SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15300
Pre Gene Modal
BGIBMGA005049
Annotation
PREDICTED:_probable_Rho_GTPase-activating_protein_CG5521_[Bombyx_mori]
Location
Bomo_Chr25(+):8563857-8597295      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 1.536 PlasmaMembrane   Reliability : 1.299
 

Sequence

CDS
ATGTTCACTAAAAAATCTCACCAGGATCTCAAAAAGTCAACTGTTAAAATACAGGACTCCAAAAAAGATTCTGCGACACGACTCAAACATTTAAAAATTATTTTAGAACATTTTGATTCAGATGAAGCTAAAACATATTTTGAAAACAACTTCAGTCATGTTTACTTCATATTGTATGATAATTTTATACAAGCCGAAAATAACCTGCGTCAAAAAGTTCACAAGGCTGGTAAAGAAGAATTAGAAGCAGCTCTGCTACTGCTGGAAAAAGTACTTTGTCTCTTACCAGAATTGCTTGGAAAAAGATGGCAGTTACACTCATTGACAAGGATATTCTCGAAATTGCTGCACAGTGCAAACTCACAAAAATTAAGGGCAGAGGCAATAAAATTTTTTCTCCTTTGGTATCAAGCGCTAGGCGACAATGCTCCCTTCGAGGTCCACAAAATGTTCGCGCTACTCATACCTGGTATGCCAGATCCTGGCAATGTGACCAGGCCATCACCGCTAAATCCAAAACCATTTGATATAACAACCAATCCACACGAAACAGGCGATTTTAGTATGGAAGACATTATGCAACATCCCAATTTCTCAACTGTAATTGACAACGCCAAGAAAGTCGTCGTGGAACAGACCTCGTCAGGAATAATGGGAAAGATTGCTAATGTATCCGCATCCATCTTCCACGACACGAATGCACTGAACCCCGTACAAAGCGTCGAGATACAACCTCTCCTGCCACCGAGTGCGAATGAAAAATCTGTTGATAATGAAACCAAGTATTTTTTTGAGATACTTCTCGATGGAATGGCGACGTCCGTGACGAAATTGCAATGGAGAGATAGATCGCACGCCAAGGCAATGAGATGCTTCGCGTTTTTACTTGAAAAATTTAAGCAGTATTATTTGCCCGTAATTTGTCCACAGTTTAATCACAAGAATTCTTTGTATAAACCTAACTTAGATTTGCCAGTACAGCACAACATACTAGAAGATGATTTTGTCTTATGCCGAGTAACTCTTATCAAGTGGGTCGCCAACTACGCGCATTTCATGAAGAAACAGGGTAGTGATGGCGGACAACCTTCGTCTATGACCAGTATCGGGTCTCATCTTCCGCATTCGAACACTCCCACCCCAGCCACGTCTCTCCATCACGAAGAAGAGACATCCTTCACTGTAGGACACCCATCGGACTCCAGTCGCGCATCTTCGCACGACTCCGCATCTAATACACCACATCCAAGTTTGGAATCAGGATCAGGAGTCTATGAAGAGCTAAGTTCAGAGCAAGTAGTACGTGACGTGCTATGTTGCTCCTCGCGGGAACACGTAGACTTCACTATAGAAGTCTTACGTCAAGCGTTTCTATTGCCTTTCTCGCACGCTGCTGCCATCCGCCGCGTCATAGCTCTATACAAAGATTGGATACAAATGAATGTATCAGAGATCCCACCGTTCTTAATGGAGAGCACGTACGAGCAGCAGCTGGCGCAGGGGGAGCCCGCGGTGCCGCCCAGGCGACTGCGGAACGACTCCTACCTCGGGGCTCTCGGACGAGACAACGTCATGGTTCGGGCTGGCATGCAGAACGTGCTGCAAGTGTTCATGACGCAAGCCGCGCACGTGTTCGTTGGGAGCGGCTGGACCGTGCTGCCGGCGGGCGCCGCCTCCCCGCAGCAGCTGCTGGACGAGCAGACCGACACGTGCAAGCGCGTGCTCAACATATACCGCTACATGGTCATGCACGTCGCCATGGACTATAACACTTGGGAACAGCTCTTATTGGTGTTACTACAGATCACATCATTGGTACTCACTAAAATTCCTCCAAAGAAAAAACAAGAAACATTAGGTGGTAATCTAGCGCCCGCATTGTTTCAAACGTTGATAGTGACATGGATAAAAGCGAACCTGAATGTGGCCGTCAAATCCGAATTGTGGCAGAACTTTATGGAACTGCTCATGCGCCTGACGCATTGGGAAGATCTGATCAAAGAATGGGCTAAAACGATGGAGACTCTGACGCGTGTACTGGCCCGGCACGTGTACTCGCTGGACCTGTCGGAGGCGAGCGGGGGCAGCGCGCGGGGAGGCCGGCGCCCGCCCGCCGCGCCCGCCGTCCTGCCGCGCCCCCCCGCACTGCACCACGCCGTCTCCGTCGTCTCTAACACCGACACTAGGACGCCCGGTAAATCTCCCAAAGTGAACCACGAAACTCATCCCCGTAAGGAGACCGCCACTCGCCGACAGCTCACACGGTGCAGGAGCGACCCGCATCTCAGTAAACAAGCCCGCGTTGAAGAAGTAATCATAGTACCTACTCACAGAAAACCAAGGAGATGGTACTCACTTGATTCTCTAAGAAATTCTCTATCGCAAAACGAGGAACGCGACTCGGCAAGTGGTTCTAGATCACCATCTCCAGCGCCATCTAGCGGCGTCGAAAGTAGTTCTATAAAGGACTCACCACTGCAAATCGATTTAGTCTCCGACGGTGCGAATGTTTCGGAGTGGGGCAGCGGCGATGCGGAGACGGGTGGCGGCGCGTGCGGCGTGGTGCTGGGCGGGCGGGCGCGCGGCTGGCTGCCCGACGTGGCGGCCGTCATGTGGCGCCGCATGCTGGCCGCGCTCGGCGACCCCAACCTGCTGCGGGACCCCGCGCACCACGCGCACTTCTTCAACTACCTCATACATCTCAACTCTACCCTCCTCAAGATCAGCGCAAACCAAACTCTAAATGGCAACACCGAAATTCACGTACCATTCAACTTGGTGGCGGGATGGTGTCTCGAGGCGGAAGCATTGCCTCCTACACACCGAGCCGGAAAACTGCTCGCTCTACGGTTGCTGTGCGAGTCCACACAGGCTCAGGGGCCGGGCGCGCCTTCCTCCTGCAACAACCAACTGCACCTCGCGCACTTGCATCTCTACCAGCGAGCTTTACATCACGGTTTGACGGGCGAGGATCGGTCCGTAGTGGACGTACTGGTGGAGCACGCAGCGCCGAGGTACTTGTCGCTAGCCCTCGACGGGTACTCACTGCTCCTACTAGACTTCGTGCACGCATCGACTGTCGTACTGAACTCGTCCGATATGGGACCATCGTGTCCTCGCACAGCCGCCGTAACGTTCCTAGGATCTTTGCTGTCATTACCCGATGGATTGATGAATGCCCCCATGCTGCAACCATATCCTCATCAGTACAATACTGTTTCTTGTCCGGATCTCAAGGAACACGTGTTGAACATAGTGGTGCGCGTGTGTCGCCGGGAAGGTGCGGGTGCGGCGCGTTGTGCGGGCGCGTGCGCACTCACTGCGCACGTCACGCAGATGCTCGCCACACGGACCGCGTGTCCCAGGCTACCCTCCTACGTCACGTGTTTGCTGCAAATGCTCATGATGAAAAACAAAAACATTGCTAAAGTTGTCAGCGATTGCATATTAGTGCTTGCCGATTACACTGACCGTATTGTAGAGATGTACCCAGGACTTGCTGGAAAAATAATTCGATGGATCTGCGCATGCTTGGCCCAACTTTCGACCAGCTGCCATCGTGACACCGTCAAACCACTGGCTGGGTCACTGCTGCTGTGCTTGGCCGAGTTTGCGGTGCGTTGCGGACCTCAGTACTTAATGGAAGAGAAGGATGGAGAACAAACACTTTTGCTGTTGATTTTTAAGGTGTTGTACGCGGTTATGAAAGGAGCAAACGGATCCGACATTGAAGGCCTAAGTCTGCCGGTGGATGATGACTTCGATCCAAATATACAGTTGGATAATCTCGGGCCTAAAACTATTCCGGCATCAACGATCGACGTCAAGCTTTGGGCTCAAACGATATGCACTCAGCTGGTATTGTACCTCGGGCATTGGCCTCTCTGGAGCGGATGCCAACTCTCCTGTCGTGTTTCCGAGCAACACGACAGTCCGTTACTGGGCGAGGAGCTGGGCCCCGCCGTGCTGACCGCGCCCAACATACAGCTGATGCGGTTCAGCGATTCGACTCTGGCCTCGCTCATTGAGCTGCCGGCCCTCGACCTGCCCGCCAGAGCCGGGACTACACCAGGTCTGACGACGTCGGAGCGGCAGGTGCGCGTGCTGCTGCGCGACATCGGCGGCAAGGCGTGCTGGGACGCGTCCGCGCTGTACTTCGACCCGTCGGGGGGGCAGCTCGAGGCGCCCGAACCGCTACCCCTACCCGAGAGCAACGAATGTCCAAGAGAAAACACACTCTCGTCTTTACCGCCCCCTCTGCCCCCGGACCTGCTACCCGACTACAAAAATTGCCCACCGGACAAACACCAACTGGATCATGTGCTGGCCTATATCGGTCGAACGTCGCCCGAAGTGGTGTGCGGTAGGAGACTAGACGAGGCGGGTCCGTCGCCGCTGCCGCCGGGCGCTGAGGACGAGCTGGTGGCGGCGCTGGTGGCGCATCGGAACCAAGAGCGGGCGTACCTCGCTAACAAAGACAATGATGAAGAGGTGGAGCTGGTCGAGACGACAGCGGAGCCGGCCCCGGGCCCGTTCTCGCAGTGCAGGCTGTTCCTCGCGCAGCTGGGCACGCTCGCGCCCGCCAGGCGGAGCCACGCGTACCTGCTGCGCCGCACCGACCGACTGCTGCGGGAGCTCAGGAACCTCGACGCGCAGAGATGTCGTGAGACGCACAAAGTGGCTGTCATATATGTTGGAAAGGGACAAGAGACACGGAACGAAATACTCTCGAACCGATGCGGCAGTCCCGCTTATGAAGCCTTTTTGGCTGCACTCGCTTGGGAGGTGGAGCTGGAGAGTCATGTGGGGTTCACCGGGGGGCTGCGGGGCGGCGGGGCGGGGGTCAGCGCGCCGTACGCCGCCACGCTCACGTTCGAGGCGCTGTTCCATGTCGCCACGCGCATGCCCGCCGACACACCCGATGCCATACTCAACAAGACTCGCCACTTGGGAAACGACGAGGTTCATGTCGTATGGAGCGAGCATTGGCGTCCATACAAACGGGATACTCTGCCGACCCAGTTCTGTGACGTACTTATTGTGCTGTATCCACTACCCGGTGGGCTGCTGCGATGTACTATCACAAGGAAGCCTGATGTGGGCGCGTTCGGTCCGGTGTGGGAGGAGAGCGTGGTGGGCGTGGCGGGGGGCGCCGCGCTGGTGCGGGGCGCGGTGACGGCGGGCGGGCGCGCCGTGCGGGCCACCATGCCGCTGTACCAGCACGCGTACACGGAGCGGGCGCGCTGCCTCGACGCGCTCACGCACCACCACACGCTGCACACCTCCTACGAACGGTTCGTCGAGCGCGTGCGCGACCCGCTCCCCGCGCCCCTCTCGCCGCACGCAGCCGCTCTGCTGGACGCCGGCGCGAGCGCGTGGAGCGGCAGCTCGGAGTCGCACAGCGTGTCGCCGCGGCCCGCCAAGCGCCTGGGACCGTTCAAGCGGCTGCCGCAGGCGTCGGGCGGGCCCCACACCGCGCCCCCCCTCTCCGACCCCGCGCACCCGGCGCCCCCCGCCCGCAGAAACCGGTGA
Protein
MFTKKSHQDLKKSTVKIQDSKKDSATRLKHLKIILEHFDSDEAKTYFENNFSHVYFILYDNFIQAENNLRQKVHKAGKEELEAALLLLEKVLCLLPELLGKRWQLHSLTRIFSKLLHSANSQKLRAEAIKFFLLWYQALGDNAPFEVHKMFALLIPGMPDPGNVTRPSPLNPKPFDITTNPHETGDFSMEDIMQHPNFSTVIDNAKKVVVEQTSSGIMGKIANVSASIFHDTNALNPVQSVEIQPLLPPSANEKSVDNETKYFFEILLDGMATSVTKLQWRDRSHAKAMRCFAFLLEKFKQYYLPVICPQFNHKNSLYKPNLDLPVQHNILEDDFVLCRVTLIKWVANYAHFMKKQGSDGGQPSSMTSIGSHLPHSNTPTPATSLHHEEETSFTVGHPSDSSRASSHDSASNTPHPSLESGSGVYEELSSEQVVRDVLCCSSREHVDFTIEVLRQAFLLPFSHAAAIRRVIALYKDWIQMNVSEIPPFLMESTYEQQLAQGEPAVPPRRLRNDSYLGALGRDNVMVRAGMQNVLQVFMTQAAHVFVGSGWTVLPAGAASPQQLLDEQTDTCKRVLNIYRYMVMHVAMDYNTWEQLLLVLLQITSLVLTKIPPKKKQETLGGNLAPALFQTLIVTWIKANLNVAVKSELWQNFMELLMRLTHWEDLIKEWAKTMETLTRVLARHVYSLDLSEASGGSARGGRRPPAAPAVLPRPPALHHAVSVVSNTDTRTPGKSPKVNHETHPRKETATRRQLTRCRSDPHLSKQARVEEVIIVPTHRKPRRWYSLDSLRNSLSQNEERDSASGSRSPSPAPSSGVESSSIKDSPLQIDLVSDGANVSEWGSGDAETGGGACGVVLGGRARGWLPDVAAVMWRRMLAALGDPNLLRDPAHHAHFFNYLIHLNSTLLKISANQTLNGNTEIHVPFNLVAGWCLEAEALPPTHRAGKLLALRLLCESTQAQGPGAPSSCNNQLHLAHLHLYQRALHHGLTGEDRSVVDVLVEHAAPRYLSLALDGYSLLLLDFVHASTVVLNSSDMGPSCPRTAAVTFLGSLLSLPDGLMNAPMLQPYPHQYNTVSCPDLKEHVLNIVVRVCRREGAGAARCAGACALTAHVTQMLATRTACPRLPSYVTCLLQMLMMKNKNIAKVVSDCILVLADYTDRIVEMYPGLAGKIIRWICACLAQLSTSCHRDTVKPLAGSLLLCLAEFAVRCGPQYLMEEKDGEQTLLLLIFKVLYAVMKGANGSDIEGLSLPVDDDFDPNIQLDNLGPKTIPASTIDVKLWAQTICTQLVLYLGHWPLWSGCQLSCRVSEQHDSPLLGEELGPAVLTAPNIQLMRFSDSTLASLIELPALDLPARAGTTPGLTTSERQVRVLLRDIGGKACWDASALYFDPSGGQLEAPEPLPLPESNECPRENTLSSLPPPLPPDLLPDYKNCPPDKHQLDHVLAYIGRTSPEVVCGRRLDEAGPSPLPPGAEDELVAALVAHRNQERAYLANKDNDEEVELVETTAEPAPGPFSQCRLFLAQLGTLAPARRSHAYLLRRTDRLLRELRNLDAQRCRETHKVAVIYVGKGQETRNEILSNRCGSPAYEAFLAALAWEVELESHVGFTGGLRGGGAGVSAPYAATLTFEALFHVATRMPADTPDAILNKTRHLGNDEVHVVWSEHWRPYKRDTLPTQFCDVLIVLYPLPGGLLRCTITRKPDVGAFGPVWEESVVGVAGGAALVRGAVTAGGRAVRATMPLYQHAYTERARCLDALTHHHTLHTSYERFVERVRDPLPAPLSPHAAALLDAGASAWSGSSESHSVSPRPAKRLGPFKRLPQASGGPHTAPPLSDPAHPAPPARRNR

Summary

Uniprot
A0A3S2P8Z3   A0A194RLA0   A0A194PH80   A0A1W4WKC0   A0A1W4WKE0   A0A1Y1MVM0   + More
A0A1Y1MVL2   A0A1B6DUN2   A0A1B6C2Q0   A0A1S4FWX0   Q16LN7  
Pubmed
26354079    28004739    17510324   
EMBL
RSAL01000001    RVE55308.1    KQ460045    KPJ18095.1    KQ459604    KPI92408.1    + More
GEZM01019356    JAV89693.1    GEZM01019355    JAV89694.1    GEDC01007918    JAS29380.1    GEDC01029759    JAS07539.1    CH477898    EAT35251.1   
Proteomes
UP000283053    UP000053240    UP000053268    UP000192223    UP000008820   
Pfam
PF02145   Rap_GAP
Interpro
IPR027107   Tuberin/Ral-act_asu        + More
IPR000331   Rap_GAP_dom       
IPR035974   Rap/Ran-GAP_sf       
IPR016024   ARM-type_fold       
SUPFAM
SSF111347   SSF111347        + More
SSF48371   SSF48371       
Gene 3D
3.40.50.11210    
ProteinModelPortal
A0A3S2P8Z3   A0A194RLA0   A0A194PH80   A0A1W4WKC0   A0A1W4WKE0   A0A1Y1MVM0   + More
A0A1Y1MVL2   A0A1B6DUN2   A0A1B6C2Q0   A0A1S4FWX0   Q16LN7  
PDB
1SRQ     E-value=4.59364e-10,     Score=161

Ontologies

KEGG
101742620    no KO assigned | (RefSeq) probable Rho GTPase-activating protein CG5521
GO
GO:0005096   GO:0051056   GO:0005634   GO:0030286   GO:0005524   GO:0016887   GO:0003688   GO:0006270   GO:0042555   GO:0015930  
PANTHER
PTHR10063  

Topology

Length:
1843
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.22158
Exp number, first 60 AAs:
0.0008
Total prob of N-in:
0.00099
outside
1  -  1843
 
 

Population Genetic Test Statistics

Pi
279.003591
Theta
190.786233
Tajima's D
1.53411
CLR
0.288185
CSRT
0.791760411979401
Interpretation
Uncertain
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