Gene

KWMTBOMO15283  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005158

Annotation

trafficking_protein_particle_complex_6b_[Bombyx_mori]

Location

Bomo_Chr25(-):8401090-8402002      View in EpiBrowser

Full name

DNA polymerase alpha subunit B      

Location in the cell

PlasmaMembrane   Reliability : 1.942

CDS

ATGGCCGACGACATCATATTTGAATTATTACATTCTGAAATTATAAATTATTCTATTGAAAAATTCAAGAATAACGATAATGGCGAAAAGGAAACTGATTTGTCTGTTGTCGAATACATCGGGTTTGCGGCAGGCTATAAAATCATGGAAAGATTAACGAGGGAATGGCCGCGTTTTAAAGATGAATTAGATACTATGAAATTCATATGTACAGATTTTTGGACTTGTATTTACAAAAAACAGATAGATAATCTTCGTACAAACCACCAAGGAGTTTATGTACTTCAAGATAATGCATTCCGTTTTCTAACAAATTTTTCTAATGGTCATCAGTACCTGGAATATGCTCCTAGATATGTTGCTTACACTTGTGGGCTCATTCGAGGTGGATTGGCTAATCTCTGTATTAACAGTATTGTCACAGCAGAAGTTCAGTCTATGCCTTCATGTAAATTTCATATACACGTTCAAAGAACATAA

Protein

MADDIIFELLHSEIINYSIEKFKNNDNGEKETDLSVVEYIGFAAGYKIMERLTREWPRFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQGVYVLQDNAFRFLTNFSNGHQYLEYAPRYVAYTCGLIRGGLANLCINSIVTAEVQSMPSCKFHIHVQRT

Description

May play an essential role at the early stage of chromosomal DNA replication by coupling the polymerase alpha/primase complex to the cellular replication machinery.

Similarity

Belongs to the DNA polymerase alpha subunit B family.

Uniprot

Q1HPK2   A0A2W1BKC0   S4PSA6   A0A1E1WI46   A0A3S2P2B6   A0A194PH68   + More
A0A194RKP7   A0A212FJA2   A0A2H1WZ21   A0A0L7LH06   A0A2J7QRY4   A0A1I8JWA6   A0A2C9GUL6   A0A1Y9H9M4   A0A1Y9IS63   A0A1C7CZV4   A0A240PM17   A0A1I8JV53   A0A1I8JTK3   A0A182K0N5   Q7QC03   A0A182RYF3   A0A240PMM8   A0A1Y9IVB0   A0A1Y9H301   A0A182Y771   A0A182SHZ8   V5FW02   A0A1W4XKP5   A0A1Y9G9Q3   T1DP14   A0A2M3ZBZ7   A0A2M4AR04   A0A1Q3FKA0   B0WF96   A0A2M4CMK3   A0A067REY7   Q17E67   A0A087Z0L9   A0A023EFH7   A0A2M4AQZ7   W5JQ82   U5EW98   N6U752   A0A1Y1NCN3   H9J6L6   A0A0K8TP59   A0A1B0CSJ7   A0A1L8DVZ2   A0A1B0DI74   U5EUE0   A0A1B6DIG2   A0A1B6M7R5   A0A1B6CGQ7   A0A1B6JC29   A0A1B6GJH5   A0A0L0BND8   A0A0A9WDS9   B3MSU3   B4NAT8   D3TRF6   A0A240SX99   A0A1B6DC05   A0A0K8VDB9   A0A1W4VTS6   A0A1A9W7C9   A0A1B6DML6   A0A1J1HIX1   A0A3B0K414   Q29BE4   B4GNU2   A0A2R7W936   A0A1A9VG02   A0A1I8MF74   B4HM25   R4FNN0   B4QYI6   B4PS42   B3P0V6   Q9VF82   B4JU44   A0A195CY59   E2ATA3   A0A1I8PBM2   B4M5Z7   A0A0J7KZ18   A0A069DW92   A0A1B0B2Q7   E2C0B9   A0A026WIH2   A0A336KFM6   E0V955   A0A224XVD7   A0A240SWM7   B4KAQ3   A0A0M3QYE7   A0A2C9JJ75   A0A195E6Q8   A0A195B1T0   A0A195F1M0  

Pubmed

28756777    23622113    26354079    22118469    26227816    20966253    + More
12364791    14747013    17210077    25244985    24845553    17510324    20920257    24945155    26483478    23537049    28004739    19121390    26369729    26108605    25401762    26823975    17994087    20353571    15632085    25315136    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    20798317    26334808    24508170    30249741    20566863    15562597   

EMBL

DQ443400    ABF51489.1    KZ149994    PZC75489.1    GAIX01000105    JAA92455.1    + More
GDQN01004426    JAT86628.1    RSAL01000001    RVE55323.1    KQ459604    KPI92393.1    KQ460045    KPJ18112.1    AGBW02008295    OWR53812.1    ODYU01012138    SOQ58278.1    JTDY01001220    KOB74491.1    NEVH01011882    PNF31348.1    AXCM01000066    AXCN02000218    APCN01000423    AAAB01008859    EAA08080.2    GALX01006626    JAB61840.1    GAMD01002365    JAA99225.1    GGFM01005323    MBW26074.1    GGFK01009879    MBW43200.1    GFDL01007139    JAV27906.1    DS231916    EDS26113.1    GGFL01002366    MBW66544.1    KK852730    KDR17521.1    CH477285    EAT44752.1    JXUM01135890    GAPW01005426    GAPW01005425    KQ568348    JAC08173.1    KXJ69037.1    GGFK01009880    MBW43201.1    ADMH02000650    ETN65448.1    GANO01001518    JAB58353.1    APGK01036917    KB740945    KB632197    ENN77480.1    ERL89997.1    GEZM01008998    JAV94660.1    BABH01019869    GDAI01001655    JAI15948.1    AJWK01026149    GFDF01003488    JAV10596.1    AJVK01062114    GANO01001519    JAB58352.1    GEDC01011870    JAS25428.1    GEBQ01008019    JAT31958.1    GEDC01024773    JAS12525.1    GECU01011048    JAS96658.1    GECZ01011429    GECZ01007336    JAS58340.1    JAS62433.1    JRES01001623    KNC21438.1    GBHO01038064    GBHO01038063    GBRD01005878    GDHC01021324    GDHC01015968    JAG05540.1    JAG05541.1    JAG59943.1    JAP97304.1    JAQ02661.1    CH902623    EDV30333.1    CH964232    EDW80902.2    EZ424008    ADD20284.1    GEDC01014084    JAS23214.1    GDHF01015375    JAI36939.1    GEDC01010391    JAS26907.1    CVRI01000006    CRK88000.1    OUUW01000005    SPP80739.1    CM000070    EAL27054.1    CH479186    EDW38825.1    KK854406    PTY15560.1    CH480815    EDW42062.1    GAHY01001224    JAA76286.1    CM000364    EDX12831.1    CM000160    EDW97462.1    CH954181    EDV49004.1    AE014297    AY071721    KX532055    AAF55178.1    AAL49343.1    ANY27865.1    CH916374    EDV91014.1    KQ977115    KYN05605.1    GL442545    EFN63348.1    CH940652    EDW59073.1    LBMM01001916    KMQ95548.1    GBGD01003295    JAC85594.1    JXJN01007687    GL451770    EFN78578.1    KK107185    QOIP01000012    EZA55815.1    RLU15906.1    UFQS01000309    UFQT01000309    SSX02712.1    SSX23086.1    DS234988    EEB09911.1    GFTR01002628    JAW13798.1    CH933806    EDW16790.2    CP012526    ALC47489.1    KQ979568    KYN20776.1    KQ976662    KYM78431.1    KQ981864    KYN34363.1   

Proteomes

UP000283053    UP000053268    UP000053240    UP000007151    UP000037510    UP000235965    + More
UP000076407    UP000075883    UP000075886    UP000075903    UP000075882    UP000075885    UP000075902    UP000075840    UP000075881    UP000007062    UP000075900    UP000075880    UP000075920    UP000075884    UP000076408    UP000075901    UP000192223    UP000069272    UP000002320    UP000027135    UP000008820    UP000069940    UP000249989    UP000000673    UP000019118    UP000030742    UP000005204    UP000092461    UP000092462    UP000037069    UP000007801    UP000007798    UP000092445    UP000192221    UP000091820    UP000183832    UP000268350    UP000001819    UP000008744    UP000078200    UP000095301    UP000001292    UP000000304    UP000002282    UP000008711    UP000000803    UP000001070    UP000078542    UP000000311    UP000095300    UP000008792    UP000036403    UP000092460    UP000008237    UP000053097    UP000279307    UP000009046    UP000092443    UP000009192    UP000092553    UP000076420    UP000078492    UP000078540    UP000078541   

PRIDE

Q1HPK2    H9J6L6    Q9VF82   

Pfam

PF04051   TRAPP        + More
PF04042   DNA_pol_E_B
PF10181   PIG-H

Interpro

IPR024096   NO_sig/Golgi_transp_ligand-bd        + More
IPR007194   TRAPP_component       
IPR037992   TRAPPC6/Trs33       
IPR007185   DNA_pol_a/d/e_bsu       
IPR016722   DNA_pol_alpha_bsu       
IPR019328   GPI-GlcNAc_Trfase_PIG-H_dom       

SUPFAM

SSF111126   SSF111126       

CDD

cd14944  TRAPPC6A_Trs33

ProteinModelPortal

Q1HPK2   A0A2W1BKC0   S4PSA6   A0A1E1WI46   A0A3S2P2B6   A0A194PH68   + More
A0A194RKP7   A0A212FJA2   A0A2H1WZ21   A0A0L7LH06   A0A2J7QRY4   A0A1I8JWA6   A0A2C9GUL6   A0A1Y9H9M4   A0A1Y9IS63   A0A1C7CZV4   A0A240PM17   A0A1I8JV53   A0A1I8JTK3   A0A182K0N5   Q7QC03   A0A182RYF3   A0A240PMM8   A0A1Y9IVB0   A0A1Y9H301   A0A182Y771   A0A182SHZ8   V5FW02   A0A1W4XKP5   A0A1Y9G9Q3   T1DP14   A0A2M3ZBZ7   A0A2M4AR04   A0A1Q3FKA0   B0WF96   A0A2M4CMK3   A0A067REY7   Q17E67   A0A087Z0L9   A0A023EFH7   A0A2M4AQZ7   W5JQ82   U5EW98   N6U752   A0A1Y1NCN3   H9J6L6   A0A0K8TP59   A0A1B0CSJ7   A0A1L8DVZ2   A0A1B0DI74   U5EUE0   A0A1B6DIG2   A0A1B6M7R5   A0A1B6CGQ7   A0A1B6JC29   A0A1B6GJH5   A0A0L0BND8   A0A0A9WDS9   B3MSU3   B4NAT8   D3TRF6   A0A240SX99   A0A1B6DC05   A0A0K8VDB9   A0A1W4VTS6   A0A1A9W7C9   A0A1B6DML6   A0A1J1HIX1   A0A3B0K414   Q29BE4   B4GNU2   A0A2R7W936   A0A1A9VG02   A0A1I8MF74   B4HM25   R4FNN0   B4QYI6   B4PS42   B3P0V6   Q9VF82   B4JU44   A0A195CY59   E2ATA3   A0A1I8PBM2   B4M5Z7   A0A0J7KZ18   A0A069DW92   A0A1B0B2Q7   E2C0B9   A0A026WIH2   A0A336KFM6   E0V955   A0A224XVD7   A0A240SWM7   B4KAQ3   A0A0M3QYE7   A0A2C9JJ75   A0A195E6Q8   A0A195B1T0   A0A195F1M0  

PDB

2BJN     E-value=2.20712e-51,     Score=505

KEGG

733029    K20304 trafficking protein particle complex subunit 6 | (RefSeq) trafficking protein particle comple

GO

GO:0048193   GO:0043087   GO:0003677   GO:0006260   GO:0003887   GO:0005634   GO:0006888   GO:0005802   GO:0005801   GO:0005737   GO:0016192   GO:0030008   GO:0016021   GO:0017176  

PANTHER

PTHR12817   PTHR23061  

Subcellular location

Nucleus  

Length:

159

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.36754

Exp number, first 60 AAs:

0.00319

Total prob of N-in:

0.03523

outside

1  -  159

 

 

Pi

156.601539

Theta

164.542204

Tajima's D

-0.172935

CLR

23.773523

CSRT

0.321933903304835

Interpretation

Uncertain