Gene

KWMTBOMO15266

Pre Gene Modal

BGIBMGA005031

Annotation

PREDICTED:_hemicentin-1-like_[Amyelois_transitella]

Location

Bomo_Chr25(+):8032090-8041005      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.238 Extracellular   Reliability : 1.147

CDS

ATGTGGTCGGTAAAGTGGATCAGGCTATTAGTGATGCTGGCAGCGTGCTGGGCTCAAGAAGGCGAGTGGAGTGAAGATGCTGAAGACTTGGTGTCGACAGTCGACGTTGACGCGGTGTTGGGGCGCACTGCCTCCCTGCCCTGTGACGTCACACCAGACGCTATTGAAGATCGCGTCTACATGGTGCTCTGGTTCAGAGCGGGAAAAGCCACGGGTGGAAAACCTATATACAGGTTAGTTCATCATATTCAATAA

Protein

MWSVKWIRLLVMLAACWAQEGEWSEDAEDLVSTVDVDAVLGRTASLPCDVTPDAIEDRVYMVLWFRAGKATGGKPIYRLVHHIQ

Uniprot

A0A2W1BQV1   A0A212FM08   A0A2A4JGU2   A0A194PI26   A0A194RL28   A0A3S2MAT9   + More
A0A1J1HJP2   A0A1J1HJR1   A0A194RHW0   A0A0M8ZVF6   A0A0N1I325   A0A232F405   A0A182FAV5   A0A1B0BWQ7   W8BDQ3   A0A0Q9W1D8   B4M6A4   B4JI81   A0A0C9RJZ2   A0A034W9N8   W8B9C8   A0A0A1WVT0   A0A1I8PBW5   C0PTV4   B4HFS3   Q9VFU7   B3P448   B4PQF3   B4R186   A0A0K8U830   A0A0K8WMB4  

Pubmed

28756777    22118469    26354079    28648823    24495485    17994087    + More
18057021    25348373    25830018    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304   

EMBL

KZ149994    PZC75507.1    AGBW02007666    OWR54783.1    NWSH01001639    PCG70612.1    + More
KQ459604    KPI92379.1    KQ460045    KPJ18124.1    RSAL01000001    RVE55339.1    CVRI01000006    CRK88280.1    CRK88279.1    KQ460367    KPJ15531.1    KQ435863    KOX70423.1    KQ459356    KPJ01277.1    NNAY01001084    OXU25200.1    JXJN01021927    GAMC01018641    JAB87914.1    CH940652    KRF78738.1    EDW59180.1    KRF78739.1    KRF78740.1    CH916369    EDV92962.1    GBYB01013606    GBYB01013607    JAG83373.1    JAG83374.1    GAKP01006691    JAC52261.1    GAMC01011313    JAB95242.1    GBXI01011571    JAD02721.1    BT071799    ACN43735.2    CH480815    EDW42308.1    AE014297    AAF54952.3    AFH06404.1    CH954181    EDV49222.1    CM000160    EDW97249.1    KRK03606.1    CM000364    EDX13063.1    GDHF01029500    JAI22814.1    GDHF01028633    GDHF01000289    JAI23681.1    JAI52025.1   

Proteomes

UP000007151    UP000218220    UP000053268    UP000053240    UP000283053    UP000183832    + More
UP000053105    UP000215335    UP000069272    UP000092460    UP000008792    UP000001070    UP000095300    UP000001292    UP000000803    UP000008711    UP000002282    UP000000304   

PRIDE

C0PTV4    Q9VFU7   

Pfam

PF07686   V-set        + More
PF08205   C2-set_2
PF00047   ig

Interpro

IPR013106   Ig_V-set        + More
IPR036179   Ig-like_dom_sf       
IPR003598   Ig_sub2       
IPR013162   CD80_C2-set       
IPR013783   Ig-like_fold       
IPR003599   Ig_sub       
IPR007110   Ig-like_dom       
IPR013151   Immunoglobulin       
IPR036116   FN3_sf       
IPR003961   FN3_dom       

SUPFAM

SSF48726   SSF48726        + More
SSF49265   SSF49265       

Gene 3D

2.60.40.10    

CDD

cd00063  FN3

ProteinModelPortal

A0A2W1BQV1   A0A212FM08   A0A2A4JGU2   A0A194PI26   A0A194RL28   A0A3S2MAT9   + More
A0A1J1HJP2   A0A1J1HJR1   A0A194RHW0   A0A0M8ZVF6   A0A0N1I325   A0A232F405   A0A182FAV5   A0A1B0BWQ7   W8BDQ3   A0A0Q9W1D8   B4M6A4   B4JI81   A0A0C9RJZ2   A0A034W9N8   W8B9C8   A0A0A1WVT0   A0A1I8PBW5   C0PTV4   B4HFS3   Q9VFU7   B3P448   B4PQF3   B4R186   A0A0K8U830   A0A0K8WMB4  

KEGG

101737236    no KO assigned | (RefSeq) neural cell adhesion molecule 1-like

GO

GO:0016021   GO:0005515   GO:0046872   GO:0050660   GO:0050661   GO:0005524   GO:0016020   GO:0003677   GO:0008408   GO:0005112   GO:0015930  

SignalP

Position:   1 - 18,         Likelihood:  0.994563

 

 

Length:

84

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00635

Exp number, first 60 AAs:

0.00284

Total prob of N-in:

0.26040

outside

1  -  84

 

 

Pi

29.063624

Theta

47.382913

Tajima's D

-1.336395

CLR

2000.662625

CSRT

0.0838458077096145

Interpretation

Uncertain