Gene

KWMTBOMO15303

Annotation

endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]

Location

Bomo_Chr25(-):8623289-8624246      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.66 Nuclear   Reliability : 1.058

CDS

ATGACCATTAACGCTGGCGTTCCACAAGGTTCGGTGCTCTCCCCCACGCTTTTCATCTTGTATATCAATGACATGCTGTCTATTTATGGCATGCATTGCTATGCGGATGACAGCACGGGGGATGTGCGATATATCGGCCATCAGATTCTCTCACGGAGCGTAGTGCAGGAGAGACATTCAAAACTTGTGTTTGAAGTGGAGAACTCTCTGGGGCGAGCCTCCGAGTGGGGTGAAGTAAATTTGGTTCAATTCAACCCGTTGAAGACACAGGTTTGCGCGTTCACTGCGAAGAAGGACCCCTTTGTCATGGCGCCGCAATTCCAAGGTGTATCCCTACAACCTTCCAAGAATATTGGGATACTTGGGCTCGACATTTCGAGCGATGTCCAATTTCGGAGTCATTTGGAGGGCAAAGCCAAGTTGGCGTCAAAAATGCTGGGAGTCCTCAACAGAGCGAAGCGGTACTTCACGCCTGGACAAAGACTTTTGCTTTACAAAGCACAGGTCCGGCATCGCGTAGAGTACTGCTCCCATTTCTGGGCCGGGGCTCCCAAATACCAGCTACTTCCATTTGATTCCATACAGAAAAGAGCCGTTCGGATTGTTGATAATCCCATTCTTACGGATCGATTGGAACCTCTGGGTCTGCGGAGGGACTTCAGTTTCCTCTGTATTTTGTACCGTATGTTCCATGGGGAGTGCTCAGAGGAATTGTTCGAGATGATACCAACATCTCGTTTTTACCATCGAACCTCCCGCCACCGGAGTAAAGTTCATCCATACTACGTGGTGCCACTACATTCATCCACAGTGCGTTTCCAGAGATCTTTTTTGCCACGTACCATCCGGCTATGA

Protein

MTINAGVPQGSVLSPTLFILYINDMLSIYGMHCYADDSTGDVRYIGHQILSRSVVQERHSKLVFEVENSLGRASEWGEVNLVQFNPLKTQVCAFTAKKDPFVMAPQFQGVSLQPSKNIGILGLDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLLLYKAQVRHRVEYCSHFWAGAPKYQLLPFDSIQKRAVRIVDNPILTDRLEPLGLRRDFSFLCILYRMFHGECSEELFEMIPTSRFYHRTSRHRSKVHPYYVVPLHSSTVRFQRSFLPRTIRL

Cofactor

pyridoxal 5'-phosphate

Uniprot

Q6UV17   A0A3S2LP03   A0A3S2KYN2   A0A3S2LQP1   A0A3S2NTH0   A0A3S2NMS5   + More
A0A3S2NHP4   A0A3S2NMX8   A0A3S2L424   A0A3S2P9Q3   A0A2H1VFZ3   A0A0P4VXU0   A0A3D5S1K1   A0A2H1WCG9   J9GT67   T2M6M7   A0A1E1XGQ7   A0A1Y1S3P2   A0A3S2TFH4   A0A131Y4I8   T2M4I6   A0A147BU27   A0A147BJ69   A0A131Y3E3   A0A131Y4Q4   A0A0K8RPQ6   A0A0P4VPK5   A0A0P4VVV8   A0A147BQ97   A0A1E1X2P5   A0A131XT39   A0A090XE26   A0A147BNQ9   A0A1E1XN74   A0A1E1XNW6   A0A1G4M3N1   A0A147BI04   A0A131XV56   A0A1E1XNL1   L7MAD0   V5H8T0   A0A147BJZ1   A0A1G4M5I2   A0A131XQR9   A0A1E1X2T1   A0A147BBR8   A0A2G8KET5   A0A146QVS2   A0A146PGB4   A0A146T2W5   A0A1E1XM20   A0A2B4RTL1   A0A147BKN8   A0A131XU84   A0A2H9T4Q5   A0A146SBG5   A0A0P4VTV9   A0A2H9T3F5   A0A1E1XGC7   A0A1E1X2R3   A0A147BMA3   A0A131Y2C9   A0A1E1XN53   A0A147BL51   A0A147BB29   A0A2B4S3A8   A0A147BLW3   A0A1E1XVU2   A0A147BLD9   A0A147BK71   A0A147BMW1   A0A147BLD0   A0A3P9IMI8   A0A0P4VX79   A0A147BMF5   A0A3P9H8U4   A0A3P9IP68   A0A2H9T4F1   A0A3Q2ZQH6  

Pubmed

30148503    23251564    24065732    28503490    28345194    25970599    + More
29652888    29209593    25576852    25765539    29023486    29150518    17554307   

EMBL

AY359886    AAQ57129.1    RSAL01002067    RVE40593.1    RSAL01000487    RVE41561.1    + More
RSAL01000422    RVE41792.1    RSAL01000090    RVE48098.1    RSAL01000002    RVE54942.1    RSAL01003136    RVE40332.1    RVE55041.1    RVE55094.1    RSAL01000171    RVE45150.1    RSAL01000164    RVE45343.1    ODYU01002162    SOQ39302.1    GDRN01105059    JAI57791.1    DPOC01000269    HCX22453.1    ODYU01007423    SOQ50184.1    AMCI01002135    EJX03495.1    HAAD01001474    CDG67706.1    GFAC01000919    JAT98269.1    LWDP01000391    ORD92879.1    RSAL01000193    RVE44603.1    GEFM01002394    JAP73402.1    HAAD01000593    CDG66825.1    GEGO01001118    JAR94286.1    GEGO01004630    JAR90774.1    GEFM01002419    JAP73377.1    GEFM01002324    JAP73472.1    GADI01001229    JAA72579.1    GDRN01111278    JAI56803.1    GDRN01111277    JAI56804.1    GEGO01002473    JAR92931.1    GFAC01005665    JAT93523.1    GEFM01006421    JAP69375.1    GBIH01002577    JAC92133.1    GEGO01003312    JAR92092.1    GFAA01002657    JAU00778.1    GFAA01002479    JAU00956.1    FLMD02000154    SCV66010.1    GEGO01005479    JAR89925.1    GEFM01006250    JAP69546.1    GFAA01002514    JAU00921.1    GACK01003803    JAA61231.1    GANP01010944    JAB73524.1    GEGO01004295    JAR91109.1    FLMD02000280    SCV66640.1    GEFM01006417    JAP69379.1    GFAC01005646    JAT93542.1    GEGO01007187    JAR88217.1    MRZV01000639    PIK46517.1    GCES01126385    JAQ59937.1    GCES01143686    JAQ42636.1    GCES01099194    JAQ87128.1    GFAA01003161    JAU00274.1    LSMT01000297    PFX20951.1    GEGO01004056    JAR91348.1    GEFM01005904    JAP69892.1    NSIT01000239    PJE78188.1    GCES01108388    JAQ77934.1    GDRN01111334    JAI56796.1    NSIT01000412    PJE77717.1    GFAC01000861    JAT98327.1    GFAC01005670    JAT93518.1    GEGO01003518    JAR91886.1    GEFM01002397    JAP73399.1    GFAA01002726    JAU00709.1    GEGO01003895    JAR91509.1    GEGO01007438    JAR87966.1    LSMT01000193    PFX23886.1    GEGO01003658    JAR91746.1    GFAA01000066    JAU03369.1    GEGO01003794    JAR91610.1    GEGO01004248    JAR91156.1    GEGO01003274    JAR92130.1    GEGO01004132    JAR91272.1    GDRN01111326    JAI56798.1    GEGO01003427    JAR91977.1    NSIT01000271    PJE78081.1   

Proteomes

UP000283053    UP000230750    UP000225706    UP000265200    UP000264800   

PRIDE

Q6UV17    L7MAD0   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF01585   G-patch
PF04939   RRS1
PF00282   Pyridoxal_deC
PF01873   eIF-5_eIF-2B
PF08159   NUC153
PF00458   WHEP-TRS
PF02460   Patched
PF00096   zf-C2H2
PF03372   Exo_endo_phos

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR034653   SPF45_RRM       
IPR003954   RRM_dom_euk       
IPR000467   G_patch_dom       
IPR040052   RBM17       
IPR035979   RBD_domain_sf       
IPR007023   Ribosom_reg       
IPR015424   PyrdxlP-dep_Trfase       
IPR002129   PyrdxlP-dep_de-COase       
IPR021115   Pyridoxal-P_BS       
IPR015421   PyrdxlP-dep_Trfase_major       
IPR015422   PyrdxlP-dep_Trfase_dom1       
IPR010977   Aromatic_deC       
IPR016190   Transl_init_fac_IF2/IF5_Zn-bd       
IPR002735   Transl_init_fac_IF2/IF5       
IPR016189   Transl_init_fac_IF2/IF5_N       
IPR036322   WD40_repeat_dom_sf       
IPR040382   NOL10/Enp2       
IPR012580   NUC153       
IPR001680   WD40_repeat       
IPR000738   WHEP-TRS_dom       
IPR009068   S15_NS1_RNA-bd       
IPR030223   Dispatched       
IPR003392   Ptc/Disp       
IPR000731   SSD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF54928   SSF54928       
SSF53383   SSF53383       
SSF75689   SSF75689       
SSF100966   SSF100966       
SSF50978   SSF50978       
SSF47060   SSF47060       
SSF57667   SSF57667       

Gene 3D

3.60.10.10     3.30.70.330     3.40.640.10     3.90.1150.10    

CDD

cd12647  RRM_UHM_SPF45

ProteinModelPortal

Q6UV17   A0A3S2LP03   A0A3S2KYN2   A0A3S2LQP1   A0A3S2NTH0   A0A3S2NMS5   + More
A0A3S2NHP4   A0A3S2NMX8   A0A3S2L424   A0A3S2P9Q3   A0A2H1VFZ3   A0A0P4VXU0   A0A3D5S1K1   A0A2H1WCG9   J9GT67   T2M6M7   A0A1E1XGQ7   A0A1Y1S3P2   A0A3S2TFH4   A0A131Y4I8   T2M4I6   A0A147BU27   A0A147BJ69   A0A131Y3E3   A0A131Y4Q4   A0A0K8RPQ6   A0A0P4VPK5   A0A0P4VVV8   A0A147BQ97   A0A1E1X2P5   A0A131XT39   A0A090XE26   A0A147BNQ9   A0A1E1XN74   A0A1E1XNW6   A0A1G4M3N1   A0A147BI04   A0A131XV56   A0A1E1XNL1   L7MAD0   V5H8T0   A0A147BJZ1   A0A1G4M5I2   A0A131XQR9   A0A1E1X2T1   A0A147BBR8   A0A2G8KET5   A0A146QVS2   A0A146PGB4   A0A146T2W5   A0A1E1XM20   A0A2B4RTL1   A0A147BKN8   A0A131XU84   A0A2H9T4Q5   A0A146SBG5   A0A0P4VTV9   A0A2H9T3F5   A0A1E1XGC7   A0A1E1X2R3   A0A147BMA3   A0A131Y2C9   A0A1E1XN53   A0A147BL51   A0A147BB29   A0A2B4S3A8   A0A147BLW3   A0A1E1XVU2   A0A147BLD9   A0A147BK71   A0A147BMW1   A0A147BLD0   A0A3P9IMI8   A0A0P4VX79   A0A147BMF5   A0A3P9H8U4   A0A3P9IP68   A0A2H9T4F1   A0A3Q2ZQH6  

KEGG

101744003    no KO assigned | (RefSeq) uncharacterized LOC101744003

GO

GO:0003964   GO:0004519   GO:0003723   GO:0016021   GO:0005634   GO:0003676  

PANTHER

PTHR13288   PTHR17602   PTHR14927   PTHR45951:SF3  

Length:

284

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

2.75782000000001

Exp number, first 60 AAs:

2.75514

Total prob of N-in:

0.11091

outside

1  -  284

 

 

Pi

64.111382

Theta

73.031216

Tajima's D

-0.88497

CLR

9.643332

CSRT

0.159742012899355

Interpretation

Uncertain