Gene

KWMTBOMO15320

Pre Gene Modal

BGIBMGA005062

Annotation

TFIIB-related_factor_[Bombyx_mori]

Location

Bomo_Chr25(+):9016686-9027380      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.864

CDS

ATGACTGCACTCAGACTGGTTCAGCGAATGAAGAAGGACTCCATCCACTCGGGGAGAAGACCCTCCGGAATATGTGGAGCTGCATTACTCATAGCAGCTCGACTGCACGAATTCTCACGCACCCCGTCCGATATCGTCCGTATAGTCAAAGTTCACGAGTCAACACTCCGCAAACGCATGTTCGAATTCGGAGACACCCCATCCAGCGCCCTGACCCTCGAAGAGTTCATGACCGTCGACCTAGAGGAGGAACAGGACCCACCGGCGTTCAGGGCGGCGCGGAAACGTGATAAAGAGAGGCTGCAAAAGCTAATGGAAGAAGAGGACGGAGAGAAGGAACTGACGGAATTGCAGAAAGAAATAGAAGCTCAAATAGAAAAGGATATGTCAAGAAGACGAAAAGTCTGTTCCGCTTCGTATACTAGTTCACCGGGACCCGTCTCCCAGGAAAATATAGGTTCGGAAGATGAAGACGCTACAAGGTTCGCTGCTGAAGAAACATTGGAGATAATTGACGAGATCACAAAGGATATAAGACCTAAAAACGAGGGACCGAAGGAAGAAAATAAACATGAGAAGATGAAACTCGAAAAGGGTCTAGGACCGGACTTAGCGGTCATAGGCCTCGGTCCGTCCGACGATAAGAACGCAGACAAGTTCGTCAAGCCTGAACCGAAGCAAACGTTTTGCAAGGACCTGCAGAACGCCGACGAACTGGTCATGAGTCAGAGAGACGAAGAGTACATCGATTCGTTGATCATGAGCGCCGATGAGGCTAAGCACAAAACTAAACTGTGGAACAAAGTCAACGCCGGCTATTTGAAAGAACAGAAAATCAAGCAAGAGATTAAGGCAAAAGAATTAGAAGAGAACAAAGACAAAAAGAAGAAAGTGAGAGGCTCATACAGAAAGAAGGTCGCCATTAACGCCGCGACCGCCGGTGAGGCTATAGAGAAGATGTTGGCCGAGAAGAAGATGAGCTCCAAGATCAATTACGACATCCTGAAGAGCCTCGACCAGTCGGGCGCTCCGATAGCACCGCCCTCTTCGAAACCTGACACGGAAGCTGCCGCCAGCCCCAGAGGTCCACCGACGCCGGCTGCTCCTGGGACGACGGTGGTTCCAGAATCTCCGATACCCCGGAAACGGAAGAAGAAGGCGCGACCCGCCCCCCTCACGCCCGCGACCCCCTCCAAGCCGCCCACGCCCGCCACTCCCGCCCCGCCGACACCACAAACTCCTGTACACGATATCATAGACGACGACGAAGACGATCAAGATCCAGAACCGGAACCGGAAGCCGAAGAGCTATCGCTAGCCGCCATTTTACAGAATGGACAAGAAGAAGATTATTATGATTATGAAGAATATTAA

Protein

MTALRLVQRMKKDSIHSGRRPSGICGAALLIAARLHEFSRTPSDIVRIVKVHESTLRKRMFEFGDTPSSALTLEEFMTVDLEEEQDPPAFRAARKRDKERLQKLMEEEDGEKELTELQKEIEAQIEKDMSRRRKVCSASYTSSPGPVSQENIGSEDEDATRFAAEETLEIIDEITKDIRPKNEGPKEENKHEKMKLEKGLGPDLAVIGLGPSDDKNADKFVKPEPKQTFCKDLQNADELVMSQRDEEYIDSLIMSADEAKHKTKLWNKVNAGYLKEQKIKQEIKAKELEENKDKKKKVRGSYRKKVAINAATAGEAIEKMLAEKKMSSKINYDILKSLDQSGAPIAPPSSKPDTEAAASPRGPPTPAAPGTTVVPESPIPRKRKKKARPAPLTPATPSKPPTPATPAPPTPQTPVHDIIDDDEDDQDPEPEPEAEELSLAAILQNGQEEDYYDYEEY

Uniprot

H9J6C0   Q8MMP3   A0A2A4JSA3   A0A2H1VH72   A0A194PI84   A0A194RKK8   + More
A0A2W1BH66   A0A212F8Z9   A0A310SEV9   A0A2J7RIL6   A0A088AD90   A0A2A3EDV7   A0A067RUL4   A0A151I3C2   A0A154P298   A0A195EWR6   E2C806   A0A232F6I8   A0A195CBB4   A0A151WP62   B0WL02   A0A1Y1LYA8   K7IUV3   A0A195DUR5   A0A1B6EPE6   A0A1Y1M1I0   U4U065   A0A1W4W6M6   A0A1B6CGT7   E0VUM7   A0A1B6KKY2   A0A1Q3G0Z6   A0A1Q3G0X3   A0A0A9X7K6   N6TR98   D6WSI6   A0A0A1X9Z7   A0A0K8VB22   A0A034WCB4   A0A1A9WNQ1   A0A1I8NS50   B4G2P5   Q29A77   A0A336KA00   W8BY75   A0A1B0BM89   B3P3F1   A0A3B0KAS5   A0A0M4ENJ3   A0A1I8N2W7   B4PU72   B3LWT8   B4QVS0   A0A1D2MBF2   B4JTW2   A0A1W4V653   Q9VEL2   Q9NG52   A0A182GYG8   Q9NB72   B4N9S9   Q17IA9   Q17IB0   A0A3R7QCR1   A0A1S4F1P7   A0A182K6P2   B4K7K8   A0A0L0CJR5   A0A182PD78   A0A293ME49   A0A084VBG3   B4LXV6   A0A182L741   A0A293N0B6   A0A182ID97   A0A182IY06   A0A182URX8   A0A182UH87   Q7QB20   A0A182FPU4   A0A182XG51   A0A182ND06   A0A182W1A8   T1I4R4   A0A182QUB0   A0A182MGS1   A0A182RV66   A0A131XZI6   A0A182Y5E4   A0A147BCW4   A0A0K2UA20   A0A1Z5KU91   A0A023F087   A0A2M4BG40  

Pubmed

19121390    14518004    26354079    28756777    22118469    24845553    + More
20798317    28648823    28004739    20075255    23537049    20566863    25401762    26823975    18362917    19820115    25830018    25348373    17994087    15632085    24495485    25315136    17550304    27289101    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    10850489    26483478    17510324    26108605    24438588    20966253    12364791    14747013    17210077    25244985    29652888    28528879    25474469   

EMBL

BABH01019828    AF531261    AAM96688.1    NWSH01000669    PCG74917.1    ODYU01002546    + More
SOQ40190.1    KQ459604    KPI92434.1    KQ460045    KPJ18072.1    KZ150095    PZC73611.1    AGBW02009658    OWR50212.1    KQ760551    OAD59824.1    NEVH01003500    PNF40667.1    KZ288285    PBC29472.1    KK852408    KDR24500.1    KQ976482    KYM83702.1    KQ434787    KZC05338.1    KQ981948    KYN32591.1    GL453506    EFN75924.1    NNAY01000907    OXU25977.1    KQ978023    KYM97990.1    KQ982906    KYQ49485.1    DS231979    EDS30165.1    GEZM01044141    JAV78509.1    AAZX01002653    AAZX01009901    KQ980322    KYN16618.1    GECZ01029970    JAS39799.1    GEZM01044140    JAV78510.1    KB630406    KB630953    ERL83590.1    ERL83961.1    GEDC01024706    JAS12592.1    DS235787    EEB17083.1    GEBQ01027855    JAT12122.1    GFDL01001578    JAV33467.1    GFDL01001594    JAV33451.1    GBHO01028015    GBHO01028013    GDHC01006262    JAG15589.1    JAG15591.1    JAQ12367.1    APGK01057877    KB741282    ENN70846.1    KQ971352    EFA06650.2    GBXI01006804    JAD07488.1    GDHF01016257    GDHF01001909    JAI36057.1    JAI50405.1    GAKP01007510    GAKP01007509    JAC51443.1    CH479179    EDW24090.1    CM000070    EAL27473.2    UFQS01000205    UFQT01000205    SSX01321.1    SSX21701.1    GAMC01012351    JAB94204.1    JXJN01016731    JXJN01016732    CH954181    EDV48731.1    OUUW01000005    SPP80668.1    CP012526    ALC46276.1    CM000160    EDW97722.1    CH902617    EDV42726.1    CM000364    EDX12583.1    LJIJ01002106    ODM90214.1    CH916374    EDV91541.1    AE014297    AY051811    AAF55409.2    AAK93235.1    ACZ94932.1    AF262375    AAF72066.1    JXUM01097518    KQ564350    KXJ72393.1    AF262374    AAF72065.1    CH964232    EDW80644.2    CH477241    EAT46387.1    EAT46386.1    QCYY01003438    ROT63446.1    CH933806    EDW15352.1    JRES01000310    KNC32447.1    GFWV01012576    MAA37305.1    ATLV01006809    KE524386    KFB35307.1    CH940650    EDW67915.1    GFWV01021794    MAA46522.1    APCN01005054    AAAB01008880    EAA08645.5    ACPB03014599    AXCN02001566    AXCM01015454    GEFM01004128    JAP71668.1    GEGO01006800    JAR88604.1    HACA01017723    CDW35084.1    GFJQ02008311    JAV98658.1    GBBI01003802    JAC14910.1    GGFJ01002863    MBW52004.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007151    UP000235965    + More
UP000005203    UP000242457    UP000027135    UP000078540    UP000076502    UP000078541    UP000008237    UP000215335    UP000078542    UP000075809    UP000002320    UP000002358    UP000078492    UP000030742    UP000192223    UP000009046    UP000019118    UP000007266    UP000091820    UP000095300    UP000008744    UP000001819    UP000092460    UP000008711    UP000268350    UP000092553    UP000095301    UP000002282    UP000007801    UP000000304    UP000094527    UP000001070    UP000192221    UP000000803    UP000069940    UP000249989    UP000007798    UP000008820    UP000283509    UP000075881    UP000009192    UP000037069    UP000075885    UP000030765    UP000008792    UP000075882    UP000075840    UP000075880    UP000075903    UP000075902    UP000007062    UP000069272    UP000076407    UP000075884    UP000075920    UP000015103    UP000075886    UP000075883    UP000075900    UP000076408   

PRIDE

H9J6C0    Q8MMP3    Q9VEL2    Q9NG52    Q9NB72   

Pfam

PF07741   BRF1        + More
PF00382   TFIIB
PF08271   TF_Zn_Ribbon

Interpro

IPR013150   TFIIB_cyclin        + More
IPR036915   Cyclin-like_sf       
IPR000812   TFIIB       
IPR013763   Cyclin-like       
IPR011665   BRF1_TBP-bd_dom       
IPR013137   Znf_TFIIB       

SUPFAM

SSF47954   SSF47954       

CDD

cd00043  CYCLIN

ProteinModelPortal

H9J6C0   Q8MMP3   A0A2A4JSA3   A0A2H1VH72   A0A194PI84   A0A194RKK8   + More
A0A2W1BH66   A0A212F8Z9   A0A310SEV9   A0A2J7RIL6   A0A088AD90   A0A2A3EDV7   A0A067RUL4   A0A151I3C2   A0A154P298   A0A195EWR6   E2C806   A0A232F6I8   A0A195CBB4   A0A151WP62   B0WL02   A0A1Y1LYA8   K7IUV3   A0A195DUR5   A0A1B6EPE6   A0A1Y1M1I0   U4U065   A0A1W4W6M6   A0A1B6CGT7   E0VUM7   A0A1B6KKY2   A0A1Q3G0Z6   A0A1Q3G0X3   A0A0A9X7K6   N6TR98   D6WSI6   A0A0A1X9Z7   A0A0K8VB22   A0A034WCB4   A0A1A9WNQ1   A0A1I8NS50   B4G2P5   Q29A77   A0A336KA00   W8BY75   A0A1B0BM89   B3P3F1   A0A3B0KAS5   A0A0M4ENJ3   A0A1I8N2W7   B4PU72   B3LWT8   B4QVS0   A0A1D2MBF2   B4JTW2   A0A1W4V653   Q9VEL2   Q9NG52   A0A182GYG8   Q9NB72   B4N9S9   Q17IA9   Q17IB0   A0A3R7QCR1   A0A1S4F1P7   A0A182K6P2   B4K7K8   A0A0L0CJR5   A0A182PD78   A0A293ME49   A0A084VBG3   B4LXV6   A0A182L741   A0A293N0B6   A0A182ID97   A0A182IY06   A0A182URX8   A0A182UH87   Q7QB20   A0A182FPU4   A0A182XG51   A0A182ND06   A0A182W1A8   T1I4R4   A0A182QUB0   A0A182MGS1   A0A182RV66   A0A131XZI6   A0A182Y5E4   A0A147BCW4   A0A0K2UA20   A0A1Z5KU91   A0A023F087   A0A2M4BG40  

PDB

6F44     E-value=1.71832e-15,     Score=202

KEGG

692609    K15196 transcription factor IIIB 90 kDa subunit | (RefSeq) Brf; TFIIB-related factor

GO

GO:0006355   GO:0070897   GO:0000126   GO:0000995   GO:0017025   GO:0046872   GO:0003743   GO:0005634   GO:0001006   GO:0006352   GO:0070898   GO:0008134   GO:0001046   GO:0016021   GO:0006383   GO:0005667   GO:0008270   GO:0006357   GO:0006814   GO:0006270   GO:0042555   GO:0015930  

PANTHER

PTHR11618  

Length:

457

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.19478

Exp number, first 60 AAs:

0.19478

Total prob of N-in:

0.01752

outside

1  -  457

 

 

Pi

186.054103

Theta

173.651068

Tajima's D

0.44963

CLR

0.000021

CSRT

0.501974901254937

Interpretation

Uncertain