Silkworm Genome Informatics Database

Gene

KWMTBOMO15340

Pre Gene Modal

BGIBMGA005127

Annotation

Helix-loop-helix_protein_2_[Papilio_xuthus]

Location

Bomo_Chr25(-):9666789-9669545 View in EpiBrowser

Transcription factor

bHLH

Location in the cell

Nuclear Reliability : 4.247

CDS

ATGTACAATCAAACATACGACGATGAGGCCCCTTTGCCTCTGATAGCTAATTACACCGTTGTCAAAGAAGACCAAGAAGAAAAGAGAGAAGTGGAAGAAAGAGTTATTCTAGAAATAGGACGGCAGGACGACAAACCGAAGGAAGAACACACGTTTTCTCATAAGAAGTATGATAAAACGATTTCCCATCATCGGTCGTATGTGCTAGAAGATTACGAGCCCAAGAGGATAACATACTTCAGGCCTCACGAATTCGAGCCTAGCAATCACGAAGGTCCGCGTTACTATGAGCACGAATACGTTCGTGACACCGTAGTGGGTCAGGAAACTCTTAATTCCGAGTCCTCGTTGGACTACTCGCAGGACTCTCAGGACAACATGAAAACTAATGACGACTCCAACCACGATACGATCTTGAGCTTAAAGGAAAGAGCCTTGCAGTTGGAACGAGAATACAAGAAAACTGCATGTGACCGAGAAAGGACTCGAATGCGTGACATGAATCGCGCGTTTGATCTCTTAAGATCAAAACTGCCCGTCACCAAACCGTCCAAAAAGAAATACTCCAAAATCGAGTGTTTGAGAATAGCAATTTGTTACATTCGCCACTTGGAGTACATGCTTGCAGGCGGCACACCAGACGAGAACTCTGCATTTTTCGAAGTTCACGCTTCTGATATGCGAAGGCGTCAACAGAGATACTAA

Protein

MYNQTYDDEAPLPLIANYTVVKEDQEEKREVEERVILEIGRQDDKPKEEHTFSHKKYDKTISHHRSYVLEDYEPKRITYFRPHEFEPSNHEGPRYYEHEYVRDTVVGQETLNSESSLDYSQDSQDNMKTNDDSNHDTILSLKERALQLEREYKKTACDRERTRMRDMNRAFDLLRSKLPVTKPSKKKYSKIECLRIAICYIRHLEYMLAGGTPDENSAFFEVHASDMRRRQQRY

Uniprot

H9J6I5 A0A2H1WAW8 A0A2W1BLL7 A0A2A4IZW9 A0A0N1INK7 A0A194Q7X7 + More
A0A212EZR2 A0A0L7KUH9

Pubmed

19121390 28756777 26354079 22118469 26227816

EMBL

BABH01019782 KC820642 AHJ80784.1 ODYU01007435 SOQ50208.1 KZ150042 + More
PZC74555.1 NWSH01004261 PCG65291.1 KQ460973 KPJ10060.1 KQ459324 KPJ01494.1 AGBW02011239 OWR46980.1 JTDY01005671 KOB66765.1

Proteomes

UP000005204 UP000218220 UP000053240 UP000053268 UP000007151 UP000037510 + More

PRIDE

H9J6I5

Pfam

PF00010 HLH

Interpro

IPR036638   HLH_DNA-bd_sf        + More
IPR011598   bHLH_dom
IPR040259   Mesogenin/MesP

SUPFAM

SSF47459 SSF47459

Gene 3D

4.10.280.10

CDD

cd00083 HLH

ProteinModelPortal

H9J6I5 A0A2H1WAW8 A0A2W1BLL7 A0A2A4IZW9 A0A0N1INK7 A0A194Q7X7 + More
A0A212EZR2 A0A0L7KUH9

PDB

2QL2 E-value=0.0244828, Score=85

KEGG

101741094 no KO assigned | (RefSeq) sage; helix-loop-helix protein 2-like

GO

GO:0046983 GO:0003700 GO:0005578 GO:0008237 GO:0008270 GO:0005515 GO:0005576 GO:0030414 GO:0004222 GO:0031012 GO:0008233

PANTHER

PTHR20937

Length:

234

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01378

Exp number, first 60 AAs:

0

Total prob of N-in:

0.58615

inside

1 - 234

Pi

164.326978

Theta

188.083035

Tajima's D

-0.478869

CLR

0.098412

CSRT

0.242037898105095

Interpretation

Possibly Positive selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics