Gene

KWMTBOMO15318

Pre Gene Modal

BGIBMGA005061

Annotation

TFIIB-related_factor_[Bombyx_mori]

Location

Bomo_Chr25(+):8977536-8979058      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 2.157

CDS

ATGTCAGGGAAAAAATGTAAACACTGCGGTTCATCGGAGATAGAGGTAGATCCCGCACGTGGCGATGCAGTCTGTACAAGTTGTGGTACTGTACTTGAAGATAACATTATCGTTTCTGAGGTAGAGTTTCAAGAAAATGCTCATGGGGGAGCCTCTGCAATTGGACAGTTTGTATCTGCGGATACTAAGGGAGGAGCTACTGGTTTTGGTAGAGCCTTCAATGCTGGTATTGGTCAAGAGTCAAAAGAGATCACATTGAGGAAAGCTAGAATTGGTATCACAGCATTATGCCAGCAACTTCGTCTAAACCAACAATGCATTGACATTGCCTGTAATTTTTACAAAATGGCCTTATCCAGACATTTGACTATAGGCAGGCCGGTAACACATACCCAAGCTGCATGTGTTTACATGACCTGTAGGACAGAGGGGACCCCTCATCTGCTAATTGATGTAAGTGATGCTGTACCATTGTGCTGCTATCAACTTGGTCGAGCATATTTCAAACTGTCACGGGCTCTGTGCATCAACATACCTCCTACTGGTAAGTTTTTTTAA

Protein

MSGKKCKHCGSSEIEVDPARGDAVCTSCGTVLEDNIIVSEVEFQENAHGGASAIGQFVSADTKGGATGFGRAFNAGIGQESKEITLRKARIGITALCQQLRLNQQCIDIACNFYKMALSRHLTIGRPVTHTQAACVYMTCRTEGTPHLLIDVSDAVPLCCYQLGRAYFKLSRALCINIPPTGKFF

Uniprot

Q8MMP3   A0A2H1V5C7   A0A2A4J787   A0A2W1BPK1   A0A1E1WFK3   A0A212F907   + More
A0A194RL79   A0A194PGK2   H9J6B9   A0A1Y1M0G9   A0A1Y1M2G5   A0A2P8XGT6   A0A182JGZ5   D6WSI3   A0A1Y1LYA8   A0A182GYH2   A0A1W4W6M6   A0A182QD96   A0A182FPU2   A0A182Y5E2   A0A182W1A6   A0A2M4AYR1   W5JKE8   A0A182SQ42   A0A182RV63   A0A182ND04   B0WL05   A0A182JPJ7   A0A067RUL4   Q17IA9   Q17IB0   A0A1S4F1P7   N6ST20   A0A1Q3G0X3   A0A1Q3G0Z6   A0A1B6I451   A0A182MFW1   A0A2M4BG40   A0A2R7W7U2   A0A336KA00   Q7QB20   A0A1B6D7A5   A0A1B6EPE6   A0A0T6B8U1   A0A1B6KKY2   E0VUN0   A0A1B6CGT7   T1I4R4   A0A023F087   A0A1B0G5K2   A0A1A9XM22   A0A1B0BM88   A0A1I8M5K8   A0A1A9WNQ7   A0A1J1I5H4   A0A310SRW0   A0A0L7RA70   A0A1B0A7Z3   A0A0A9X7K6   A0A1A9V8N8   A0A0N0U4L5   A0A0K8U6B6   A0A154P298   V9IGT4   A0A2A3EDV7   A0A088AD90   A0A232F6I8   K7IUV3   A0A0K8VB22   A0A0A1X9Z7   A0A1E1XMJ5   A0A034WCB4   A0A1I8NS50   E2C809   W8BY75   A0A0L0CJR5   A0A1I8N2W7   A0A1Z5KU91   B7Q833   A0A1D2MBF2   A0A147BCW4   A0A131XZI6   A0A3Q0IHL6   A0A1E1XCG8   A0A0M4EE92   A0A084VBG5   A0A1V4KA82   A0A0Q3XBK8   A0A226DCB3   A0A151WNM5   A0A0K8TND5   A0A1B0CP14   A0A2R5LM11   B4IBJ2   G1THW4   A0A182XG49   A0A182L740   A0A182PD76   A0A182U5N1   A0A182ID95  

Pubmed

14518004    28756777    22118469    26354079    19121390    28004739    + More
29403074    18362917    19820115    26483478    25244985    20920257    23761445    24845553    17510324    23537049    12364791    14747013    17210077    20566863    25474469    25315136    25401762    26823975    28648823    20075255    25830018    29209593    25348373    20798317    24495485    26108605    28528879    27289101    29652888    28503490    24438588    26369729    17994087    21993624    20966253   

EMBL

AF531261    AAM96688.1    ODYU01000766    SOQ36055.1    NWSH01002741    PCG67596.1    + More
KZ150095    PZC73613.1    GDQN01005282    GDQN01003279    JAT85772.1    JAT87775.1    AGBW02009658    OWR50210.1    KQ460045    KPJ18075.1    KQ459604    KPI92432.1    BABH01019830    GEZM01044142    JAV78508.1    GEZM01044144    JAV78505.1    PYGN01002190    PSN31219.1    KQ971352    EFA06649.2    GEZM01044141    JAV78509.1    JXUM01097520    JXUM01097521    KQ564350    KXJ72397.1    AXCN02001566    GGFK01012564    MBW45885.1    ADMH02000944    ETN64606.1    DS231979    EDS30168.1    KK852408    KDR24500.1    CH477241    EAT46387.1    EAT46386.1    APGK01057875    KB741282    KB632233    ENN70844.1    ERL90422.1    GFDL01001594    JAV33451.1    GFDL01001578    JAV33467.1    GECU01025999    JAS81707.1    AXCM01001325    GGFJ01002863    MBW52004.1    KK854431    PTY15804.1    UFQS01000205    UFQT01000205    SSX01321.1    SSX21701.1    AAAB01008880    EAA08645.5    GEDC01015735    JAS21563.1    GECZ01029970    JAS39799.1    LJIG01009111    KRT83734.1    GEBQ01027855    JAT12122.1    DS235787    EEB17086.1    GEDC01024706    JAS12592.1    ACPB03014599    GBBI01003802    JAC14910.1    CCAG010018664    JXJN01016729    CVRI01000041    CRK95435.1    KQ760551    OAD59822.1    KQ414620    KOC67651.1    GBHO01028015    GBHO01028013    GDHC01006262    JAG15589.1    JAG15591.1    JAQ12367.1    KQ435811    KOX72894.1    GDHF01030213    JAI22101.1    KQ434787    KZC05338.1    JR046888    AEY60275.1    KZ288285    PBC29472.1    NNAY01000907    OXU25977.1    AAZX01002653    AAZX01009901    GDHF01016257    GDHF01001909    JAI36057.1    JAI50405.1    GBXI01006804    JAD07488.1    GFAA01002887    JAU00548.1    GAKP01007510    GAKP01007509    JAC51443.1    GL453506    EFN75927.1    GAMC01012351    JAB94204.1    JRES01000310    KNC32447.1    GFJQ02008311    JAV98658.1    ABJB010065543    ABJB010074499    ABJB010132094    ABJB010536954    ABJB011083231    ABJB011125909    DS880154    EEC15005.1    LJIJ01002106    ODM90214.1    GEGO01006800    JAR88604.1    GEFM01004128    JAP71668.1    GFAC01002289    JAT96899.1    CP012526    ALC46278.1    ATLV01006809    KE524386    KFB35309.1    LSYS01003973    OPJ81376.1    LMAW01000037    KQL61058.1    LNIX01000025    OXA42770.1    KQ982906    KYQ49479.1    GDAI01001724    JAI15879.1    AJWK01021311    GGLE01006359    MBY10485.1    CH480827    EDW44750.1    APCN01005054   

Proteomes

UP000218220    UP000007151    UP000053240    UP000053268    UP000005204    UP000245037    + More
UP000075880    UP000007266    UP000069940    UP000249989    UP000192223    UP000075886    UP000069272    UP000076408    UP000075920    UP000000673    UP000075901    UP000075900    UP000075884    UP000002320    UP000075881    UP000027135    UP000008820    UP000019118    UP000030742    UP000075883    UP000007062    UP000009046    UP000015103    UP000092444    UP000092443    UP000092460    UP000095301    UP000091820    UP000183832    UP000053825    UP000092445    UP000078200    UP000053105    UP000076502    UP000242457    UP000005203    UP000215335    UP000002358    UP000095300    UP000008237    UP000037069    UP000001555    UP000094527    UP000079169    UP000092553    UP000030765    UP000190648    UP000051836    UP000198287    UP000075809    UP000092461    UP000001292    UP000001811    UP000076407    UP000075882    UP000075885    UP000075902    UP000075840   

PRIDE

Q8MMP3    H9J6B9   

Pfam

PF00382   TFIIB        + More
PF07741   BRF1
PF08271   TF_Zn_Ribbon

Interpro

IPR000812   TFIIB        + More
IPR036915   Cyclin-like_sf       
IPR013150   TFIIB_cyclin       
IPR013137   Znf_TFIIB       
IPR013763   Cyclin-like       
IPR011665   BRF1_TBP-bd_dom       

SUPFAM

SSF47954   SSF47954       

CDD

cd00043  CYCLIN

ProteinModelPortal

Q8MMP3   A0A2H1V5C7   A0A2A4J787   A0A2W1BPK1   A0A1E1WFK3   A0A212F907   + More
A0A194RL79   A0A194PGK2   H9J6B9   A0A1Y1M0G9   A0A1Y1M2G5   A0A2P8XGT6   A0A182JGZ5   D6WSI3   A0A1Y1LYA8   A0A182GYH2   A0A1W4W6M6   A0A182QD96   A0A182FPU2   A0A182Y5E2   A0A182W1A6   A0A2M4AYR1   W5JKE8   A0A182SQ42   A0A182RV63   A0A182ND04   B0WL05   A0A182JPJ7   A0A067RUL4   Q17IA9   Q17IB0   A0A1S4F1P7   N6ST20   A0A1Q3G0X3   A0A1Q3G0Z6   A0A1B6I451   A0A182MFW1   A0A2M4BG40   A0A2R7W7U2   A0A336KA00   Q7QB20   A0A1B6D7A5   A0A1B6EPE6   A0A0T6B8U1   A0A1B6KKY2   E0VUN0   A0A1B6CGT7   T1I4R4   A0A023F087   A0A1B0G5K2   A0A1A9XM22   A0A1B0BM88   A0A1I8M5K8   A0A1A9WNQ7   A0A1J1I5H4   A0A310SRW0   A0A0L7RA70   A0A1B0A7Z3   A0A0A9X7K6   A0A1A9V8N8   A0A0N0U4L5   A0A0K8U6B6   A0A154P298   V9IGT4   A0A2A3EDV7   A0A088AD90   A0A232F6I8   K7IUV3   A0A0K8VB22   A0A0A1X9Z7   A0A1E1XMJ5   A0A034WCB4   A0A1I8NS50   E2C809   W8BY75   A0A0L0CJR5   A0A1I8N2W7   A0A1Z5KU91   B7Q833   A0A1D2MBF2   A0A147BCW4   A0A131XZI6   A0A3Q0IHL6   A0A1E1XCG8   A0A0M4EE92   A0A084VBG5   A0A1V4KA82   A0A0Q3XBK8   A0A226DCB3   A0A151WNM5   A0A0K8TND5   A0A1B0CP14   A0A2R5LM11   B4IBJ2   G1THW4   A0A182XG49   A0A182L740   A0A182PD76   A0A182U5N1   A0A182ID95  

PDB

6F44     E-value=9.59913e-26,     Score=286

KEGG

692609    K15196 transcription factor IIIB 90 kDa subunit | (RefSeq) Brf; TFIIB-related factor

GO

GO:0017025   GO:0000995   GO:0046872   GO:0000126   GO:0006355   GO:0070897   GO:0016021   GO:0005634   GO:0001006   GO:0008134   GO:0006352   GO:0070898   GO:0003743   GO:0001046   GO:0008270   GO:0006357   GO:0006814   GO:0006270   GO:0042555   GO:0015930  

PANTHER

PTHR11618  

Length:

185

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00733

Exp number, first 60 AAs:

0.0001

Total prob of N-in:

0.30611

outside

1  -  185

 

 

Pi

220.298204

Theta

165.145301

Tajima's D

0.780384

CLR

0

CSRT

0.598370081495925

Interpretation

Uncertain