Silkworm Genome Informatics Database

Gene

KWMTBOMO15220

Annotation

endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]

Location

Bomo_Chr25(-):7005309-7007583 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 2.689

CDS

ATGAGGAAATTTAACGCCGCCTCTAGGTCCTATAAGAGGGTTATTGCCAAGGCGAAGTCGGAGCACGTTGCCAGAATTGGCGAGCGACTGAATAGCTATCCCTCTGGGAGCCGTGCTTTCTGGTCGCTAGCTAAGGCTGCAGAAGGTAACTTCTGCAGGTCTAGCCTTCCACCACTGCGTAAGTCCAATGACAGTCTGGCTCATAGTGCGAAGGAGAAGGCTGACCTTCTGGTCAAGCTCTTTGCCTCATACTCGACTTTGGATGACGAAGGAGCCACACCGCCCAACATCTCCCGGTGTGACAGCTCCATGCCTGAGATTCGCATCACACAGCGTGCAGTCAGGCAGGAGCTTCGGCTTCTTGATGTCCATAAGTCGAGTGGGCCAGATTGCATCCCCGCAGTGGTTCTAAAAACATGCGCCCCTGAATTGACACCCGCGCTAACGCGTCTATATCGCCTCTCGTACAATACGAACAGGGTTCCGTCTTCATGGAAGACTGCTCATGTCCACCCTATCCCCAAGAAGGGTGACCGGTCGGACCCCTCGAATTACAGACCTATCGCGATAACTTCCTTGCTTTCCAAGGTGATGGAGCGAATCATAAACATCCAACTTCTTAAGTATCTTGAGGATCGCCAGCTGATCAGTGACCGGCAGTACGGTTTCCATCATGGTCGCTCAGCTGGCGATCTTCTTGTATACCTCACACATAAATGGGCTGAAGCCTTGGAAAGCAAGGGCGAGGCTCTCGCTGTGAGCCTTGACATCGCGAAGGCCTTCGACAGGGTCTGGCATAGGGCACTTCTATCGAAGCTTCCAGCATACGGGATCCCTGAGGGACTCTGCAAGTGGATCGCTAGCTTTTTGGATGGACGGAGCATCACAGTTGTCGTCGACGGCTGCTGCTCCGATACCATGACCATCAACGCTGGTGTTCCACAAGGTTCGGTGCTCTCCCCCACGCTTTTCATACTGCATATCAATGACATGCTATCTATTGATGGCATACATTGCTATGCGGATGACAGCACGGGGGATGCGCGATATATCGGCCATCAGAGTCTCTCTCGAAGCGTTGTACACGAGAGGCGATTAAAACTTGTGTCTGAAGTGGAGAACTCTCTGGGGCGGGTCTCCAAGTGGGGTGAACTGAATTCAGTTCAGTTCAACCCATTGAAGACACAGGTTTGCGCGTTCACTGCGAAGAAGGACCCTTTTGTCATGGCGCCGGAATTTCAAGGAGTATCCCTGCAGCTTTCCGCGAGTATCGGGATTCTGGGGGTCGATATTTCGAGCGATGTCCAGTTTCGGAGTCATTTGGAAGGTAAAGCCAAATTGGCCTCTAAAATGTTGGGAGTTCTCAACAGAGCGAAGCGGTATTTCACGCCTGGACAGAGACTTGCGCTTTATAAAGCGCAGGTCCGACCTCGCGTGGAGTACTGCTCTCACCTCTGGGCCGGGGCTCCCAAATACCAGCTACTTCCATTTGACTCCATACAGAAACGGGCTGTTCGGATGGTCGATAGTCCTGCTCTCGCGGATCGCTTGGAACCTCTGGGTCTACGGAGGGACTTCGGTTCTCTCTGTGTTTTATACCGCATGGTCCATGGGGAATGCTCTGAGGAATTATTCGAGATGATTCCTTCATCTCCTTTTTATCATCGCACCTCCCGCCATCGGAGCAGAGTTCATCCATATTATCTGGAACCGCTGCGTTCATCGACAGTGCGTTTCCAAAGATCTTTTTTGCCACGTACCATCCGGCTTTGGAATGAACTCCCCTCCACGGTGTTTTCCGAGCGCTATGACATGTCCTTCTTCAAACGAGGCTTGCGGAGAGTTCTTTATGGTAGGCAGCGGCTTGGCTCTGCCCCTGGCATTGCTGACGTCCATGAGCGACGGTGA

Protein

MRKFNAASRSYKRVIAKAKSEHVARIGERLNSYPSGSRAFWSLAKAAEGNFCRSSLPPLRKSNDSLAHSAKEKADLLVKLFASYSTLDDEGATPPNISRCDSSMPEIRITQRAVRQELRLLDVHKSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVPSSWKTAHVHPIPKKGDRSDPSNYRPIAITSLLSKVMERIINIQLLKYLEDRQLISDRQYGFHHGRSAGDLLVYLTHKWAEALESKGEALAVSLDIAKAFDRVWHRALLSKLPAYGIPEGLCKWIASFLDGRSITVVVDGCCSDTMTINAGVPQGSVLSPTLFILHINDMLSIDGIHCYADDSTGDARYIGHQSLSRSVVHERRLKLVSEVENSLGRVSKWGELNSVQFNPLKTQVCAFTAKKDPFVMAPEFQGVSLQLSASIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLALYKAQVRPRVEYCSHLWAGAPKYQLLPFDSIQKRAVRMVDSPALADRLEPLGLRRDFGSLCVLYRMVHGECSEELFEMIPSSPFYHRTSRHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFSERYDMSFFKRGLRRVLYGRQRLGSAPGIADVHERR

Uniprot

Q6UV17 A0A3S2NTH0 A0A3S2LQP1 A0A3S2NMS5 A0A3D5S1K1 A0A0P4VTV9 + More
T2M4I6 A0A0P4VX79

Pubmed

30148503 24065732

EMBL

AY359886 AAQ57129.1 RSAL01000090 RVE48098.1 RSAL01000422 RVE41792.1 + More
RSAL01000002 RVE54942.1 DPOC01000269 HCX22453.1 GDRN01111334 JAI56796.1 HAAD01000593 CDG66825.1 GDRN01111326 JAI56798.1

Proteomes

UP000283053

PRIDE

Q6UV17

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF04939   RRS1
PF01585   G-patch
PF02460   Patched
PF00096   zf-C2H2

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase
IPR036691   Endo/exonu/phosph_ase_sf
IPR007023   Ribosom_reg
IPR012677   Nucleotide-bd_a/b_plait_sf
IPR000504   RRM_dom
IPR034653   SPF45_RRM
IPR003954   RRM_dom_euk
IPR000467   G_patch_dom
IPR040052   RBM17
IPR035979   RBD_domain_sf
IPR030223   Dispatched
IPR003392   Ptc/Disp
IPR000731   SSD
IPR013087   Znf_C2H2_type
IPR036236   Znf_C2H2_sf

SUPFAM

SSF56219   SSF56219        + More
SSF54928   SSF54928
SSF57667   SSF57667

Gene 3D

3.60.10.10 3.30.70.330

CDD

cd12647 RRM_UHM_SPF45

ProteinModelPortal

Q6UV17 A0A3S2NTH0 A0A3S2LQP1 A0A3S2NMS5 A0A3D5S1K1 A0A0P4VTV9 + More
T2M4I6 A0A0P4VX79

PDB

6AR3 E-value=0.000220799, Score=108

KEGG

105842661 no KO assigned | (RefSeq) uncharacterized LOC105842661

GO

GO:0003964 GO:0004519 GO:0003723 GO:0016021 GO:0003676

PANTHER

PTHR17602 PTHR13288 PTHR45951:SF3

Length:

635

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00634999999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00202

outside

1 - 635

Pi

4.212524

Theta

46.441015

Tajima's D

1.067566

CLR

0.045606

CSRT

0.686065696715164

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree