SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15197
Pre Gene Modal
BGIBMGA004966
Annotation
PREDICTED:_JNK1/MAPK8-associated_membrane_protein_[Amyelois_transitella]
Location in the cell
PlasmaMembrane   Reliability : 4.987
 

Sequence

CDS
ATGGCAGCTGTAAGATCGTGTCCAGGACTGTATTGTGGTCGTATTGAACTCGAAGATGGGTCGTGGAGTGACTGTGGGGCGTGTCCGCGAGGTTTCAGGACAAACGCATCAAGTTACTGCATGCCGTGCGTTGATGAACCCTCTCTATATGACTGGCAGTACCTTGGCTTTATGGTCCTCCTGCCCATGGTTTTGCATTGGTTTTTCATTGACATGGTCACCAGGGGTAAAGCCGAGAATGGCGTTATCATACAACACATGTGTGCCTTTTTGGAGGTCATATCAGGAACACTTGCCGCATTGTTAGTGCTGCCTCCGCCTGGGTCAGTCTCACTATATATGTGTTCACCAAAAGCACTTTCGGATTGGTATACACTGTTGCATAATCCACAGCCAGATTATAAAGAGATGTTGCATTGTACTCAGGAAGCAGTGTATCCTTTATATACAATAGTTTTTCTGATTTATGCATTCAGCTTATTAATGACCATAACATTAAGACCATGGTTACTGGCCTGGAATGCACCCAATTCTGGTAAAAAGGCAATATATTGTGCTTTATATTTTCATCCTATACTTGTATTGATTCATACTGTTGCTGCCGGTTTAATTTATTGCTCATTCCCCTACATAGTAATAATAATATCAATGATGACATCAGCATCGCATTTCTCAATTAAATCAGAACAGTCTGCGCCAGCACTATTGATTTCTTCTATCACTAATACACGGAATTTAATTATTCTCTTTGGACACTGGTTGGTCCATGCATATGGCATATTATCACTAACGGGGTTTAAAGAATTATGGTATTTGTCGTTAGTGCCCGCTCCGGCTATGTTTTATATTGTGACGGCACAATTCACAGATCCCTTGAAGATACATGGTGATTGA
Protein
MAAVRSCPGLYCGRIELEDGSWSDCGACPRGFRTNASSYCMPCVDEPSLYDWQYLGFMVLLPMVLHWFFIDMVTRGKAENGVIIQHMCAFLEVISGTLAALLVLPPPGSVSLYMCSPKALSDWYTLLHNPQPDYKEMLHCTQEAVYPLYTIVFLIYAFSLLMTITLRPWLLAWNAPNSGKKAIYCALYFHPILVLIHTVAAGLIYCSFPYIVIIISMMTSASHFSIKSEQSAPALLISSITNTRNLIILFGHWLVHAYGILSLTGFKELWYLSLVPAPAMFYIVTAQFTDPLKIHGD

Summary

EMBL
BABH01029895    RSAL01000022    RVE52386.1    NWSH01001593    PCG70765.1    KQ460045    + More
KPJ18177.1    KQ459604    KPI92315.1    AGBW02009936    OWR49541.1    ODYU01003861    SOQ43151.1    AGBW02012096    OWR45676.1    GBHO01021402    GBHO01021401    GBRD01018096    JAG22202.1    JAG22203.1    JAG47731.1    KK107078    QOIP01000011    EZA60454.1    RLU16630.1    KZ288194    PBC33835.1    JR049914    AEY61120.1    KK854446    PTY15925.1    KK852425    KDR24140.1    KQ981866    KYN34074.1    NNAY01000371    OXU28831.1    KQ982320    KYQ57724.1    GL762798    EFZ20754.1    GECL01001676    JAP04448.1    ACPB03008832    GAHY01001131    JAA76379.1    GL445975    EFN88681.1    KQ978530    KYN30311.1    GL888128    EGI66727.1    ADTU01019257    GL439621    EFN66908.1    KQ976488    KYM83513.1    KQ414741    KOC61980.1    AK417652    BAN20867.1    GBBI01000914    JAC17798.1    KQ978501    KYM93521.1    GDKW01001837    JAI54758.1    PYGN01000531    PSN44720.1    GEDC01022225    GEDC01019455    GEDC01019232    GEDC01010358    JAS15073.1    JAS17843.1    JAS18066.1    JAS26940.1    JH431970    GEBQ01025135    JAT14842.1    GECZ01003306    JAS66463.1    AJWK01014318    GEZM01026232    JAV87129.1    KQ434809    KZC06343.1    GFDF01011121    JAV02963.1    KQ435848    KOX71036.1    GDAI01002430    JAI15173.1    KQ971352    EFA06682.1    GANO01002113    JAB57758.1    GANP01005485    JAB78983.1    MWRG01013954    PRD24840.1    GFJQ02001245    JAW05725.1    GGLE01001210    MBY05336.1    JXUM01031157    KQ560911    KXJ80376.1    GAPW01002922    JAC10676.1    GDRN01057610    JAI65669.1    JXUM01037699    KQ561138    KXJ79598.1    IAAA01016968    LAA05835.1    CH477279    EAT44998.1    GFDL01011834    JAV23211.1    NEDP02005416    OWF41193.1    DS232199    EDS37205.1    AHAT01003879    HACA01013134    CDW30495.1    BT121368    ADD38298.1    GEFH01004519    JAP64062.1    AERX01049695    AERX01049696    AERX01049697    GACK01007525    JAA57509.1    BX004994    BC075939    AAH75939.1    GFPF01009217    MAA20363.1    GG666475    EEN66608.1    APCN01000875    AAAB01008987    EAA00861.3    CAAE01014551    CAF98170.1    GEDV01008401    JAP80156.1    AFYH01002560    AFYH01002561    RJVU01059333    ROJ78770.1    AXCM01000128   
Pfam
PF05571   JAMP        + More
PF00201   UDPGT
Interpro
IPR008485   JAMP        + More
IPR002213   UDP_glucos_trans       

Ontologies

Topology

Length:
297
Number of predicted TMHs:
6
Exp number of AAs in TMHs:
130.72872
Exp number, first 60 AAs:
10.24269
Total prob of N-in:
0.00927
POSSIBLE N-term signal
sequence
outside
1  -  51
TMhelix
52  -  70
inside
71  -  81
TMhelix
82  -  104
outside
105  -  148
TMhelix
149  -  171
inside
172  -  191
TMhelix
192  -  214
outside
215  -  233
TMhelix
234  -  256
inside
257  -  268
TMhelix
269  -  288
outside
289  -  297
 
 

Population Genetic Test Statistics

Pi
264.219949
Theta
217.200076
Tajima's D
1.771578
CLR
0.498952
CSRT
0.843857807109645
Interpretation
Uncertain
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