Gene

KWMTBOMO15265

Pre Gene Modal

BGIBMGA005029

Annotation

PREDICTED:_nephrin-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr25(+):7827940-7863194      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.279 PlasmaMembrane   Reliability : 1.339

CDS

ATGAATTACGACATAGTATTACGATTGTCTACGGTCGATGTGGATGCAGTCCTAGGGCGCACTGCGTCCTTGCCCTGTGACGTCACGCCCGACGCCAACGAAGACCGCGTGTACATGGTGCTCTGGTTCAGGAAAAGTGGAGGGAAACCTATATACAGCTTTGACGTACGGGGGCGTTCATTCAACAAAGCTCTACAATGGTCGGACCCTGGCGCTTTCGGACCACGAGCTTACTTCGCAACTGTCGCTCGACCGGCGGCCCTGACCTTGACCTCCGTGCAACTTGACGACGAAGGCGTATACCGATGCAGAGTAGACTTCAAGAATTCACCCACAAGAAATTTTCAAATACGGCTGACTGTTATCGTGCCTCCTCATCAAATGTTATTATATGACAAGTCAGGAGCTGATGTGTCTGGAGTCGTAGGACCTTTGGAAGAAGGTGCAGCATTAGTTCTGATCTGCGAAGTACGCGGAGGTCGTCCAGAGCCGCTTGTTTCTTGGTGGATAAACGGCGTACCGGCTCCTCAATACATTGGTATCAAAACCGATACCCACGTGGTGGTGAACAGGCTCGAACACCAAAATTTGAAACGAGATGATCTGAACACGACCTTCAAATGTAGAGCTACAAATACTAATTTGGTTCCACCCCAAGAGAAAGTTGTAAGGCTGGAGTTGAATCTGTCTCCGCTTTCCGTTTCTTTGCTGAACCGACCGCAGCAGTTGTTAGCCGGCTCAGCTGCGACCATACGATGCGTATCCGAAGGCAGCCGACCTCCAGCACAGATCTCATGGTTTAAAGACAACAGGAGTTTTTCAAAAAACATGATATCGGATCACTCAAATGAAACGTGGTCACTCAGTGCGTTAGTGTTCACTCCAGCGCCTACGGATCACGGAACTACAATCAAATGCGTCGCAGCGAACCCTAGCCTACCTACTAAGACTATTAACGATCAGCTACTGCTTAATGTTGTATATAGTCCCCTGGTGATCCTGACTTTGGGCAGCACTCTCAACCCAGACGACATCAAAGAAGGGGACGACGTTTACTTCGAGTGCAATGTCCGAGCGAATCCTCGGGAGCATCGAATATCATGGTACCACAATGACAGGCCGGTGATGCAGAATATGTCTTCGGGTATCATCGTGAGTACGCGGTCTCTGGTTCTGCAGAAGGTTACGAGAGGAGAAGCCGGCGCCTATACTTGCAAAGCGGCTAATTCTCGAGGCGAAACTTCTAGTCAAGCTGTGAAATTGAGAGTGCAATATGCTCCGGTTTGCTCTGAACCATCTCCTCAAGTAGTAGGGGCCGCAATAGATGAGGCTTTACAAGTTCGATGCGCGGTCCACGCGGACCCTTCAGACGTAACTTTCTTATGGCAATTCAACAATAGCGGAGAGAGTTTCGACGTTTCTCCAGCTAGATATGGTACAATCAACAGCAGTGTAAGTGAGCTTCGGTACAGGCCATCAAGTGAAAGGGATTATGGAGCTCTAACATGCAGTGGTATTAACACAGTAGGTCGGCAAACACAGCCCTGCGTTTTCCAAATTGTTCCAGCTGCTCGCCCCTCACCTCCAAAGAATTGCACAGTAACGTCTAGTAACAATTCGACTTGGCTGGAAGACTCCAAAGAAGAAACGGAAGATTTTCTGATTGTGCGATGTGTGACCGGCTATGACGGCGGTCTTCCACAACTGGTTGTACTGGAAGCAGTTGATTCTGACAGTGGAACTGTTAGATTCAATGTAACTGCCAATGAAACAGATGGAGTTGCCTTCTTCTCGGTGCCTTCAGGAGTTTTGTGGTCGAGTAGAAATGCTTTAAGACTCACCGTACATTCTAGGAACGATAAAGGATCCTCTGAACGTATTTTGCTTCAAGCACTCACTTACCAAGGACCGGAAAGGAGAACAGATGGAGTCAATAACTTAGTAGCCGGAGTATCTAAAACTGCGTTTTGGGCCATAATTGTTACATCTGTGATCACCGCCAGCGCACTGATACTCATCGTGTATTTTTTGAGAAGAAAGAGGGAGAGACCGACAATGAAACAATCATCAGAGCTTCAAATCAACGCTGGATCCGGTCAGTATGTGGTAGCGTACACACTAAAACCTTCTAAACAAGCTCAACCTGATATCTTAAATCCACCTTCTGATGGGGGCACTCAAATTGCTAAGGGCGTTGCAGGGACTGTCAAAAATGGCACTCTACCCATGAGTGACGAGTGGTCCGCCGGCGAAAGAGCCCAGTACGCGTCGTCGCCGAAAACGTCACTCTCAAGTAAGCCAGCTGCCTCTGGGACCACCACGCTCAGTAGGAGAGAGCATCTCATAGCTGAAGAGATCCCAGGACCGGAGAGTTGCGTATAA

Protein

MNYDIVLRLSTVDVDAVLGRTASLPCDVTPDANEDRVYMVLWFRKSGGKPIYSFDVRGRSFNKALQWSDPGAFGPRAYFATVARPAALTLTSVQLDDEGVYRCRVDFKNSPTRNFQIRLTVIVPPHQMLLYDKSGADVSGVVGPLEEGAALVLICEVRGGRPEPLVSWWINGVPAPQYIGIKTDTHVVVNRLEHQNLKRDDLNTTFKCRATNTNLVPPQEKVVRLELNLSPLSVSLLNRPQQLLAGSAATIRCVSEGSRPPAQISWFKDNRSFSKNMISDHSNETWSLSALVFTPAPTDHGTTIKCVAANPSLPTKTINDQLLLNVVYSPLVILTLGSTLNPDDIKEGDDVYFECNVRANPREHRISWYHNDRPVMQNMSSGIIVSTRSLVLQKVTRGEAGAYTCKAANSRGETSSQAVKLRVQYAPVCSEPSPQVVGAAIDEALQVRCAVHADPSDVTFLWQFNNSGESFDVSPARYGTINSSVSELRYRPSSERDYGALTCSGINTVGRQTQPCVFQIVPAARPSPPKNCTVTSSNNSTWLEDSKEETEDFLIVRCVTGYDGGLPQLVVLEAVDSDSGTVRFNVTANETDGVAFFSVPSGVLWSSRNALRLTVHSRNDKGSSERILLQALTYQGPERRTDGVNNLVAGVSKTAFWAIIVTSVITASALILIVYFLRRKRERPTMKQSSELQINAGSGQYVVAYTLKPSKQAQPDILNPPSDGGTQIAKGVAGTVKNGTLPMSDEWSAGERAQYASSPKTSLSSKPAASGTTTLSRREHLIAEEIPGPESCV

Uniprot

A0A3S2P2C6   A0A2H1V4B0   A0A194RLD1   A0A212FKA1   A0A194PGE6   A0A2A4JIS9   + More
A0A194RL28   A0A2W1BQV1   A0A0L7LLH3   A0A212F6U3   A0A3S2L969   A0A1W4WMZ2   A0A1W4WBP5   A0A154PH73   T1HZW4   A0A3L8D739   E2BN54   A0A2A3ES63   A0A087ZZQ1   A0A195BHH6   A0A026WJB3   A0A195EGH0   F4WG39   A0A195C8J0   A0A195F0N4   E2AKZ8   A0A151XBQ1   A0A158NT21   A0A232F405   K7IQE1   Q0KIB1   A0A2A4JZZ9   A0A2W1BE05   A0A0L7R1L0   A0A0C9RJZ2   A0A0M8ZVF6   A0A1W4WLT4   A0A1W4WMR9   D6WPK9   A0A1B6G259   A0A0K8T359   A0A0A9ZBH5   A0A1B6LB71   A0A336M9R3   A0A067RCL4   A0A0L0BY62   A0A1I8PBW5   A0A1Y1NKS5   A0A1B6C6V9   A0A0Q9W1D8   B4JI81   B4M6A4   A0A139WE49   A0A0M5JCQ5   B4KAA3   B3LX91   A0A1I8NIL5   A0A2H1WJ89   A0A1W4WRT9   A0A1W4WQT7   A0A1W4WFY8   A0A1W4UR97   A0A1W4V3H8   A0A2J7PYN3   A0A034W9N8   C0PTV4   A0A1W4V371   A0A182IS29   B4NKE4   W8B9C8   A0A0R3NN42   A0A3B0KV58   B4G2W0   Q297Q6  

Pubmed

26354079    22118469    28756777    26227816    30249741    20798317    + More
24508170    21719571    21347285    28648823    20075255    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    18362917    19820115    25401762    26823975    24845553    26108605    28004739    17994087    18057021    25315136    25348373    24495485    15632085    23185243   

EMBL

RSAL01000001    RVE55340.1    ODYU01000599    SOQ35673.1    KQ460045    KPJ18125.1    + More
AGBW02008103    OWR54162.1    KQ459604    KPI92377.1    NWSH01001251    PCG71977.1    KPJ18124.1    KZ149994    PZC75507.1    JTDY01000670    KOB76275.1    AGBW02009972    OWR49444.1    RSAL01000082    RVE48510.1    KQ434905    KZC11236.1    ACPB03001712    QOIP01000012    RLU15688.1    GL449385    EFN82816.1    KZ288194    PBC33881.1    KQ976488    KYM83604.1    KK107185    EZA55761.1    KQ978957    KYN26989.1    GL888128    EGI66806.1    KQ978205    KYM96491.1    KQ981897    KYN33674.1    GL440425    EFN65915.1    KQ982320    KYQ57806.1    ADTU01025477    ADTU01025478    ADTU01025479    ADTU01025480    NNAY01001084    OXU25200.1    AE014297    ABI31143.1    NWSH01000305    PCG77591.1    KZ150231    PZC71994.1    KQ414667    KOC64681.1    GBYB01013606    GBYB01013607    JAG83373.1    JAG83374.1    KQ435863    KOX70423.1    KQ971354    EFA06826.2    GECZ01013250    JAS56519.1    GBRD01006221    JAG59600.1    GBHO01002348    GDHC01008300    JAG41256.1    JAQ10329.1    GEBQ01019020    JAT20957.1    UFQT01000721    SSX26760.1    KK852551    KDR21492.1    JRES01001160    KNC24967.1    GEZM01002471    JAV97235.1    GEDC01028050    JAS09248.1    CH940652    KRF78738.1    CH916369    EDV92962.1    EDW59180.1    KRF78739.1    KRF78740.1    KYB26230.1    CP012526    ALC47181.1    CH933806    EDW14590.1    KRG01093.1    KRG01094.1    CH902617    EDV41691.1    KPU79296.1    KPU79297.1    KPU79299.1    ODYU01008707    SOQ52514.1    NEVH01020344    PNF21422.1    GAKP01006691    JAC52261.1    BT071799    ACN43735.2    CH964272    EDW84074.1    GAMC01011313    JAB95242.1    CM000070    KRT00496.1    OUUW01000013    SPP87858.1    CH479179    EDW24155.1    EAL28149.2    KRT00494.1    KRT00495.1    KRT00497.1   

Proteomes

UP000283053    UP000053240    UP000007151    UP000053268    UP000218220    UP000037510    + More
UP000192223    UP000076502    UP000015103    UP000279307    UP000008237    UP000242457    UP000005203    UP000078540    UP000053097    UP000078492    UP000007755    UP000078542    UP000078541    UP000000311    UP000075809    UP000005205    UP000215335    UP000002358    UP000000803    UP000053825    UP000053105    UP000007266    UP000027135    UP000037069    UP000095300    UP000008792    UP000001070    UP000092553    UP000009192    UP000007801    UP000095301    UP000192221    UP000235965    UP000075880    UP000007798    UP000001819    UP000268350    UP000008744   

PRIDE

Q0KIB1    C0PTV4   

Pfam

PF07686   V-set        + More
PF08205   C2-set_2
PF00047   ig
PF07679   I-set

Interpro

IPR013106   Ig_V-set        + More
IPR003598   Ig_sub2       
IPR036179   Ig-like_dom_sf       
IPR007110   Ig-like_dom       
IPR003599   Ig_sub       
IPR013162   CD80_C2-set       
IPR013783   Ig-like_fold       
IPR013151   Immunoglobulin       
IPR003961   FN3_dom       
IPR036116   FN3_sf       
IPR013098   Ig_I-set       

SUPFAM

SSF48726   SSF48726        + More
SSF49265   SSF49265       

Gene 3D

2.60.40.10    

CDD

cd00063  FN3

ProteinModelPortal

A0A3S2P2C6   A0A2H1V4B0   A0A194RLD1   A0A212FKA1   A0A194PGE6   A0A2A4JIS9   + More
A0A194RL28   A0A2W1BQV1   A0A0L7LLH3   A0A212F6U3   A0A3S2L969   A0A1W4WMZ2   A0A1W4WBP5   A0A154PH73   T1HZW4   A0A3L8D739   E2BN54   A0A2A3ES63   A0A087ZZQ1   A0A195BHH6   A0A026WJB3   A0A195EGH0   F4WG39   A0A195C8J0   A0A195F0N4   E2AKZ8   A0A151XBQ1   A0A158NT21   A0A232F405   K7IQE1   Q0KIB1   A0A2A4JZZ9   A0A2W1BE05   A0A0L7R1L0   A0A0C9RJZ2   A0A0M8ZVF6   A0A1W4WLT4   A0A1W4WMR9   D6WPK9   A0A1B6G259   A0A0K8T359   A0A0A9ZBH5   A0A1B6LB71   A0A336M9R3   A0A067RCL4   A0A0L0BY62   A0A1I8PBW5   A0A1Y1NKS5   A0A1B6C6V9   A0A0Q9W1D8   B4JI81   B4M6A4   A0A139WE49   A0A0M5JCQ5   B4KAA3   B3LX91   A0A1I8NIL5   A0A2H1WJ89   A0A1W4WRT9   A0A1W4WQT7   A0A1W4WFY8   A0A1W4UR97   A0A1W4V3H8   A0A2J7PYN3   A0A034W9N8   C0PTV4   A0A1W4V371   A0A182IS29   B4NKE4   W8B9C8   A0A0R3NN42   A0A3B0KV58   B4G2W0   Q297Q6  

PDB

5ZO2     E-value=8.20237e-14,     Score=190

KEGG

101743616    no KO assigned | (RefSeq) nephrin-like

GO

GO:0016021   GO:0005515   GO:0046872   GO:0050660   GO:0050661   GO:0005524   GO:0016020   GO:0003677   GO:0008408   GO:0005112   GO:0015930  

Length:

793

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.89428

Exp number, first 60 AAs:

0.0002

Total prob of N-in:

0.00060

outside

1  -  654

TMhelix

655  -  677

inside

678  -  793

 

 

Pi

246.134084

Theta

172.33702

Tajima's D

1.427316

CLR

0.525052

CSRT

0.777511124443778

Interpretation

Uncertain