Gene

KWMTBOMO15268

Pre Gene Modal

BGIBMGA005032

Annotation

PREDICTED:_hemicentin-1-like_[Amyelois_transitella]

Location

Bomo_Chr25(+):8057550-8102828      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.208

CDS

ATGCACCGGACGTCTTATCCTTTAGGCCACGACGACTTCAAGCGCAGAGAAACCACTCTCTACCATCGAGGACGTTTTCAAACCTCATTCAAAAGAAGATATTGCATAGCATTCATTGAAGGGCTCATTCCAGAGATTGATAGTGCGTGGCACAAAAATAATCTGGAAAGACATTGTGATGAACAAAGCAGCTCTGGCTTCGACGTCCGCGGGCGCTCGTTCAACAAAGCCCTGCAATGGTCCGACCCTAACGCTTTCGGTCCCCGGGCGTATTTCGCGACAGTCGCCCGTCCGGCTGCCCTCACCCTCGACACGGTTCAGCTAGACGACGAGGGAGTCTACCGATGCCGGGTCGACTTCAAGAACTCGCCAACAAGAAACTTTCAGATACGGCTATCCGTTATAGTGCCACCGCATCAACTCATTCTGTACGATAAATCAGGACGAGACGTGTCCGGAGTCGTAGGACCTTTAGAAGAGGGCAACGAACTCGTTCTTATCTGCGAAGTGAGAGGAGGTCGTCCAGCACCTACCGTCATTTGGCTGATTGATGGCACACCTGCGCCTCAGTATATTGGTGAGAAGACCGATACGCACGTGGTCGTCAATCGATTAGAACTGCCACACGTCAGAAGAAGTCACTTGAACACAACCTTCAAATGCCGGGCGTCAAATACGAATCTAGTCAGTCCACAAGAGAAGACCGTCAGATTGGAAATGAATCTGAAACCGAACATGATAGAGATCCTGAACAAACCAGTCACCTTATCGTCGGAGCGACACGTCACGCTAACGTGCGTATCGGAAGGCAGCCGACCCTCAGCCCAGCTCACTTGGTTCAAAGATAACAGAAAATTTAAAAGGGGAAAGGTAACCGAAGGAACGAACGAGACGTGGGTCAGCAGTCAGTTGATGTTCACCCCATTACCTGACGATGACAATGTCCAGCTTAAGTGCCAAGCGGACAACAACGCCTTACCCGGCCAGAGCATAGAAGATTCATTCAAACTGAATGTTGTATATCCTCCCGTCGTGTCGTTGTCATTGGGCAGCACCTTAAATCCACATGAGATAAAAGAAGGTGACGACGTCTACTTCGAATGCTCAGTGAAAGCTAATCCACGGGAACATCGGATATCATGGTATCATAACGACAAGCAAGTTCTTCATAACGTGGTATCGGGAGTAATCGTGAGCACCAAGTCTCTGGTTCTACAGAAAGTGACAAGAGATCTGGGAGGAGACTACTCTTGCAGGGCCACTAATGCTCTCGGTGAAACGGCCAGCCAGACAACACATCTCAGTATACAATATGCACCAGTTTGTTCGCATCCAACACCTCAAGTATTAGGAGCACAAATAGAAGAAGCATTGAGAGTGAGATGCTCTGTCACAGCCAACCCTCCGGACGTGACGTTCTTCTGGCAATTTAACAACAGCGGCGAGAGTCTAGACGTATCTCCGCTAAAATTTGGTACAGCGAATGGCAGTACGAGCGAATTGGTGTACAAACCTCAGAGCGAGCGTGACTTTGGAACGCTTAGCTGTAGAGGCGCCAACACTGTCGGGAGACAACTGGAGCCATGTGACTTCCAAATTGTGCCAGCTGATCTTAACAACATAATCTAA

Protein

MHRTSYPLGHDDFKRRETTLYHRGRFQTSFKRRYCIAFIEGLIPEIDSAWHKNNLERHCDEQSSSGFDVRGRSFNKALQWSDPNAFGPRAYFATVARPAALTLDTVQLDDEGVYRCRVDFKNSPTRNFQIRLSVIVPPHQLILYDKSGRDVSGVVGPLEEGNELVLICEVRGGRPAPTVIWLIDGTPAPQYIGEKTDTHVVVNRLELPHVRRSHLNTTFKCRASNTNLVSPQEKTVRLEMNLKPNMIEILNKPVTLSSERHVTLTCVSEGSRPSAQLTWFKDNRKFKRGKVTEGTNETWVSSQLMFTPLPDDDNVQLKCQADNNALPGQSIEDSFKLNVVYPPVVSLSLGSTLNPHEIKEGDDVYFECSVKANPREHRISWYHNDKQVLHNVVSGVIVSTKSLVLQKVTRDLGGDYSCRATNALGETASQTTHLSIQYAPVCSHPTPQVLGAQIEEALRVRCSVTANPPDVTFFWQFNNSGESLDVSPLKFGTANGSTSELVYKPQSERDFGTLSCRGANTVGRQLEPCDFQIVPADLNNII

Uniprot

A0A194RL28   A0A2W1BQV1   A0A2H1V4B0   A0A212FKA1   A0A3S2P2C6   A0A194RLD1   + More
A0A194PGE6   A0A212F6U3   A0A3S2L969   A0A1W4WBP5   A0A1W4WMZ2   A0A2A4JZZ9   A0A2W1BE05   A0A0N1IMU1   T1HZW4   E2AKZ8   A0A3L8D739   A0A195C8J0   E2BN54   F4WG39   A0A195BHH6   A0A026WJB3   A0A195EGH0   A0A195F0N4   A0A151XBQ1   A0A154PH73   A0A158NT21   A0A2A3ES63   A0A087ZZQ1   A0A0L7LLH3   W8AHD9   A0A0L7R1L0   W8APF5   Q0KIB1   B4KAZ5   A0A232F405   A0A0L0BYB4   A0A1I8QAQ7   K7IQE1   A0A0Q9WZK8   A0A0Q9VZT0   B4NHF7   A0A0M4ENU1   A0A0C9RJZ2   B4JYH7   B3LWB5   A0A1I8NHG5   B4PVJ8   A0A2C9GQ20   A0A1W4V3R2   A0A3B0K2R1   A0A3B0JXK8   B5DVI2   Q0KIB0   A0A0M8ZVF6   A0A336MIU2   A0A1W4WMR9   A0A1W4WLT4   A0A1B6G259   A0A067RCL4   U4TXN3   A0A0K8T359   A0A0A9ZBH5   A0A336MBR2   A0A0P9ANK1   A0A336M9R3   A0A2J7PYK2   A0A1B6LB71   A0A212FI98   A0A2A4JDY9   A0A1B6C6V9   A0A067QVT8   H9J5G2   A0A194PPB3   A0A2H1WJ89   A0A2J7PYN3   A0A194RK28   A0A1W4WRT9   A0A1W4WQT7   A0A1W4WFY8   D6WPK9   A0A1Y1NKS5   B3LX91   A0A1I8PBW5   C0PTV4   A0A182N5E5   A0A0Q9W1D8   B4NKE4   B4M6A4   A0A0M5JCQ5   A0A1W4UR97  

Pubmed

26354079    28756777    22118469    20798317    30249741    21719571    + More
24508170    21347285    26227816    24495485    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    17994087    28648823    26108605    20075255    18057021    25315136    17550304    15632085    24845553    23537049    25401762    26823975    19121390    18362917    19820115    28004739   

EMBL

KQ460045    KPJ18124.1    KZ149994    PZC75507.1    ODYU01000599    SOQ35673.1    + More
AGBW02008103    OWR54162.1    RSAL01000001    RVE55340.1    KPJ18125.1    KQ459604    KPI92377.1    AGBW02009972    OWR49444.1    RSAL01000082    RVE48510.1    NWSH01000305    PCG77591.1    KZ150231    PZC71994.1    KQ459356    KPJ01278.1    ACPB03001712    GL440425    EFN65915.1    QOIP01000012    RLU15688.1    KQ978205    KYM96491.1    GL449385    EFN82816.1    GL888128    EGI66806.1    KQ976488    KYM83604.1    KK107185    EZA55761.1    KQ978957    KYN26989.1    KQ981897    KYN33674.1    KQ982320    KYQ57806.1    KQ434905    KZC11236.1    ADTU01025477    ADTU01025478    ADTU01025479    ADTU01025480    KZ288194    PBC33881.1    JTDY01000670    KOB76275.1    GAMC01018645    JAB87910.1    KQ414667    KOC64681.1    GAMC01018648    JAB87907.1    AE014297    ABI31143.1    CH933806    EDW14673.2    NNAY01001084    OXU25200.1    JRES01001160    KNC24961.1    KRG01141.1    CH940656    KRF78339.1    CH964272    EDW84633.2    CP012526    ALC46414.1    GBYB01013606    GBYB01013607    JAG83373.1    JAG83374.1    CH916377    EDV90739.1    CH902617    EDV43748.2    KPU80440.1    CM000160    EDW97807.2    APCN01002160    APCN01002161    OUUW01000005    SPP80239.1    SPP80240.1    CM000070    EDY68097.2    ABI31142.1    KQ435863    KOX70423.1    UFQS01001282    UFQT01001282    SSX10113.1    SSX29835.1    GECZ01013250    JAS56519.1    KK852551    KDR21492.1    KB631716    ERL85567.1    GBRD01006221    JAG59600.1    GBHO01002348    GDHC01008300    JAG41256.1    JAQ10329.1    UFQT01000721    SSX26761.1    KPU79298.1    SSX26760.1    NEVH01020344    PNF21423.1    GEBQ01019020    JAT20957.1    AGBW02008416    OWR53449.1    NWSH01001734    PCG70297.1    GEDC01028050    JAS09248.1    KK853189    KDR10051.1    BABH01028139    KQ459596    KPI95281.1    ODYU01008707    SOQ52514.1    PNF21422.1    KQ460118    KPJ17690.1    KQ971354    EFA06826.2    GEZM01002471    JAV97235.1    EDV41691.1    KPU79296.1    KPU79297.1    KPU79299.1    BT071799    ACN43735.2    CH940652    KRF78738.1    EDW84074.1    EDW59180.1    KRF78739.1    KRF78740.1    ALC47181.1   

Proteomes

UP000053240    UP000007151    UP000283053    UP000053268    UP000192223    UP000218220    + More
UP000015103    UP000000311    UP000279307    UP000078542    UP000008237    UP000007755    UP000078540    UP000053097    UP000078492    UP000078541    UP000075809    UP000076502    UP000005205    UP000242457    UP000005203    UP000037510    UP000053825    UP000000803    UP000009192    UP000215335    UP000037069    UP000095300    UP000002358    UP000008792    UP000007798    UP000092553    UP000001070    UP000007801    UP000095301    UP000002282    UP000075840    UP000192221    UP000268350    UP000001819    UP000053105    UP000027135    UP000030742    UP000235965    UP000005204    UP000007266    UP000075884   

PRIDE

Q0KIB1    Q0KIB0    H9J5G2    C0PTV4   

Pfam

PF07686   V-set        + More
PF00047   ig
PF08205   C2-set_2
PF07679   I-set
PF16012   DUF4780
PF00041   fn3

Interpro

IPR013162   CD80_C2-set        + More
IPR013151   Immunoglobulin       
IPR007110   Ig-like_dom       
IPR036179   Ig-like_dom_sf       
IPR003598   Ig_sub2       
IPR013783   Ig-like_fold       
IPR003599   Ig_sub       
IPR013106   Ig_V-set       
IPR013098   Ig_I-set       
IPR031961   DUF4780       
IPR036116   FN3_sf       
IPR003961   FN3_dom       

SUPFAM

SSF48726   SSF48726        + More
SSF49265   SSF49265       

Gene 3D

2.60.40.10    

CDD

cd00063  FN3

ProteinModelPortal

A0A194RL28   A0A2W1BQV1   A0A2H1V4B0   A0A212FKA1   A0A3S2P2C6   A0A194RLD1   + More
A0A194PGE6   A0A212F6U3   A0A3S2L969   A0A1W4WBP5   A0A1W4WMZ2   A0A2A4JZZ9   A0A2W1BE05   A0A0N1IMU1   T1HZW4   E2AKZ8   A0A3L8D739   A0A195C8J0   E2BN54   F4WG39   A0A195BHH6   A0A026WJB3   A0A195EGH0   A0A195F0N4   A0A151XBQ1   A0A154PH73   A0A158NT21   A0A2A3ES63   A0A087ZZQ1   A0A0L7LLH3   W8AHD9   A0A0L7R1L0   W8APF5   Q0KIB1   B4KAZ5   A0A232F405   A0A0L0BYB4   A0A1I8QAQ7   K7IQE1   A0A0Q9WZK8   A0A0Q9VZT0   B4NHF7   A0A0M4ENU1   A0A0C9RJZ2   B4JYH7   B3LWB5   A0A1I8NHG5   B4PVJ8   A0A2C9GQ20   A0A1W4V3R2   A0A3B0K2R1   A0A3B0JXK8   B5DVI2   Q0KIB0   A0A0M8ZVF6   A0A336MIU2   A0A1W4WMR9   A0A1W4WLT4   A0A1B6G259   A0A067RCL4   U4TXN3   A0A0K8T359   A0A0A9ZBH5   A0A336MBR2   A0A0P9ANK1   A0A336M9R3   A0A2J7PYK2   A0A1B6LB71   A0A212FI98   A0A2A4JDY9   A0A1B6C6V9   A0A067QVT8   H9J5G2   A0A194PPB3   A0A2H1WJ89   A0A2J7PYN3   A0A194RK28   A0A1W4WRT9   A0A1W4WQT7   A0A1W4WFY8   D6WPK9   A0A1Y1NKS5   B3LX91   A0A1I8PBW5   C0PTV4   A0A182N5E5   A0A0Q9W1D8   B4NKE4   B4M6A4   A0A0M5JCQ5   A0A1W4UR97  

PDB

4OFY     E-value=3.86825e-15,     Score=200

KEGG

101737236    no KO assigned | (RefSeq) neural cell adhesion molecule 1-like

GO

GO:0016021   GO:0005515   GO:0008270   GO:0050660   GO:0050661   GO:0005524   GO:0016020   GO:0003677   GO:0008408   GO:0005112   GO:0015930  

Length:

542

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0031

Exp number, first 60 AAs:

0.00163

Total prob of N-in:

0.00122

outside

1  -  542

 

 

Pi

225.722846

Theta

180.499125

Tajima's D

0.931338

CLR

0.543372

CSRT

0.641517924103795

Interpretation

Uncertain