Gene

KWMTBOMO15270

Pre Gene Modal

BGIBMGA005033

Annotation

PREDICTED:_hemicentin-1-like_[Amyelois_transitella]

Location

Bomo_Chr25(+):8115390-8119040      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.487 Nuclear   Reliability : 1.324

CDS

ATGAGCTCCTGGCTCCGGATCCGCTGCGTCGCTGGCTACGACGGAGGATTACCTCAGTTTTTCATTCTCGAAGCACTAGACCCCATCACGGGCAAGACCAGATTGAATAGCAGCGTTAATGAAACCGATGGCCTCGCTATGTTCAAGTTGGATCTGTCCCAACTCACTTCGACGGGCGAGGGAGATAGCGCAACATTCAATTTGTTGATATACGCTAAGAATTTAAAAGGGGACTCAGAAAAAACTCTCCTGGAAAATATTGCGTTCAACGATGCGGCTAGAAGGACAGACGGCAAAACAACAATGGGAGGGGTGACCCTTGGTGTTTTAGTAGCCGCAGCACTTGGAGCTACATTAGCTTTGGCCGGCTTGGCTTTTGGAGCGCTTTGTGCTAGAAGACGAAGATCCCAACCTCCCCACAAACATCCGCCAAGAGATATGCTGGAACTCAGCGATGGTGGAAGAAGATATGTTGTTGCCTACACTATCAAGCCATCCCCGGATTCAAAAACTCCAGATCCACAACCAGATATTCTTAATGCGCCAGATGCTGACGGCCAAGTACCAAAACTAGACGATGCTGATGAGTGGCCTAGTATAAAGGAAGTTCGAGGAGAATGGACCAAATCCGGTGCAGTTTTCTCGGCGGAAGATTTAGCGTTGTTAGATTCAGCCGTGCGACCACAACAGCTAACTCCAGGTAACGAAGTCGCACCTAATAGCAGACAAGACGATGTTTTAAACCAGAATTTACCCCAACCAATAGACTATGAAAAGAAAGAAAAAAGTCACTTTTCGGTCAAAAATTTTAACTTATTGTAG

Protein

MSSWLRIRCVAGYDGGLPQFFILEALDPITGKTRLNSSVNETDGLAMFKLDLSQLTSTGEGDSATFNLLIYAKNLKGDSEKTLLENIAFNDAARRTDGKTTMGGVTLGVLVAAALGATLALAGLAFGALCARRRRSQPPHKHPPRDMLELSDGGRRYVVAYTIKPSPDSKTPDPQPDILNAPDADGQVPKLDDADEWPSIKEVRGEWTKSGAVFSAEDLALLDSAVRPQQLTPGNEVAPNSRQDDVLNQNLPQPIDYEKKEKSHFSVKNFNLL

Uniprot

H9J692   A0A2H1V5M2   A0A3S2NNB8   A0A2W1BQV1   A0A212F0W3   A0A194RL28   + More
A0A194PI26   A0A2A4JJX4   A0A3S2P2C6   A0A139WEN6   A0A2H1V4B0   H9J689   A0A1W4WMR9   A0A1W4WLT4   A0A1W4WBP5   A0A1W4WMZ2   E0V963   A0A0K8UFJ6   W8C4F2   A0A1A9ZG62   A0A1A9YMN6   A0A1B0FCU5   A0A1W4V3R2   B3LWB5   A0A232F405   A0A3L8D739   A0A026WJB3   V9IIN9   A0A151XBQ1   A0A195EGH0   E2AKZ8   A0A195F0N4   F4WG39   A0A0M4ENU1   A0A2A3ES63   A0A087ZZQ1   A0A158NT21   A0A2W1BE05   A0A195BHH6   B4JYH7   A0A0Q9VZT0   B4PVJ8   A0A1I8NHG5   A0A154PH73   A0A0M8ZVF6   A0A0Q9WZK8   A0A0L7R1L0   A0A2A4JZZ9   Q0KIB1   Q0KIB0   B5DVI2   A0A3B0JXK8   A0A3B0K5J4   A0A3B0K2R1   A0A195C8J0   B4NHF7   A0A0C9RJZ2  

Pubmed

19121390    28756777    22118469    26354079    18362917    19820115    + More
20566863    24495485    17994087    18057021    28648823    30249741    24508170    20798317    21719571    21347285    17550304    25315136    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    15632085   

EMBL

BABH01019889    ODYU01000572    SOQ35564.1    RSAL01000001    RVE55338.1    KZ149994    + More
PZC75507.1    AGBW02011032    OWR47344.1    KQ460045    KPJ18124.1    KQ459604    KPI92379.1    NWSH01001229    PCG72028.1    RVE55340.1    KQ971354    KYB26382.1    ODYU01000599    SOQ35673.1    BABH01019909    BABH01019910    BABH01019911    DS234988    EEB09919.1    GDHF01026872    JAI25442.1    GAMC01005549    JAC01007.1    CCAG010023687    CH902617    EDV43748.2    KPU80440.1    NNAY01001084    OXU25200.1    QOIP01000012    RLU15688.1    KK107185    EZA55761.1    JR047193    AEY60351.1    KQ982320    KYQ57806.1    KQ978957    KYN26989.1    GL440425    EFN65915.1    KQ981897    KYN33674.1    GL888128    EGI66806.1    CP012526    ALC46414.1    KZ288194    PBC33881.1    ADTU01025477    ADTU01025478    ADTU01025479    ADTU01025480    KZ150231    PZC71994.1    KQ976488    KYM83604.1    CH916377    EDV90739.1    CH940656    KRF78339.1    CM000160    EDW97807.2    KQ434905    KZC11236.1    KQ435863    KOX70423.1    CH933806    KRG01141.1    KQ414667    KOC64681.1    NWSH01000305    PCG77591.1    AE014297    ABI31143.1    ABI31142.1    CM000070    EDY68097.2    OUUW01000005    SPP80240.1    SPP80241.1    SPP80239.1    KQ978205    KYM96491.1    CH964272    EDW84633.2    GBYB01013606    GBYB01013607    JAG83373.1    JAG83374.1   

Proteomes

UP000005204    UP000283053    UP000007151    UP000053240    UP000053268    UP000218220    + More
UP000007266    UP000192223    UP000009046    UP000092445    UP000092443    UP000092444    UP000192221    UP000007801    UP000215335    UP000279307    UP000053097    UP000075809    UP000078492    UP000000311    UP000078541    UP000007755    UP000092553    UP000242457    UP000005203    UP000005205    UP000078540    UP000001070    UP000008792    UP000002282    UP000095301    UP000076502    UP000053105    UP000009192    UP000053825    UP000000803    UP000001819    UP000268350    UP000078542    UP000007798   

PRIDE

H9J692    H9J689    Q0KIB1    Q0KIB0   

Pfam

PF00047   ig        + More
PF07686   V-set
PF08205   C2-set_2
PF16012   DUF4780

Interpro

IPR036179   Ig-like_dom_sf        + More
IPR013151   Immunoglobulin       
IPR007110   Ig-like_dom       
IPR013783   Ig-like_fold       
IPR003598   Ig_sub2       
IPR003599   Ig_sub       
IPR013106   Ig_V-set       
IPR013162   CD80_C2-set       
IPR031961   DUF4780       

SUPFAM

SSF48726   SSF48726       

Gene 3D

2.60.40.10    

ProteinModelPortal

H9J692   A0A2H1V5M2   A0A3S2NNB8   A0A2W1BQV1   A0A212F0W3   A0A194RL28   + More
A0A194PI26   A0A2A4JJX4   A0A3S2P2C6   A0A139WEN6   A0A2H1V4B0   H9J689   A0A1W4WMR9   A0A1W4WLT4   A0A1W4WBP5   A0A1W4WMZ2   E0V963   A0A0K8UFJ6   W8C4F2   A0A1A9ZG62   A0A1A9YMN6   A0A1B0FCU5   A0A1W4V3R2   B3LWB5   A0A232F405   A0A3L8D739   A0A026WJB3   V9IIN9   A0A151XBQ1   A0A195EGH0   E2AKZ8   A0A195F0N4   F4WG39   A0A0M4ENU1   A0A2A3ES63   A0A087ZZQ1   A0A158NT21   A0A2W1BE05   A0A195BHH6   B4JYH7   A0A0Q9VZT0   B4PVJ8   A0A1I8NHG5   A0A154PH73   A0A0M8ZVF6   A0A0Q9WZK8   A0A0L7R1L0   A0A2A4JZZ9   Q0KIB1   Q0KIB0   B5DVI2   A0A3B0JXK8   A0A3B0K5J4   A0A3B0K2R1   A0A195C8J0   B4NHF7   A0A0C9RJZ2  

KEGG

101737236    no KO assigned | (RefSeq) neural cell adhesion molecule 1-like

GO

GO:0016021  

Length:

273

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

23.0611

Exp number, first 60 AAs:

0.11873

Total prob of N-in:

0.80589

inside

1  -  103

TMhelix

104  -  126

outside

127  -  273

 

 

Pi

337.783831

Theta

216.331248

Tajima's D

1.900879

CLR

0.24445

CSRT

0.867756612169391

Interpretation

Uncertain