0A1Y1NBX6   E0VYF3   A0A3S2LWP8   B4M5U2   B4QX82   A0A0K8TNH2   A0A1I8MP81   T1P9M4   B4HKG2   A0A1I8MP72   A0A1W4XJ12   Q29CF1   B4GN53   Q9U4Y1   A0A3B0K9G1   B3P1S0   B4K622   Q9U4Y0   Q0KI98   B4PUL3   A0A1B6IJE3   A0A1I8P1Q5   W8BBT2   A0A026WY42   A0A1W4VQP7   A0A1B0CR67   A0A1B6IVS5   B3M1L1   B4JYN8   A0A0A1WSP9   A0A0A1X0M5   A0A034WGV9   A0A1B6GMH1   A0A0T6B0X6   D6WPD3   A0A195F9T5   B4NI24   A0A0K2SXI5   A0A1L8DHY6   A0A158NCS2   A0A1L8DHS9   A0A151I0Q2   A0A0P5T6R0   A0A0K8U863   E2BPH0   A0A195EAL7   E9ILY2   K7IR68   A0A232ETD0   A0A151WFI0   A0A1B6KZX3   A0A0P6ELR4   A0A0N8BBG8   A0A1B0AJV7   A0A0V0G6F4   A0A0J7L4H2   W4Y648   A0A0A9WMU7   A0A154PH62   A0A0P6HNJ8   A0A195CFU3   A0A1A9UWY1   F4WYZ0   A0A0P5Z1A8   A0A0P6A610   D3TSD2   A0A0N8CHV6   A0A0P5Z1K9   A0A0L7R464   A0A0A9WJY2   A0A0P6D069   A0A0P5XL74   A0A1A9XUC9   A0A0P5X1W8   A0A0P5GDN5   E1ZVH8   A0A069DYW0   A0A0P5F858   A0A0P5NBY2   A0A0P5B8B9   A0A1B6DZQ3   A0A1A9WZ16   A0A2H8TJ42   A0A088A661   A0A067R5I9   A0A0L0CIV4   A0A224XRH6   A0A2A3EKD1   A0A182JZN7   T1IB72   A0A0P4VU98   C4WWS8   A0A0P5S641   A0A182HJH7  

PDB

1R6T     E-value=2.67546e-154,     Score=1399

KEGG

101740812    K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2] | (RefSeq) tryptophan--tRNA ligase, cytoplasmic

PATHWAY

00970    Aminoacyl-tRNA biosynthesis - Bombyx mori (domestic silkworm)

GO

GO:0004830   GO:0006436   GO:0005524   GO:0006412   GO:0004812   GO:0048813   GO:0005737   GO:0004930   GO:0016021   GO:0046983   GO:0000166   GO:0006418   GO:0004222   GO:0031012   GO:0008233  

Length:

400

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0233

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02785

outside

1  -  400

 

 

Pi

251.804672

Theta

210.205796

Tajima's D

0.332946

CLR

0.713797

CSRT

0.465826708664567

Interpretation

Possibly Positive selection