Gene

KWMTBOMO15244  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005168

Annotation

PREDICTED:_helicase_SKI2W_[Bombyx_mori]

Location

Bomo_Chr25(-):7291684-7309363      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.007 Nuclear   Reliability : 1.764

CDS

ATGTCGCAAGATACCAAAGACGAATTCTCCGATGTTTCAATTCCTCCTATATTAGAAGATGTGAATAGTTGGGTGCAAGATTATTTGCTACAGCCAGAAAAATTAAAAATACATAAATGGGAACGTTCTCAAACGCATTGGCATAGAAAACCCAATATAGATTCCTTATTTTTGCTAGATGATGATGATGAGAACGAACCGGACACAACCCTTGAGGTAGTTAGAGATCCTTTAACAGGTGAGATTATAGGAGTGGAAGAAATCTGCATACCAACAGAGGATGACGAGGAAAACTTATCAATGGCTCGAGCACCACTGCCTCCAAGCCTTGCCACCCGTGGTACTACAACACAGAGTCCATTTTTACCAGCTGGTTTTGAAGAAGATCTTCAAAAGATGATAGAAGAGCAGCAAAAACAGATAGAGATCAACCTTAATACAGAGAATGATGTACCTGGAAAATTTTTGGGTGAAGATATATTAACTGTAGCACCAGGCTGTAAGGACAGTGTATTGTTTGCTGAGGATGGTTTTACATTGCTCAATGAGGGCAAACCTGAAGACAAACCTGATGACATTGAGGATGTCGACATCAATATCAAGATTAATTTGGAAGAGATAGTGGAAAACAATGTACATTTAGTAGATCTATGGAAAGATGATAGTGAACAACCTCAAAAACCTAAAACACCAAGTCATATTGAAGTAGCAACAGATGAAATAGAAAACGAAAATTTCCTGGAAGAAACTGTCGTCAAACCACCAGTAGAACTGCCAGAAATACCAGTATTGGACATAACCAGTTCTGTGGGAAAATTAGGAGTGACTTCCACAGAATGGGCCGAGATGATTGATGTTTCGAAGCCTGTACCAGAATTTAGAGACAAGATTAAAGACATGGCTCATTCATATCCTTTTGAATTGGATAATTTCCAGAAACAGGCGATATTAAAATTAGAAGAAGGTCATCATGTATTTGTCGCTGCACACACATCTGCTGGTAAAACGGTGGTCGCAGAATATGCAATTGCGATGTCAAGAAGAAATTACACAAGGGCCATCTACACGTCTCCAATTAAAGCTTTATCGAACCAGAAGTACAACGATTTCAACAAGTTGTTTGGCGATGTCGGCTTGCTGACCGGAGACCTGCAGATCAACGCCACCGCATCCTGTCTCGTGATGACGACCGAGATCCTCCGCTCGATGTTGTACTGCGGCTCCGATGTTGTCAGAGATCTGGAGTTTGTAATATTCGACGAAGTTCACTATATCAATAACGTCGAGCGCGGCTACGTGTGGGAAGAGGTGTTGATCCTCCTGCCGTCGCACGTGAGGATAGTGATGCTGAGCGCGACCGTACCGAACACGCTGCAGTTCGCGGACTGGGTCGGACGAACGAAAAAACGGAAGGTGTTCGTCGTATCGACTCCCAAACGACCGGTACCGCTGTGCCATTATTTGTACACAGGCAGCGGTGGTAAATCAAAGAATGAGAGATTCAAAGTGGTAGATCAAGAAGGGAACTTCCTGCTCCGTGGATACAATGAGGCCCTCGCTGCTAAGAAGTCCAGGGAGAACGATTACAAGAAAAACTTTGGCCCGAAAGGTGGGAAACAATACATGAACCCCAAAGCTGAACAGACGATGTGGGTCGCCTTCATTGATCACTTGAAGCAAAACGACAAACTTCCAATTGTGGCTTTCACTTTATCTCGCAACAGGTGTGACCAGAACGCGGAAAATTTGATGTCCGTCGATTTGACGACGGCGAAAGAGAAAAGTCACATTAAATCATTCTTTCAGAGGTGCTTGCAGCGATTGAAGGAGCCTGACCGTAAATTGCCGCAAGTCTTAAGACTACAAAGAGTTTTAGAAAATGGTATCGGCGTGCATCACAGCGGTATATTGCCGTTGCTGAAGGAAATCGTTGAAATGTTATTTCAGACCGGTTTCGTTAAAATATTGTTCGCGACTGAAACGTTCGCGATGGGCGTGAACATGCCGGCGAGGACGGTAGTCTTCGACGAGATCACCAAGTTTGACGGCGTCGAGCGCAGGACCCTCGCTCCGGCTGAATACATACAAATGGCGGGAAGGGCTGGACGGAGAGGTCTGGACGACACCGGCACAGTGATAATACTTTGCAAAGAAAGTGTTCCGGATCTGGTGACGCTAAAAGGGATGTTATTGGGAACACCGCAGAAGCTCTCCTCCCAGTTCAGACTGACATATGCCATGATCCTAAGCTTATTACGAGCGGCCACGGTTTCCGTCGAGGGCATGATGCAGCGCTCGTTTTGCGAGTTCAACCAGATCTGTCAGGCGGACAACTACCGCAGGCAGCTCGAGGTCGCCGAGAAGGAGTACTCCGAGAAGTGCAGCGCCCCCCTCGCGTCGCACCTCGCCCCCCTCGCCGCCTTCTACGAGACCGCGGCCGCCTACCTCGACGTGCTCAACGAGATAATGCCCATACTGCTGAACCAATCGAAGGTGGCAAAGGAATTGGACGCAGGGAAGATACTGATCGTCTCCGCCGGGCCGTATATCAATCAGCTGGCCGTGTATTTGAATAGCACTGGTCCACGACAAACTCCGTATAAGGTTTTAGTACTGAACACGCCGATCCAAGACTCGTCGCGTTATAACTTCGAAATCGACGAAAATTGGTACAGGATGCTCAGTTTCTCTGCTACATACGATGCCATAGGTACAGAGGAAAGCACGATGGATCATAAAGTATTGTGTATCGCGCCAAGGAACATAGTTGCGGTAACGAAAATGAACCTAAAAATCGACGTCACTCGCATTATACAAGACTGGGAACAGCGGCAGATACCGCGGTTCAAGGACGCTCCGGTGGGGGCGAGCTGCGCCAGCACGGTGCAGGAGCTGTCCCGCATGTCGCACGCCGCCCGCGCCGGCGCCGTCCAGCTCGAGCGCATCAACCTCACGCACTCCCTCGCCATCTCCACCGGCGAGATACTGCAGGCACTAGACAAGCTTAAAGCACTAGCTACTGAACTCGAGGCCCACAAGAAATTTACCGATATAGCGAACTTCAAGTCGGAATTCGCTGTGGTATACGAACGCAAACAAGCTGAGAGGAAGCGAGATAAATATAAACGTCTACTGTCGTTCGAGAACTTGTCTCTCTACCCCGACTACCAACGGAGACTGCTAGTCCTCAGGGAGCTGAGCTACATCGACGAACACGATAGCGTTATACTGAAAGGTCGCGTGGCGTGCGGAATGGGAACAAACGAACTGATCATATCGGAGCTGATATTCCGGAACGTGTTCGCCGACAAGACCCCGGCAGAAATTGCCGCGCTGCTCAGCTGCTTCGTGTTCCAAGCCAGGACCCAGGTCACGAACCCGCTCACAGAGAAACTGACTGAAGGCGTCAAAGCCATTGAGGAGATCGACGCCGAAATCGCTTCTATAGAGGCTAAATATTTAGTAAGTCACTTCGAAGGGCAAGCAGAGAGGTTGAACTTTGGCCTTGTAAGGGTAGTGTATGAATGGGCTTTGGAGAAACCTTTCGCAGAGATTATGGACCTAACGGATGTTCAAGAAGGAATCATTGTGAGATGTATACAGCAGTTGCATGAGTTACTGGTAGACGTGAAAGACGCATCCGTGGCGATCGGTGATCCGAAACTTCAGTCGAAAATGATGGAAGCGTCTACATCTATAAAGAGAGATATCGTGTTCGCTGCCAGTTTGTACACAACCCAGAAAGAAGCATTGAATACGTAA

Protein

MSQDTKDEFSDVSIPPILEDVNSWVQDYLLQPEKLKIHKWERSQTHWHRKPNIDSLFLLDDDDENEPDTTLEVVRDPLTGEIIGVEEICIPTEDDEENLSMARAPLPPSLATRGTTTQSPFLPAGFEEDLQKMIEEQQKQIEINLNTENDVPGKFLGEDILTVAPGCKDSVLFAEDGFTLLNEGKPEDKPDDIEDVDINIKINLEEIVENNVHLVDLWKDDSEQPQKPKTPSHIEVATDEIENENFLEETVVKPPVELPEIPVLDITSSVGKLGVTSTEWAEMIDVSKPVPEFRDKIKDMAHSYPFELDNFQKQAILKLEEGHHVFVAAHTSAGKTVVAEYAIAMSRRNYTRAIYTSPIKALSNQKYNDFNKLFGDVGLLTGDLQINATASCLVMTTEILRSMLYCGSDVVRDLEFVIFDEVHYINNVERGYVWEEVLILLPSHVRIVMLSATVPNTLQFADWVGRTKKRKVFVVSTPKRPVPLCHYLYTGSGGKSKNERFKVVDQEGNFLLRGYNEALAAKKSRENDYKKNFGPKGGKQYMNPKAEQTMWVAFIDHLKQNDKLPIVAFTLSRNRCDQNAENLMSVDLTTAKEKSHIKSFFQRCLQRLKEPDRKLPQVLRLQRVLENGIGVHHSGILPLLKEIVEMLFQTGFVKILFATETFAMGVNMPARTVVFDEITKFDGVERRTLAPAEYIQMAGRAGRRGLDDTGTVIILCKESVPDLVTLKGMLLGTPQKLSSQFRLTYAMILSLLRAATVSVEGMMQRSFCEFNQICQADNYRRQLEVAEKEYSEKCSAPLASHLAPLAAFYETAAAYLDVLNEIMPILLNQSKVAKELDAGKILIVSAGPYINQLAVYLNSTGPRQTPYKVLVLNTPIQDSSRYNFEIDENWYRMLSFSATYDAIGTEESTMDHKVLCIAPRNIVAVTKMNLKIDVTRIIQDWEQRQIPRFKDAPVGASCASTVQELSRMSHAARAGAVQLERINLTHSLAISTGEILQALDKLKALATELEAHKKFTDIANFKSEFAVVYERKQAERKRDKYKRLLSFENLSLYPDYQRRLLVLRELSYIDEHDSVILKGRVACGMGTNELIISELIFRNVFADKTPAEIAALLSCFVFQARTQVTNPLTEKLTEGVKAIEEIDAEIASIEAKYLVSHFEGQAERLNFGLVRVVYEWALEKPFAEIMDLTDVQEGIIVRCIQQLHELLVDVKDASVAIGDPKLQSKMMEASTSIKRDIVFAASLYTTQKEALNT

Uniprot

H9J6M6   A0A2W1BLI2   A0A2H1VXA4   A0A212F1T4   A0A194PG46   A0A2A4JND5   + More
A0A1J1HQZ8   A0A139WFJ1   A0A0T6BA79   U5EIU8   A0A067RCX2   A0A182GDG8   A0A1I8PA25   A0A0P6J5A2   A0A182LYH4   A0A182R374   A0A336MWM2   A0A336MRM6   A0A1Q3FB24   A0A0A1XNY6   B4PNY0   A0A1I8N3B6   A0A336L5U7   W8B7G6   A0A182XE56   B4G507   A0A1Y1KGN9   T1PAU2   A0A182VDZ3   A0A2Y9D0Z7   B0W8I5   Q299C3   A0A182XWV2   A0A182LCC7   A0A182VXF4   Q7QBG5   A0A182U1Q7   A0A182NFT5   A0A0M4ESP4   A0A0L0BUS7   A0A182PAG3   B4KDB1   A0A1W4U8V7   B4M0F1   A0A182QLV6   A0A3B0KAD4   A0A340U1B2   A0A084WE53   B3P8D9   A0A1B0AHG4   A0A1A9VM29   A0A1B0AKG7   Q9VCH8   A0A182JXH9   B3LY47   B4JTA0   Q9BI21   A0A2M4CM27   A0A182FQA6   B4R250   W5JVF2   A0A0N8E5P7   A0A182IKE9   A0A195FDU0   B4HFY8   B4NIE9   A0A1A9Y7G8   A0A164RFB2   A0A0P5JGK2   A0A151I5F7   A0A158NMY9   A0A0P6AX76   A0A0P5HD62   A0A0P6G596   A0A2J7R4U4   A0A0P5KES4   A0A0P5RSW0   E9GL10   Q16I20   A0A087ZTB0   A0A0P6HRT9   N6TT23   A0A026W551   A0A2A3ECB5   E2BSM0   A0A0P5FYU2   A0A154P5D3   A0A0P5UQ77   E0VSJ6   A0A0P5YGV1   A0A0P5B799   A0A2P2I500   U4U2T1   A0A0M9A6U8   A0A195E1W8   A0A1B6JIN4   A0A151X1J3   A0A0P4WA02   A0A0J7P518  

Pubmed

19121390    28756777    22118469    26354079    18362917    19820115    + More
24845553    26483478    26999592    25830018    17994087    17550304    25315136    24495485    28004739    15632085    25244985    20966253    12364791    14747013    17210077    26108605    24438588    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    20920257    23761445    21347285    21292972    17510324    23537049    24508170    30249741    20798317    20566863   

EMBL

BABH01019969    BABH01019970    KZ150046    PZC74504.1    ODYU01004999    SOQ45438.1    + More
AGBW02010802    OWR47699.1    KQ459604    KPI92361.1    NWSH01000977    PCG73296.1    CVRI01000019    CRK90453.1    KQ971352    KYB26733.1    LJIG01002943    KRT83997.1    GANO01002487    JAB57384.1    KK852718    KDR17792.1    JXUM01009933    KQ560295    KXJ83195.1    GDUN01000628    JAN95291.1    AXCM01002727    UFQT01002288    SSX33113.1    SSX33112.1    GFDL01010347    JAV24698.1    GBXI01015474    GBXI01001635    JAC98817.1    JAD12657.1    CM000160    EDW98190.1    UFQS01001708    UFQT01001708    SSX11915.1    SSX31477.1    GAMC01013582    GAMC01013580    JAB92973.1    CH479179    EDW24673.1    GEZM01084797    JAV60672.1    KA645270    AFP59899.1    APCN01002128    DS231859    EDS39035.1    CM000070    EAL27780.1    AAAB01008879    EAA08476.4    CP012526    ALC47797.1    JRES01001300    KNC23786.1    CH933806    EDW14893.1    CH940650    EDW68330.1    AXCN02000244    OUUW01000007    SPP83049.1    CCAG010012076    ATLV01023152    KE525341    KFB48497.1    CH954182    EDV53963.1    JXJN01025262    AE014297    AY061315    AAF56187.2    AAL28863.1    AGB96264.1    CH902617    EDV43951.1    CH916373    EDV94990.1    AJ276896    CAC35050.1    GGFL01002209    MBW66387.1    CM000364    EDX14107.1    ADMH02000324    ETN66955.1    GDIQ01059292    JAN35445.1    AXCP01007734    KQ981656    KYN38573.1    CH480815    EDW43381.1    CH964272    EDW83731.1    LRGB01002190    KZS08607.1    GDIQ01200248    GDIQ01154652    GDIQ01066238    JAK51477.1    KQ976431    KYM87628.1    ADTU01020650    GDIP01025302    JAM78413.1    GDIQ01231621    JAK20104.1    GDIQ01038160    JAN56577.1    NEVH01007402    PNF35854.1    GDIQ01186442    JAK65283.1    GDIQ01097780    JAL53946.1    GL732550    EFX79874.1    CH478117    EAT33904.1    GDIQ01014301    JAN80436.1    APGK01055453    KB741266    ENN71496.1    KK107405    QOIP01000014    EZA51202.1    RLU14865.1    KZ288292    PBC29124.1    GL450241    EFN81266.1    GDIQ01269968    JAJ81756.1    KQ434809    KZC06330.1    GDIP01111769    JAL91945.1    DS235751    EEB16352.1    GDIP01071780    JAM31935.1    GDIP01192915    JAJ30487.1    IACF01003342    LAB68960.1    KB631940    ERL87337.1    KQ435736    KOX77059.1    KQ979776    KYN19133.1    GECU01008717    JAS98989.1    KQ982588    KYQ54143.1    GDRN01087771    JAI60988.1    LBMM01000091    KMR05009.1   

Proteomes

UP000005204    UP000007151    UP000053268    UP000218220    UP000183832    UP000007266    + More
UP000027135    UP000069940    UP000249989    UP000095300    UP000075883    UP000075900    UP000002282    UP000095301    UP000076407    UP000008744    UP000075903    UP000075840    UP000002320    UP000001819    UP000076408    UP000075882    UP000075920    UP000007062    UP000075902    UP000075884    UP000092553    UP000037069    UP000075885    UP000009192    UP000192221    UP000008792    UP000075886    UP000268350    UP000092444    UP000030765    UP000008711    UP000092445    UP000078200    UP000092460    UP000000803    UP000075881    UP000007801    UP000001070    UP000069272    UP000000304    UP000000673    UP000075880    UP000078541    UP000001292    UP000007798    UP000092443    UP000076858    UP000078540    UP000005205    UP000235965    UP000000305    UP000008820    UP000005203    UP000019118    UP000053097    UP000279307    UP000242457    UP000008237    UP000076502    UP000009046    UP000030742    UP000053105    UP000078492    UP000075809    UP000036403   

PRIDE

H9J6M6    Q9VCH8    Q9BI21   

Pfam

PF00271   Helicase_C        + More
PF17911   Ski2_N
PF08148   DSHCT
PF00270   DEAD
PF13234   rRNA_proc-arch
PF00106   adh_short

Interpro

IPR011545   DEAD/DEAH_box_helicase_dom        + More
IPR012961   Ski2_C       
IPR014001   Helicase_ATP-bd       
IPR001650   Helicase_C       
IPR040801   Ski2_N       
IPR025696   rRNA_proc-arch_dom       
IPR027417   P-loop_NTPase       
IPR016438   Ski2-like       
IPR001841   Znf_RING       
IPR013083   Znf_RING/FYVE/PHD       
IPR020904   Sc_DH/Rdtase_CS       
IPR002347   SDR_fam       
IPR036291   NAD(P)-bd_dom_sf       

SUPFAM

SSF52540   SSF52540        + More
SSF51735   SSF51735       

Gene 3D

3.30.40.10    

CDD

cd00079  HELICc

ProteinModelPortal

H9J6M6   A0A2W1BLI2   A0A2H1VXA4   A0A212F1T4   A0A194PG46   A0A2A4JND5   + More
A0A1J1HQZ8   A0A139WFJ1   A0A0T6BA79   U5EIU8   A0A067RCX2   A0A182GDG8   A0A1I8PA25   A0A0P6J5A2   A0A182LYH4   A0A182R374   A0A336MWM2   A0A336MRM6   A0A1Q3FB24   A0A0A1XNY6   B4PNY0   A0A1I8N3B6   A0A336L5U7   W8B7G6   A0A182XE56   B4G507   A0A1Y1KGN9   T1PAU2   A0A182VDZ3   A0A2Y9D0Z7   B0W8I5   Q299C3   A0A182XWV2   A0A182LCC7   A0A182VXF4   Q7QBG5   A0A182U1Q7   A0A182NFT5   A0A0M4ESP4   A0A0L0BUS7   A0A182PAG3   B4KDB1   A0A1W4U8V7   B4M0F1   A0A182QLV6   A0A3B0KAD4   A0A340U1B2   A0A084WE53   B3P8D9   A0A1B0AHG4   A0A1A9VM29   A0A1B0AKG7   Q9VCH8   A0A182JXH9   B3LY47   B4JTA0   Q9BI21   A0A2M4CM27   A0A182FQA6   B4R250   W5JVF2   A0A0N8E5P7   A0A182IKE9   A0A195FDU0   B4HFY8   B4NIE9   A0A1A9Y7G8   A0A164RFB2   A0A0P5JGK2   A0A151I5F7   A0A158NMY9   A0A0P6AX76   A0A0P5HD62   A0A0P6G596   A0A2J7R4U4   A0A0P5KES4   A0A0P5RSW0   E9GL10   Q16I20   A0A087ZTB0   A0A0P6HRT9   N6TT23   A0A026W551   A0A2A3ECB5   E2BSM0   A0A0P5FYU2   A0A154P5D3   A0A0P5UQ77   E0VSJ6   A0A0P5YGV1   A0A0P5B799   A0A2P2I500   U4U2T1   A0A0M9A6U8   A0A195E1W8   A0A1B6JIN4   A0A151X1J3   A0A0P4WA02   A0A0J7P518  

PDB

5MC6     E-value=0,     Score=1667

KEGG

101745059    K12599 antiviral helicase SKI2 [EC:3.6.4.-] | (RefSeq) helicase SKI2W

PATHWAY

03018    RNA degradation - Bombyx mori (domestic silkworm)

GO

GO:0003723   GO:0005524   GO:0006401   GO:0003724   GO:0055087   GO:0004004   GO:0070478   GO:0003676   GO:0016491   GO:0016021   GO:0005634   GO:0016887   GO:0000381   GO:0004386   GO:0016020   GO:0003677   GO:0008408   GO:0005112   GO:0015930  

Length:

1253

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01944

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00010

outside

1  -  1253

 

 

Pi

250.9705

Theta

193.036263

Tajima's D

0.993795

CLR

0.330797

CSRT

0.653317334133293

Interpretation

Uncertain