Gene

KWMTBOMO15294  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005048

Annotation

PREDICTED:_dynein_beta_chain?_ciliary-like_[Bombyx_mori]

Location

Bomo_Chr25(+):8488253-8490367      View in EpiBrowser

Full name

Dynein beta chain, ciliary      

Location in the cell

Cytoplasmic   Reliability : 2.863

CDS

ATGGGAGATAAAGAAGATGTCGATACTCGTCTGGAGTTTATGAGTGAATACCTACTGAAGACATTAAAGCAAAAGGCAGACAAGTGGGCTAAGTTCATCACTGGAGATGAAAGACATATTCTATTTAGATATTTTGATATGCCAAAATATGACATAATAGTCTTTCGAATGAACACGGCTGGCATGCTAACATGTTCGACAAGTTTTCCACCTATAAGCAGGGGAAAGATGGTTTATTTCCTAAGAAATGTTGACGATAAAATAACACAAGCCAATTTTCGTAAGGCAGTAACTATAGGTGAAATGTCAGGTAACGTTCTGATGGATCTGAGCGTGTTGGCCGATGAAGTAATAGGGCCTATGCTTTGTAATCCAGAGAATCAAAAGGGATGGCCTAAAATTGTGCAAAACGATATGAAGAGACATGTTAATGATTTAAGGAATTTAATGCATCAGGTTGGGATATAA

Protein

MGDKEDVDTRLEFMSEYLLKTLKQKADKWAKFITGDERHILFRYFDMPKYDIIVFRMNTAGMLTCSTSFPPISRGKMVYFLRNVDDKITQANFRKAVTIGEMSGNVLMDLSVLADEVIGPMLCNPENQKGWPKIVQNDMKRHVNDLRNLMHQVGI

Subunit

Consists of at least two heavy chains (alpha and beta), three intermediate chains and several light chains.

Similarity

Belongs to the dynein heavy chain family.

Keywords

3D-structure   ATP-binding   Cell projection   Cilium   Coiled coil   Cytoplasm   Cytoskeleton   Direct protein sequencing   Dynein   Flagellum   Microtubule   Motor protein   Nucleotide-binding   Repeat  

Feature

chain  Dynein beta chain, ciliary

Uniprot

A0A212FN95   A0A2H1W397   A0A194RL06   A0A2W1BQS9   A0A1J1ICP0   U4UUA0   + More
N6SZK6   A0A1B6J8D1   E0VLR4   A0A158NAW0   F4X253   B3RPT9   A0A369S6B3   A0A195DRI8   A0A026WWU2   A0A3L8DAL8   A0A1B6GCI3   A0A195CK31   A0A195EWG1   A0A1A9VM51   A0A2G8JR65   A0A3M6ULY8   A0A1I8N7B4   W4ZLH8   W4ZGL9   A0A1B6M4U6   A0A1A9Y4L0   A0A1B0BBD8   A0A1B0GE03   P23098   A0A2P8XLY9   A0A1B0AHI9   A0A182V683   A0A182TGC9   A0A2B4RRR8   Q9U3Y5   Q5LJN5   B9U2A6   P39057   A0A1A9W2L8   A7RKK0   B9U2A4   A0A182T979   C3Z7I5   A0A2C9JGW7   A0A0Q9WSZ3   B4NAN8   A0A3M7PZV5   W8C7H2   A0A3B0K3R2   A0A182MPJ3   B9U2A1   A0A0Q9X0G4   B5DWU4   I7L9G6   A0A1B6BXH8   A0A2T7Q0D5   B7FF24   A0A060XHG4   A0A182L9X8   A0A1S3IDL2   A0A1S3IEP3   A0A3P8Z340   A0A3P9AKI4   G3NCH8   A0A1B0CQ39   A0A3Q3MZW3   A0A1S3Q6H3   R7T4G3   A0A182JYB8   A0A182NRZ1   A0A182FNE6   A0A182WSN1   A0A182VZH4   A0A1W4X3T6   W5N2W8   A0A182HLI2   A0A084WBP9   F7AUA7   F7AU91   F6Y3Y6   A0A3Q0JZB0   A0A1L8EN41   A0A336M8G6   A0A182QZC2   A0A336KD59   A0A182RUM3   M7BK89   K1PAG1   A0A154PIG1   A0A2R7WSX8   A0A182IPA4   A0A3B4UG09   A0A182P461   W5N4Y2   A0A1W4XNR1   I3KTY1   B9U292  

Pubmed

22118469    26354079    28756777    23537049    20566863    21347285    + More
21719571    18719581    30042472    24508170    30249741    29023486    30382153    25315136    1830927    1833761    11250194    29403074    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    1830928    17615350    18563158    15562597    17994087    18057021    19011613    30375419    24495485    15632085    15528405    24755649    20966253    25069045    23254933    24438588    12481130    15114417    20431018    27762356    23624526    22992520    25186727   

EMBL

AGBW02006642    OWR55207.1    ODYU01006049    SOQ47559.1    KQ460045    KPJ18099.1    + More
KZ149994    PZC75477.1    CVRI01000047    CRK97522.1    KB632370    ERL93730.1    APGK01058385    KB741288    ENN70693.1    GECU01012250    JAS95456.1    AAZO01003396    AAZO01003397    DS235281    EEB14320.1    ADTU01010327    ADTU01010328    ADTU01010329    ADTU01010330    GL888565    EGI59469.1    DS985242    EDV28243.1    NOWV01000062    RDD42081.1    KQ980612    KYN15119.1    KK107077    EZA60545.1    QOIP01000010    RLU17527.1    GECZ01009628    GECZ01003735    JAS60141.1    JAS66034.1    KQ977642    KYN01090.1    KQ981954    KYN32224.1    MRZV01001382    PIK38257.1    RCHS01001219    RMX54661.1    AAGJ04129462    AAGJ04129463    AAGJ04129464    AAGJ04129465    GEBQ01009032    JAT30945.1    JXJN01011414    CCAG010012076    CCAG010012077    X59603    PYGN01001746    PSN33021.1    LSMT01000358    PFX19499.1    AF210453    AAF21041.1    CP007106    EAL24525.4    EU417452    ABY85408.1    D01021    DS469516    EDO47920.1    EU417450    ABY85406.1    GG666590    EEN51781.1    CH964232    KRF99354.1    GU937422    ADF80169.1    KRF99355.1    REGN01008053    RNA04543.1    GAMC01000542    JAC06014.1    OUUW01000005    SPP80619.1    AXCM01003407    EU417447    ABY85403.1    KRF99353.1    CM000070    EDY67828.2    BK005628    DAA05701.1    GEDC01031315    JAS05983.1    PZQS01000001    PVD39135.1    BK006568    DAA06397.1    FR905388    CDQ78911.1    AJWK01022982    AMQN01015792    KB312221    ELT87666.1    AHAT01000316    AHAT01000317    APCN01000904    ATLV01022415    KE525332    KFB47643.1    EAAA01000525    EAAA01000526    EAAA01000527    EAAA01000528    EAAA01000529    AAMC01064836    AAMC01064837    AAMC01064838    AAMC01064839    AAMC01064840    AAMC01064841    AAMC01064842    AAMC01064843    AAMC01064844    AAMC01064845    CM004483    OCT60754.1    UFQS01000693    UFQT01000693    SSX06260.1    SSX26614.1    AXCN02000255    UFQS01000316    UFQT01000316    SSX02804.1    SSX23175.1    KB540685    EMP32433.1    JH816371    EKC20777.1    KQ434924    KZC11645.1    KK855459    PTY22667.1    AHAT01000363    AERX01002023    AERX01002024    AERX01002025    AERX01002026    AERX01002027    EU417438    ABY85394.2   

Proteomes

UP000007151    UP000053240    UP000183832    UP000030742    UP000019118    UP000009046    + More
UP000005205    UP000007755    UP000009022    UP000253843    UP000078492    UP000053097    UP000279307    UP000078542    UP000078541    UP000078200    UP000230750    UP000275408    UP000095301    UP000007110    UP000092443    UP000092460    UP000092444    UP000245037    UP000092445    UP000075903    UP000075902    UP000225706    UP000000803    UP000091820    UP000001593    UP000075901    UP000001554    UP000076420    UP000007798    UP000276133    UP000268350    UP000075883    UP000001819    UP000245119    UP000193380    UP000075882    UP000085678    UP000265140    UP000007635    UP000092461    UP000261640    UP000087266    UP000014760    UP000075881    UP000075884    UP000069272    UP000076407    UP000075920    UP000192223    UP000018468    UP000075840    UP000030765    UP000008144    UP000008143    UP000186698    UP000075886    UP000075900    UP000031443    UP000005408    UP000076502    UP000075880    UP000261420    UP000075885    UP000005207   

PRIDE

P23098    Q9U3Y5    Q5LJN5    P39057   

Pfam

PF08385   DHC_N1        + More
PF12780   AAA_8
PF18198   AAA_lid_11
PF03028   Dynein_heavy
PF17857   AAA_lid_1
PF12777   MT
PF17852   Dynein_AAA_lid
PF18199   Dynein_C
PF08393   DHC_N2
PF12774   AAA_6
PF12781   AAA_9

Interpro

IPR013594   Dynein_heavy_dom-1        + More
IPR035699   AAA_6       
IPR041658   AAA_lid_11       
IPR041228   Dynein_C       
IPR042228   Dynein_2_C       
IPR041466   Dynein_AAA5_ext       
IPR004273   Dynein_heavy_D6_P-loop       
IPR013602   Dynein_heavy_dom-2       
IPR042219   AAA_lid_11_sf       
IPR024743   Dynein_HC_stalk       
IPR024317   Dynein_heavy_chain_D4_dom       
IPR027417   P-loop_NTPase       
IPR042222   Dynein_2_N       
IPR041589   DNAH3_AAA_lid_1       
IPR035706   AAA_9       
IPR026983   DHC_fam       
IPR003593   AAA+_ATPase       
IPR030443   DNAH9       

SUPFAM

SSF52540   SSF52540       

Gene 3D

1.10.8.720     1.20.140.100     3.20.180.20    

ProteinModelPortal

A0A212FN95   A0A2H1W397   A0A194RL06   A0A2W1BQS9   A0A1J1ICP0   U4UUA0   + More
N6SZK6   A0A1B6J8D1   E0VLR4   A0A158NAW0   F4X253   B3RPT9   A0A369S6B3   A0A195DRI8   A0A026WWU2   A0A3L8DAL8   A0A1B6GCI3   A0A195CK31   A0A195EWG1   A0A1A9VM51   A0A2G8JR65   A0A3M6ULY8   A0A1I8N7B4   W4ZLH8   W4ZGL9   A0A1B6M4U6   A0A1A9Y4L0   A0A1B0BBD8   A0A1B0GE03   P23098   A0A2P8XLY9   A0A1B0AHI9   A0A182V683   A0A182TGC9   A0A2B4RRR8   Q9U3Y5   Q5LJN5   B9U2A6   P39057   A0A1A9W2L8   A7RKK0   B9U2A4   A0A182T979   C3Z7I5   A0A2C9JGW7   A0A0Q9WSZ3   B4NAN8   A0A3M7PZV5   W8C7H2   A0A3B0K3R2   A0A182MPJ3   B9U2A1   A0A0Q9X0G4   B5DWU4   I7L9G6   A0A1B6BXH8   A0A2T7Q0D5   B7FF24   A0A060XHG4   A0A182L9X8   A0A1S3IDL2   A0A1S3IEP3   A0A3P8Z340   A0A3P9AKI4   G3NCH8   A0A1B0CQ39   A0A3Q3MZW3   A0A1S3Q6H3   R7T4G3   A0A182JYB8   A0A182NRZ1   A0A182FNE6   A0A182WSN1   A0A182VZH4   A0A1W4X3T6   W5N2W8   A0A182HLI2   A0A084WBP9   F7AUA7   F7AU91   F6Y3Y6   A0A3Q0JZB0   A0A1L8EN41   A0A336M8G6   A0A182QZC2   A0A336KD59   A0A182RUM3   M7BK89   K1PAG1   A0A154PIG1   A0A2R7WSX8   A0A182IPA4   A0A3B4UG09   A0A182P461   W5N4Y2   A0A1W4XNR1   I3KTY1   B9U292  

KEGG

105841397    no KO assigned | (RefSeq) dynein beta chain, ciliary-like

GO

GO:0007018   GO:0003777   GO:0005524   GO:0030286   GO:0045503   GO:0051959   GO:0045505   GO:0008569   GO:0005930   GO:0005874   GO:0031514   GO:0030030   GO:0005737   GO:0042623   GO:0005858   GO:0016887  

PANTHER

PTHR10676   PTHR10676:SF257  

Subcellular location

Cell projection  
Cilium  
Flagellum  
Cytoplasm  
Cytoskeleton  
Flagellum axoneme  

Length:

155

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

6.16263

Exp number, first 60 AAs:

2.56453

Total prob of N-in:

0.46231

outside

1  -  155

 

 

Pi

26.529019

Theta

167.810027

Tajima's D

-0.790094

CLR

345.414404

CSRT

0.179041047947603

Interpretation

Uncertain