SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15277
Pre Gene Modal
BGIBMGA005038
Annotation
PREDICTED:_PH_domain-containing_protein_DDB_G0287875-like_[Amyelois_transitella]
Location
Bomo_Chr25(+):8331593-8339420      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.074
 

Sequence

CDS
ATGTTATCTGCTAAAGGTACTTCGATTGTTTCTGATGAGTGTTTTATGACTCCTGTGTCTTCTGTTGGTGACCTAATGGCAATGTCGCCATCGAAAAAAGAAGTCGCCACTAATCCTAACGACACCAGCGACTTGTTGACTGGCTCTGATTTCGGTAGCATATGTGATGTTACAATGCAGGAAGTGCCGCTGTATGATGACAATGTATTCATCGACGCAACGAGTCTAGACTACCTAGTTAAATGTACGGAATCAACACGACATCATAGTCAGATCGATAGAGGCAAAGAAAGCTTGTTTGTGAAGTTTGACCCTTTGTACGCTAATCAAATACGACAACAATCTGAATCTTCACATACAGAATCACCATCTGATGGCAACGAGGTAGATGTTGGCTACGAAACTGGAAGCAGTGTGTCGACTTTTACCGACAGTCACATTAGTTCACCGAAACAAACAATGTCTATTGGATCAGTACAGTCAATGCTTTGCAAAGAAAAGCCGACACAAGTAGTGCCACCTGTTGTTAATTCGGAAGTATCGAAAGTAATCATAAATCAAGTTCGCTCAACACCTGCTCTTGTTCGTAGTGTATCTGCTATATTGACTCCTACTCAAGTTGCCACAGAAAGACTCATTAGTATTGCAGGCAACACTCCCCCTACTGCTGCTCCGAGAAGTCCTAGAAACCGTAGCTATGGTGCACAGCAAGTTGACAGACTTCAATCGCTACGAATAATTTTACAAAAGCAAGATGAAGAAGTATTGCAACTAAGGCAGGAAAATAGAGAACTCAGGTCTAAATTACAGGAAGTTGAACATAAAAGTCAGAGAAGCATAGAGGAACTAGAATACAAAGTTAAAAAACTCTCTGAAGAAAAAGAAAAGTTTTTGGATAGAGAAAACAAATTATTTCAGCAGTTGAATGAAAAAAATATGGCAAACAAACAGATGAGTATTGTCATGGAAGAATATGAGAAAACGATTTCAGCATTAATTGGAGAACAGCAGAGGGAAAAAATTATGTCTAATGAAACAATAGAAAAGTTGACAGTCGAGAGAGATCAAGCTTTAGAACATTTGACAAGCATGGAAAGCTCCTTCAATGACTTACTAACAAAATATGAAAAATGCAAAAGCTTGATATTGGAATTCAAGGACAGAGAGAAAGTACATGAGAATAAGATGAACGAATATGAAGATGCCGTGAAGAAGTATGAAGAGTTGTACAGTAACTTAAAAAAGGTTACTTCTGAAAGCCTCTCTAAGGCAAATGAAACATTAGAGAGTATCACAAAAAATCATAATGCAGAAGTGACTAAGTTGAATGCCATTATTAAAAAGCATGAAATAACAATTGCGTCTTTACAAGAATCTCTGGCTCAGAAGAATCGAGATAATGAGGAATTGACAAGAATATGTGACCAGTTGATCAATGAAGTGCGTGAGATCGATCTTTTGTGGTGTTTCAATAGTCCTACAGTTCTAGAAAAATTCGTCACAACATGCGATAGTGACCATGGCGAAGGTTACAGTTCTTGTAACCTGGAAATGAGTCCAGCTGGACGAGCTCTCTTCCACGGTTATCTTGACACGAGAGTACCAAAGGACGGTCGCATCAAAAAAGCCGGATACTGCGCTATGAGATCGAAAATGCAAAGGAAATCATTCAAAAGAGCGTCCACGTTTGATTGGCATCTGTATAACACTTTAGTTTTAAAGGTCAGAGGCGACGGGAGAGCTTATTTACTTAACATCTCTACGGAGGGCTACTACGACATAACTTGGAACGATATTTACCATTATATTCTGTATACGAGAGGCGGACCGTACTGGCAAGTTGCGAAGATTCCATTCTCGAAGTTCGTTTTGGGATCAAAAGGCCGTTTGCAAGACAAACAAACGAGAATGCGTTTCGACAAAGTAACTCACTTCGGTATATCTTGCGGAGACAAGATAGTTGGTAAATTTAATCTAGAAATAGAGTACGTAGGTTTAGAATTCGATCCAACACACGATGAAGAATTTGCCTACGAAATGTACAAAACGGATAAATACATTGTTGCTGTCTAG
Protein
MLSAKGTSIVSDECFMTPVSSVGDLMAMSPSKKEVATNPNDTSDLLTGSDFGSICDVTMQEVPLYDDNVFIDATSLDYLVKCTESTRHHSQIDRGKESLFVKFDPLYANQIRQQSESSHTESPSDGNEVDVGYETGSSVSTFTDSHISSPKQTMSIGSVQSMLCKEKPTQVVPPVVNSEVSKVIINQVRSTPALVRSVSAILTPTQVATERLISIAGNTPPTAAPRSPRNRSYGAQQVDRLQSLRIILQKQDEEVLQLRQENRELRSKLQEVEHKSQRSIEELEYKVKKLSEEKEKFLDRENKLFQQLNEKNMANKQMSIVMEEYEKTISALIGEQQREKIMSNETIEKLTVERDQALEHLTSMESSFNDLLTKYEKCKSLILEFKDREKVHENKMNEYEDAVKKYEELYSNLKKVTSESLSKANETLESITKNHNAEVTKLNAIIKKHEITIASLQESLAQKNRDNEELTRICDQLINEVREIDLLWCFNSPTVLEKFVTTCDSDHGEGYSSCNLEMSPAGRALFHGYLDTRVPKDGRIKKAGYCAMRSKMQRKSFKRASTFDWHLYNTLVLKVRGDGRAYLLNISTEGYYDITWNDIYHYILYTRGGPYWQVAKIPFSKFVLGSKGRLQDKQTRMRFDKVTHFGISCGDKIVGKFNLEIEYVGLEFDPTHDEEFAYEMYKTDKYIVAV

Summary

Uniprot
A0A2H1W7F0   A0A212FJD1   A0A0L7L3B5  
Pubmed
22118469    26227816   
EMBL
ODYU01006819    SOQ49019.1    AGBW02008295    OWR53819.1    JTDY01003190    KOB69993.1    + More
Proteomes
UP000007151    UP000037510   
Pfam
PF08547   CIA30        + More
PF05010   TACC_C
Interpro
IPR007707   TACC_C        + More
IPR013857   NADH-UbQ_OxRdtase-assoc_prot30       
IPR008979   Galactose-bd-like_sf       
IPR039131   NDUFAF1       
IPR039915   TACC       
SUPFAM
SSF49785   SSF49785       
ProteinModelPortal
A0A2H1W7F0   A0A212FJD1   A0A0L7L3B5  
PDB
5LXO     E-value=0.000409205,     Score=106

Ontologies

KEGG
101736253    K18159 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 1 | (RefSeq) probable comp
GO
GO:0032981   GO:0007052  
PANTHER
PTHR13194   PTHR13924  

Topology

Length:
690
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00578
Exp number, first 60 AAs:
0.00063
Total prob of N-in:
0.00021
outside
1  -  690
 
 

Population Genetic Test Statistics

Pi
147.809753
Theta
197.662502
Tajima's D
-0.500799
CLR
1.003004
CSRT
0.23708814559272
Interpretation
Uncertain
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