Silkworm Genome Informatics Database

Gene

KWMTBOMO15254

Annotation

Transposon_Ty3-I_Gag-Pol_polyprotein_[Operophtera_brumata]

Location

Bomo_Chr25(+):7494696-7500222 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 2.376

CDS

ATGGATTTACCTATCTTACAAGAGCTTCTGAAGGCCATCAAAGACGCAGTTTCCGGTTCCCGCCAGAACGACAGCGAGGTCGCCCTGCCCGTATTTGATCCTGCTAAAAGTGACCTTGGTGCTGAATCATGGTGCAACAATATTGAAACCCTCTCCAAAGAGTTTGGATGGAGTAACATCGCAACAGTCGCCAAAGCTGGTAAGGCCCTTAAGGGATCCGCCTTATTGTGGTTTGAAACATGGGACCCGCCTGAGGGTCGTTCGTGGGACAATTTACGTTTAGAGCTGGTAGCTTTATACCCTGAGAAAAAGAATCTAGCAGAAAAACTTCATAAGGCAGTGCTATACACGTCGGAAACTGCAGATTCTTATTGCGAGTACGCAAGGGAAAAAATTAGTATAATGGAACTCTCAGGTGCGATAAACAGTCTAGATCATCAGCTGCAGGATAGGATAAGGGCTATTTTTCAAAAATACCCCTCTGTTTTGGACAATATTGGTCATGTAAAGACTGGTGAACTTGAAATAAAATTAAAAAGAGATGAGGTTGAGCGTTATGTGGCTACTGTAGTCAATATGTTAAACACTATGTGCGAGGAGCCGTCAGAGTGGCCGAACGTATTGCCAAAAGTACAGCAGTCAATTAACACGACAGTACAAAAATCGACTGGTTTCACCCCCTTACGTTTACTAACCGGTATAGAAGCAAATATACCTATAGTACAATCTCATCTAAACGGAATTATTAATGATGAGGATTTACACCCCAATATTGACGTCCAAGCTGATCGTGAAATAGCCAAACAGAGACTACAAAAAATAGCAGAAACATTTAAACAACGATTTGATCATGTTAGGCGGAATAATAAACAATACAATATAGGTGATTTGGTCTATGTCAGCCAAGATCATAGGCGTAATGATAAATTAAGATCTAGATTTAAGGGCCCTTACGAAATTCAGTCTATCCTTCCAAATGATCGCTATACTCTGAAAGGCAACGGTAATGTTAGGAATATAGTTGTCGCTAAGGAAAAATTACGGTTTTGGCCAGGAGAATGGGTTGATGATAATTTGTGA

Protein

MDLPILQELLKAIKDAVSGSRQNDSEVALPVFDPAKSDLGAESWCNNIETLSKEFGWSNIATVAKAGKALKGSALLWFETWDPPEGRSWDNLRLELVALYPEKKNLAEKLHKAVLYTSETADSYCEYAREKISIMELSGAINSLDHQLQDRIRAIFQKYPSVLDNIGHVKTGELEIKLKRDEVERYVATVVNMLNTMCEEPSEWPNVLPKVQQSINTTVQKSTGFTPLRLLTGIEANIPIVQSHLNGIINDEDLHPNIDVQADREIAKQRLQKIAETFKQRFDHVRRNNKQYNIGDLVYVSQDHRRNDKLRSRFKGPYEIQSILPNDRYTLKGNGNVRNIVVAKEKLRFWPGEWVDDNL

Uniprot

A0A3S2PH68

EMBL

RSAL01000035 RVE51343.1

Proteomes

UP000283053

Pfam

PF17921 Integrase_H2C2 + More
PF00665 rve

Interpro

IPR041588   Integrase_H2C2        + More
IPR036397   RNaseH_sf
IPR012337   RNaseH-like_sf
IPR001584   Integrase_cat-core

SUPFAM

SSF53098 SSF53098

Gene 3D

3.30.420.10

ProteinModelPortal

A0A3S2PH68

PDB

3DLR E-value=0.00179707, Score=97

KEGG

NA

GO

GO:0003676 GO:0046872 GO:0050660 GO:0050661 GO:0005524 GO:0016020 GO:0003677 GO:0008408 GO:0005112 GO:0015930

Length:

359

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00095

outside

1 - 359

Pi

26.197161

Theta

189.043507

Tajima's D

0.149329

CLR

327.741013

CSRT

0.413829308534573

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree