Gene

KWMTBOMO15327

Pre Gene Modal

BGIBMGA005136

Annotation

PREDICTED:_UPF0692_protein_CG33108_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr25(-):9237395-9239315      View in EpiBrowser

Full name

UPF0692 protein CG33108      

Location in the cell

Cytoplasmic   Reliability : 1.543

CDS

ATGGTCAAATTAGTTAAAGAAGTATTCAATTTAGCTGGAATAAATAATGTGACCTTTGAATTGAAAATTGGTAACTTATTTAGCAGTGAAACAATTGAATTGTTAACGGATGGTGCAATTATATTGGTGCCATATGATGCTGATTGCAATCACTCACCGTGTCTACGTAATGGTCACACGGCACACTGGGCTCTCATCTGTGGAATCCTTATTGATAACCCTACTGAATCTTTTGAATTAGATGCCAACAATATTTATGTATTATGTAAACATGGAAAGTCTAAGTATTTAGCCATTTGGAAATTAGCAGATTTAGACAGCAGTAATAAGAATCTAAAAGAATTTTCTCCAAAGAAGGGAACTGATGGTTCCACATATGTTCTACCTGATGGCGGAATTGGTGGAGAAGACGGTCTCTGTAATCAATATTTAGTGTTTAAAGGATTAAACCCTAATTAG

Protein

MVKLVKEVFNLAGINNVTFELKIGNLFSSETIELLTDGAIILVPYDADCNHSPCLRNGHTAHWALICGILIDNPTESFELDANNIYVLCKHGKSKYLAIWKLADLDSSNKNLKEFSPKKGTDGSTYVLPDGGIGGEDGLCNQYLVFKGLNPN

Similarity

Belongs to the UPF0692 family.

Keywords

Complete proteome   Reference proteome  

Feature

chain  UPF0692 protein CG33108

Uniprot

H9J6J4   A0A2W1BJS1   A0A2H1W8S5   A0A2A4JQ45   A0A2Z5U7V4   A0A1E1WBP5   + More
A0A3S2MB65   A0A0L7KRI3   A0A212FHP3   S4P3Z4   A0A194Q7L0   A0A0N1INK9   Q9VCE8   U5EX61   A0A0Q9X889   B4K795   A0A0T6ASS1   B4HGG2   T1PKF5   A0A3B0JK79   B4M0H4   B4JII4   A0A1L8DAB1   B4PL36   A0A1A9XAN2   A0A336LBH6   A0A1B0A685   A0A336MWR8   Q17EX0   A0A1I8MHT4   A0A1S4F567   B4NH43   A0A023ENY3   A0A182G4W0   A0A067RK18   B3M305   A0A1J1I806   A0A1Q3FIK4   A0A0K8VAQ1   A0A182PK60   A0A182FAW0   A0A182PKL0   A0A182LTR8   A0A1W4UJ95   A0A182VQK0   A0A2M4AXV5   A0A182Q1N3   A0A1I8Q9J1   Q1DGV9   A0A084W9H7   A0A2J7QBS6   A0A2M3ZAH6   A0A0A1XB72   A0A034WIA5   A0A2M4AUF6   A0A182IZ24   W5JLS0   A0A2M4BV19   A0A2M4AVL6   A0A1B0DQI3   A0A2M4BV89   A0A2M4BV88   B4QSE5   A0A182NL80   A0A0L0BYF2   I5ANY1   A0A1A9V9C7   A0A3B4DCI9   A0A182RQS1   A0A1B6HJJ9   A0A1B6I1F2   A0A2P8XH12   E2BPF2   C1C3W7   B4G441   A0A2G9SJ55   A0A2A3EP76   A0A088ABR6   V9IDH4   A0A0C9REL8   A0A026WTS7   A0A2G9SKP9   A0A0L7QTX7   A0A310SKB9   E1ZYG6   E9IF27   A0A151IPM9   A0A151I1Q1   A0A158NAE2   A0A0J7K3S6   A0A182HJH2   A0A1B6LDU9   A0A151J0H5   A0A195EWA4   A0A151X1M2   A0A1B6F3H5   F4WMI5   A0A182V6J9   K7J3Z9  

Pubmed

19121390    28756777    26227816    22118469    23622113    26354079    + More
10731132    12537572    17994087    17550304    17510324    25315136    24945155    26483478    24845553    24438588    25830018    25348373    20920257    23761445    26108605    15632085    29403074    20798317    24508170    30249741    21282665    21347285    21719571    20075255   

EMBL

BABH01019811    KZ150042    PZC74541.1    ODYU01007062    SOQ49499.1    NWSH01000800    + More
PCG74121.1    AP017494    BBB06771.1    GDQN01010039    GDQN01006644    JAT81015.1    JAT84410.1    RSAL01000001    RVE55249.1    JTDY01006787    KOB65690.1    AGBW02008475    OWR53263.1    GAIX01009272    JAA83288.1    KQ459324    KPJ01508.1    KQ460973    KPJ10073.1    AE014297    GANO01000218    JAB59653.1    CH933806    KRG00926.1    EDW14219.1    LJIG01022896    KRT78179.1    CH480815    EDW43415.1    KA649184    AFP63813.1    OUUW01000007    SPP82744.1    CH940650    EDW68353.1    CH916369    EDV93065.1    GFDF01010777    JAV03307.1    CM000160    EDW99021.1    UFQS01002852    UFQT01002852    SSX14754.1    SSX34146.1    UFQS01002765    UFQT01002765    SSX14624.1    SSX34021.1    CH477278    EAT45090.1    CH964272    EDW84540.2    GAPW01002932    JAC10666.1    JXUM01144599    KQ569825    KXJ68508.1    KK852577    KDR20944.1    CH902617    EDV42405.2    CVRI01000039    CRK94537.1    GFDL01007614    JAV27431.1    GDHF01016402    JAI35912.1    AXCM01001494    GGFK01012303    MBW45624.1    AXCN02000110    CH900170    EAT32389.1    ATLV01021798    KE525323    KFB46871.1    NEVH01016296    PNF26040.1    GGFM01004772    MBW25523.1    GBXI01006257    JAD08035.1    GAKP01005082    JAC53870.1    GGFK01011098    MBW44419.1    ADMH02000775    ETN65076.1    GGFJ01007774    MBW56915.1    GGFK01011337    MBW44658.1    AJVK01019146    AJVK01019147    AJVK01019148    GGFJ01007773    MBW56914.1    GGFJ01007771    MBW56912.1    CM000364    EDX14144.1    JRES01001160    KNC25068.1    CM000070    EIM52666.2    GECU01032849    JAS74857.1    GECU01026963    JAS80743.1    PYGN01002184    PSN31244.1    GL449633    EFN82356.1    BT081546    ACO51677.1    CH479179    EDW24452.1    KV924964    PIO40104.1    KZ288209    PBC33006.1    JR040522    JR040523    AEY59168.1    AEY59169.1    GBYB01005386    GBYB01005401    GBYB01005431    JAG75153.1    JAG75168.1    JAG75198.1    KK107105    QOIP01000011    EZA59465.1    RLU16902.1    PIO40103.1    KQ414745    KOC61901.1    KQ763472    OAD55031.1    GL435215    EFN73763.1    GL762758    EFZ20815.1    KQ976829    KYN07995.1    KQ976600    KYM79478.1    ADTU01010268    LBMM01014918    KMQ84997.1    APCN01002166    GEBQ01018313    JAT21664.1    KQ980629    KYN14989.1    KQ981954    KYN32169.1    KQ982585    KYQ54185.1    GECZ01025356    JAS44413.1    GL888217    EGI64596.1    AAZX01000987   

Proteomes

UP000005204    UP000218220    UP000283053    UP000037510    UP000007151    UP000053268    + More
UP000053240    UP000000803    UP000009192    UP000001292    UP000268350    UP000008792    UP000001070    UP000002282    UP000092443    UP000092445    UP000008820    UP000095301    UP000007798    UP000069940    UP000249989    UP000027135    UP000007801    UP000183832    UP000075885    UP000069272    UP000075883    UP000192221    UP000075920    UP000075886    UP000095300    UP000030765    UP000235965    UP000075880    UP000000673    UP000092462    UP000000304    UP000075884    UP000037069    UP000001819    UP000078200    UP000261440    UP000075900    UP000245037    UP000008237    UP000008744    UP000242457    UP000005203    UP000053097    UP000279307    UP000053825    UP000000311    UP000078542    UP000078540    UP000005205    UP000036403    UP000075840    UP000078492    UP000078541    UP000075809    UP000007755    UP000075903    UP000002358   

PRIDE

H9J6J4    Q9VCE8   

Pfam

PF01423   LSM

Interpro

IPR040043   UPF0692        + More
IPR034105   Lsm3       
IPR001163   LSM_dom_euk/arc       
IPR040002   Sm-like_LSM3       
IPR010920   LSM_dom_sf       

SUPFAM

SSF50182   SSF50182       

CDD

cd01730  LSm3

ProteinModelPortal

H9J6J4   A0A2W1BJS1   A0A2H1W8S5   A0A2A4JQ45   A0A2Z5U7V4   A0A1E1WBP5   + More
A0A3S2MB65   A0A0L7KRI3   A0A212FHP3   S4P3Z4   A0A194Q7L0   A0A0N1INK9   Q9VCE8   U5EX61   A0A0Q9X889   B4K795   A0A0T6ASS1   B4HGG2   T1PKF5   A0A3B0JK79   B4M0H4   B4JII4   A0A1L8DAB1   B4PL36   A0A1A9XAN2   A0A336LBH6   A0A1B0A685   A0A336MWR8   Q17EX0   A0A1I8MHT4   A0A1S4F567   B4NH43   A0A023ENY3   A0A182G4W0   A0A067RK18   B3M305   A0A1J1I806   A0A1Q3FIK4   A0A0K8VAQ1   A0A182PK60   A0A182FAW0   A0A182PKL0   A0A182LTR8   A0A1W4UJ95   A0A182VQK0   A0A2M4AXV5   A0A182Q1N3   A0A1I8Q9J1   Q1DGV9   A0A084W9H7   A0A2J7QBS6   A0A2M3ZAH6   A0A0A1XB72   A0A034WIA5   A0A2M4AUF6   A0A182IZ24   W5JLS0   A0A2M4BV19   A0A2M4AVL6   A0A1B0DQI3   A0A2M4BV89   A0A2M4BV88   B4QSE5   A0A182NL80   A0A0L0BYF2   I5ANY1   A0A1A9V9C7   A0A3B4DCI9   A0A182RQS1   A0A1B6HJJ9   A0A1B6I1F2   A0A2P8XH12   E2BPF2   C1C3W7   B4G441   A0A2G9SJ55   A0A2A3EP76   A0A088ABR6   V9IDH4   A0A0C9REL8   A0A026WTS7   A0A2G9SKP9   A0A0L7QTX7   A0A310SKB9   E1ZYG6   E9IF27   A0A151IPM9   A0A151I1Q1   A0A158NAE2   A0A0J7K3S6   A0A182HJH2   A0A1B6LDU9   A0A151J0H5   A0A195EWA4   A0A151X1M2   A0A1B6F3H5   F4WMI5   A0A182V6J9   K7J3Z9  

KEGG

101742475    no KO assigned | (RefSeq) UPF0692 protein CG33108

GO

GO:0003723   GO:0000956   GO:0000398  

PANTHER

PTHR28631   PTHR13110  

Length:

152

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01009

Exp number, first 60 AAs:

0.00922999999999999

Total prob of N-in:

0.13503

outside

1  -  152

 

 

Pi

158.966814

Theta

140.721153

Tajima's D

-0.445703

CLR

3.465301

CSRT

0.254687265636718

Interpretation

Uncertain