SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15219
Pre Gene Modal
BGIBMGA004955
Annotation
PREDICTED:_zinc_transporter_ZIP1-like_[Amyelois_transitella]
Location in the cell
PlasmaMembrane   Reliability : 4.902
 

Sequence

CDS
ATGGCCGTCGAAAACGTTTTAACCGCTAAAATAGTAACAATGGTATCCTTATTCGGGATATCCATGTTCGTGGGATGTTTGCCGTTGTTGATATCGAAGAAGTTCAACTGGTTCACGAAATCCCGCGATCCAAACCTGCGGTCTTCGAATCAGCTGGTGATGGGACTGTTGGCGTTTGGTGGCGGAGTACTTTTCGCTACAACGTTCATGCATCTCCTGCCTGAGGTGGACGAAAACATTGAATTGTTGCAAGAGACAGGAGAGATCCCCGATGTGCCAGTGTTCCTTGCCGGTTTGATAATGTGCGGAGGATTCTTCATGATGTACTTAGTCGAAGAATTAGTTCACTTGTACATACACGCCAGGGAGCACAAACCATCAGAGAAGAACGACGCCAAACCGTTCAGCCTAAGGAAGAGCATCTCGGGGAACGATCCAGAAATAAACCAAGAGACCAAACAAATTGAGAATGAAACCAATAGCGGTCATAGTCATTTAGTTCTCGATTCATCCCAAGAAGATTCTGTGGTGTCAGCCCTGAGAGGCTTGCTGATAGTCCTGGCGCTATCCATTCACGAACTGTTCGAAGGATTGGCAGTCGGCCTAGAGTCTTCAGTTGCCAATGTCTGGTACATGTTCGGAGCGGTGTCAGCCCACAAATACATCATTGCTTTCTGCATCGGAGTTGAACTGTTAGCGGCTGGCACGAGAAAATGGCTGTCTCTCGTCTACATCTTTACGTTTTCGTTCATGTCAGCCCTGGGTATCGGCATTGGGATCTTACTAGTAGGAGGGTCAGGGGCCGCGGCAGCTGGACTATATTCAGTGGTGTTACAGGGCATTGCCTGCGGTACTCTGGTCTACGTGGTGTTCTTTGAGGTGTGGAAGCGGAGCAGCGGTCTCCTGCAGTTCGCGTGCGCTCTCCTCGGGTTTGCGGTCATGGTTTCTCTCGAGGTTACCGTTGAATTCAGTGAGTAA
Protein
MAVENVLTAKIVTMVSLFGISMFVGCLPLLISKKFNWFTKSRDPNLRSSNQLVMGLLAFGGGVLFATTFMHLLPEVDENIELLQETGEIPDVPVFLAGLIMCGGFFMMYLVEELVHLYIHAREHKPSEKNDAKPFSLRKSISGNDPEINQETKQIENETNSGHSHLVLDSSQEDSVVSALRGLLIVLALSIHELFEGLAVGLESSVANVWYMFGAVSAHKYIIAFCIGVELLAAGTRKWLSLVYIFTFSFMSALGIGIGILLVGGSGAAAAGLYSVVLQGIACGTLVYVVFFEVWKRSSGLLQFACALLGFAVMVSLEVTVEFSE

Summary

EMBL
KZ150014    PZC75010.1    NWSH01000170    PCG78801.1    JTDY01002941    KOB70445.1    + More
KQ460045    KPJ18157.1    GDQN01003787    JAT87267.1    RSAL01000102    RVE47486.1    AGBW02013585    OWR43199.1    ODYU01004243    SOQ43910.1    PZC75012.1    KPJ18153.1    GDQN01011647    JAT79407.1    AGBW02009942    OWR49531.1    LJIG01009022    KRT83912.1    KQ414786    KOC60850.1    GL443059    EFN62666.1    GEZM01084004    GEZM01084003    JAV60859.1    AJVK01024657    KQ434896    KZC10726.1    KK107109    EZA59147.1    ADTU01016065    QOIP01000008    RLU19196.1    KQ976725    KYM76593.1    KQ982813    KYQ50277.1    GL453466    EFN75979.1    RVE47484.1    UFQT01000005    SSX17319.1    PYGN01000427    PSN46581.1    KQ765605    OAD53872.1    NNAY01000318    OXU29265.1    CH916367    EDW01999.1    KQ971321    KYB28661.1    GANO01000007    JAB59864.1    JXUM01075351    KQ562882    KXJ74939.1    KQ978957    KYN27266.1    KQ978023    KYM98098.1    APGK01057486    APGK01057487    KB741280    KB632033    ENN70945.1    ERL88183.1    GAPW01001720    JAC11878.1    CH477222    EAT47262.1    UFQT01003778    SSX35273.1    KQ981636    KYN38834.1    GL888439    EGI60869.1    GFDF01009263    JAV04821.1    CH954177    EDV59795.1    GFDF01009304    JAV04780.1    GFDF01009264    JAV04820.1    CM000361    CM002911    EDX05775.1    KMY91782.1    CVRI01000010    CRK88730.1    CM000157    EDW89079.2    GBYB01002301    JAG72068.1    AY071095    AE013599    AAL48717.1    AAM70819.2    AJ401614    CAC14873.1    KK852483    KDR22853.1    CH480816    EDW46650.1    CH902617    EDV43431.1    GFDF01009390    JAV04694.1    GFDF01009372    JAV04712.1    GFDF01009373    JAV04711.1    CH954181    EDV49123.1    DS231855    EDS38215.1    CH940648    EDW61666.1    LBMM01006206    KMQ90809.1    GFDL01009597    JAV25448.1    GFDL01009598    JAV25447.1    CM000160    EDW97338.1    ENN70946.1    CAQQ02197592    GL770938    EFZ09898.1    AY070921    AAL48543.1    AJ401615    CAC14874.1    CM000071    EAL24722.2    CH479181    EDW31400.1    AE014297    BT133201    AAF55295.1    AFA28442.1    CH902619    EDV38118.1    NWSH01005677    PCG64063.1    NEVH01012087    PNF30604.1    CH480827    EDW44889.1    CM000364    EDX12708.1    CH933806    EDW15136.1    OUUW01000008    SPP84517.1    KQ459604    KPI92343.1    CH963894    EDW77040.1    CH933808    EDW08940.2    OUUW01000001    SPP73026.1    CM000070    EAL28609.2    CH479182    EDW34419.1    BABH01019992    CP012524    ALC42177.1    PNF30595.1    ODYU01001850    SOQ38625.1   
Pfam
PF02535   Zip
Interpro
IPR003689   ZIP       

Ontologies

Topology

Length:
325
Number of predicted TMHs:
8
Exp number of AAs in TMHs:
174.36992
Exp number, first 60 AAs:
30.80358
Total prob of N-in:
0.02122
POSSIBLE N-term signal
sequence
outside
1  -  9
TMhelix
10  -  32
inside
33  -  51
TMhelix
52  -  74
outside
75  -  88
TMhelix
89  -  111
inside
112  -  176
TMhelix
177  -  199
outside
200  -  208
TMhelix
209  -  231
inside
232  -  242
TMhelix
243  -  265
outside
266  -  269
TMhelix
270  -  292
inside
293  -  298
TMhelix
299  -  321
outside
322  -  325
 
 

Population Genetic Test Statistics

Pi
254.09325
Theta
2.345011
Tajima's D
1.635024
CLR
0.273688
CSRT
0.852757362131893
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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