Gene

KWMTBOMO15193

Pre Gene Modal

BGIBMGA004967

Annotation

PREDICTED:_Down_syndrome_cell_adhesion_molecule-like_protein_Dscam2_[Amyelois_transitella]

Location

Bomo_Chr25(-):6471022-6485056      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.669 Nuclear   Reliability : 1.468

CDS

ATGGTAGTTGTTTGTTGGCAGCGACAGAGTGGCTTGAGTGGGAGACCACACACAAATTACACTATTCAAGCATTAGCTTATACTAATGTTGGAGACGGTGTTCCCGCTCATCCAGTTCATTGTAGCACCCAACAAGATACTCCTGGACCACCCGCAGCTGTTAAAGTTGTACCCACTTCAGTAACGTCATTAGCCATTAGTTGGTTACCACCTAATCGCCCGAGCGGTCCTATACTTTACTACACAGTGTTTTATAGAGAGCTTGGCAGGGACAGACCCCCGCAAACTACAACTGTCCAAACGGACGATAGTGAGTTTATGGTCGGATTAGGAGGATCGACAGAACTAAGAGCTTTAGCCGAAGGAGCTACCTATGAGGCTTGGGTGGCAGCTCATTCTGTAGTAGGAGAAGGAGAGCCGTCTGCTCCGCAACCTGCAACAACGACTTCTAGAGCGGGAGCTAGATTGCTGTCGTTCGGAGTGTGGGTTCGAGTACAGTGTGGTCATCCATTGAGGTTAGCATGTGCTTGGCGCGGGGAACCGGCTCCAAGAGCGCGATGGTTACGAGGGGACAGGCCGGTCACATATGACCCGAGGGCTACACTCACTCCTCATGGACATCTAGCAATACATGAAGTGGATGCTTCTACGAGCGGTAACTACACTTGCTCAGCTCGTAATTCGTTTGGTTCTGAAGAAGTGACGTATCGCGTTGAATGTGCCAGTCCGCCACTACCTCCTACGCTCACATTGGACTACGTGGCGCATAAAGAGGCCAAACTCTCCTTGAAAACAACACATCATCCATCGGCACCTCCTCACGGTTTCACGATCTGGTGGTTACGTGTGAGAGACGATTTGAACGACGGAACTGAACAGACGAATACACGAGGCGAAGAAGAAAGAAGATTAGAAACTGGCGGTGAAGTTGTTAGTGTGGTGCTAAGGGCGTTGTCTTGTGGTGCTGTGTATTCAGTCCGAGCTGTGGCCCATTCTAGAGCGGGACCCTCATCGTTTTCAGCACCGCTGTTGGTGCGAACTAAACCACCAGTTTTAGTTTGGGAAGGAGGAGGGGAGCTTGACAATCCAGAGGAACTTGCTGAAGCAGCTGTTTGGAGTAATAGCAGCGCGTTAGCTATAGATGCTCGTAGGGCTGTACGATGCGGGGCTCGTCTAGTGAGGCTGCAGTGGAGGAGGGCTGATGCTGCGGGCTCAGCTGCTTGGAGAGACGCTGATCTTACCTCATTGCACCACCACAGGGAGGTGGTGATCGGTGACCTCACCGCCGGAGCCTGGTATGGACTGCGTTTGTGGACGGCCACTGAATCTGCCAGACACCAAGCTACAATATATGCGGCTACTACTACGCATTCTGGAGAGCGTCTACGTCGTCCCGTGGCATTTCTCTCGGAAGGACCTCAGGTGACCACCGCCGGCTCCAACGCGGACACTGAGAGAGTTCTTGGGGCTGTGTCGTTAGCGTTTGCCGCACTAGCCGCGCTTGCTGTCACAGCCCTATTGCTTGTCCTTGTCGCGAAACGAAGCATGCTGTGGCCTTGCTCTGGTCAAACCGAGGAAGAAGTCCGACGCTGTAACCACTCAGTCGGCAGCACTGATAAATCGGTCTGCCCAGAACAGCAAAACATACGGAATTGTCAGCACGATTACAAACACGACAAACTATCGCCAGCGTCTGACGTATACGAGATAAGTCCGTATGCGACGTTTGCTGTGGGTGGCGAGGCCGCGACCGCGACCCTGGACCACACGTTGCAGTTCCGCACGTTCGGGCATCGCGACAACGATGCTCCCCCCCACAGACCGTGCAGAAAGCATCCTCAAAGACATCGAGATAGACCTGAAGTTGAGAAGCATCATTCAGATTGCGAATTGCAACAGTTGAGTCGATACGAGAAAGTTAGACCGCGGCACTGCGCTGGTACATCTTACTGTGTACCACTTTCCCATCACGGTGGGGGCAGCGGCGGTGGTGGTGGCAGCGGTGGTGGGTTTTCGGAAGTGTACGCGGGTGATTCCAGCGTGGAGTCGGGGCCGGGGTCACTCTCACCTCGCACGCACCTCGAGCACAGCTAG

Protein

MVVVCWQRQSGLSGRPHTNYTIQALAYTNVGDGVPAHPVHCSTQQDTPGPPAAVKVVPTSVTSLAISWLPPNRPSGPILYYTVFYRELGRDRPPQTTTVQTDDSEFMVGLGGSTELRALAEGATYEAWVAAHSVVGEGEPSAPQPATTTSRAGARLLSFGVWVRVQCGHPLRLACAWRGEPAPRARWLRGDRPVTYDPRATLTPHGHLAIHEVDASTSGNYTCSARNSFGSEEVTYRVECASPPLPPTLTLDYVAHKEAKLSLKTTHHPSAPPHGFTIWWLRVRDDLNDGTEQTNTRGEEERRLETGGEVVSVVLRALSCGAVYSVRAVAHSRAGPSSFSAPLLVRTKPPVLVWEGGGELDNPEELAEAAVWSNSSALAIDARRAVRCGARLVRLQWRRADAAGSAAWRDADLTSLHHHREVVIGDLTAGAWYGLRLWTATESARHQATIYAATTTHSGERLRRPVAFLSEGPQVTTAGSNADTERVLGAVSLAFAALAALAVTALLLVLVAKRSMLWPCSGQTEEEVRRCNHSVGSTDKSVCPEQQNIRNCQHDYKHDKLSPASDVYEISPYATFAVGGEAATATLDHTLQFRTFGHRDNDAPPHRPCRKHPQRHRDRPEVEKHHSDCELQQLSRYEKVRPRHCAGTSYCVPLSHHGGGSGGGGGSGGGFSEVYAGDSSVESGPGSLSPRTHLEHS

Uniprot

A0A194PHW4   A0A194RK19   A0A2A4K6Y1   A0A139WPD8   A0A139WPF3   A0A139WPP7   + More
A0A0T6AZU3   A0A0L0C0J5   B3LVQ3   A0A0P8XZR3   A0A1W4V5H6   A0A1W4UT57   A0A1W4USR1   A0A1B0BV85   A0A1B0FNH0   B4N9U7   A0A0M4ETQ6   A0A0Q9WFX9   A0A0Q9WGA5   B4LY43   A0A1A9ZZV3   H9J8A5   B4JTV0   W8BHF6   A0A1I8NKD2   A0A1I8Q183   A0A1I8Q151   A0A1I8Q177   A0A0R1E4W5   A0A0R1E3C0   B4PVB9   A0A0R1E506   A8JR35   A0A0Q9X218   Q9VEJ5   A0A0Q9X715   B4K7M7   Q7KSE9   B3P3D4   A0A336M8I3   A0A2H1VAH3   B4G2L9   A0A0R3NK49   A0A336KKP0   A0A3B0KAQ1   Q29A88   A0A0R3NG76   A0A0R3NGB7   A0A0R3NGP1   B4IBG9   A0A1W7R6Y5   A0A182YC33   A0A1J1HP71   A0A2W1BND6   A0A182VI12   A0A182LBP1   A0A182FCX3   Q7Q9I6   Q16QI5   A0A1S4FT36   A0A182QYC3   A0A3S2NBJ4   A0A212FEX3   A0A1B0CHP3   A0A026VYJ5   A0A084WCP8   A0A182J4M0   A0A0N1PFK5   A0A182RKW3   A0A194PP52   H9JW81  

Pubmed

26354079    18362917    19820115    26108605    17994087    19121390    + More
24495485    25315136    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    15632085    23185243    25244985    28756777    20966253    12364791    17510324    22118469    24508170    24438588   

EMBL

KQ459604    KPI92314.1    KQ460045    KPJ18178.1    NWSH01000091    PCG79678.1    + More
KQ971307    KYB29804.1    KYB29803.1    KYB29801.1    LJIG01022460    KRT80459.1    JRES01001161    KNC24949.1    CH902617    EDV43677.1    KPU80416.1    JXJN01021159    JXJN01021160    CCAG010010693    CCAG010010694    CCAG010010695    CCAG010010696    CCAG010010697    CH964232    EDW80662.2    CP012526    ALC46292.1    CH940650    KRF83564.1    KRF83565.1    EDW67931.1    BABH01027510    BABH01027511    BABH01027512    BABH01027513    CH916374    EDV91529.1    GAMC01005845    JAC00711.1    CM000160    KRK02722.1    KRK02723.1    EDW95788.2    KRK02725.1    KRK02724.1    AE014297    ABW08696.1    CH933806    KRG01529.1    AAF55426.3    KRG01530.1    EDW15371.2    AAS65164.2    CH954181    EDV48714.1    UFQS01000550    UFQT01000550    SSX04800.1    SSX25163.1    ODYU01001341    SOQ37392.1    CH479179    EDW24064.1    CM000070    KRT00047.1    SSX04801.1    SSX25164.1    OUUW01000005    SPP80648.1    EAL27462.3    KRT00045.1    KRT00046.1    KRT00048.1    KRT00049.1    KRT00043.1    KRT00044.1    CH480827    EDW44727.1    GEHC01000744    JAV46901.1    CVRI01000006    CRK88017.1    KZ149956    PZC76468.1    AAAB01008900    EAA09501.4    CH477747    EAT36655.1    AXCN02001019    AXCN02001020    RSAL01000273    RVE43150.1    AGBW02008880    OWR52305.1    AJWK01012559    KK107570    EZA48842.1    ATLV01022806    ATLV01022807    ATLV01022808    ATLV01022809    ATLV01022810    ATLV01022811    KE525337    KFB47992.1    KQ460970    KPJ10147.1    KQ459597    KPI95211.1    BABH01025528   

Proteomes

UP000053268    UP000053240    UP000218220    UP000007266    UP000037069    UP000007801    + More
UP000192221    UP000092460    UP000092444    UP000007798    UP000092553    UP000008792    UP000092445    UP000005204    UP000001070    UP000095301    UP000095300    UP000002282    UP000000803    UP000009192    UP000008711    UP000008744    UP000001819    UP000268350    UP000001292    UP000076408    UP000183832    UP000075903    UP000075882    UP000069272    UP000007062    UP000008820    UP000075886    UP000283053    UP000007151    UP000092461    UP000053097    UP000030765    UP000075880    UP000075900   

PRIDE

H9J8A5    Q9VEJ5    Q7KSE9    H9JW81   

Pfam

PF07679   I-set        + More
PF00041   fn3
PF13895   Ig_2
PF00047   ig

Interpro

IPR036179   Ig-like_dom_sf        + More
IPR003598   Ig_sub2       
IPR036116   FN3_sf       
IPR013098   Ig_I-set       
IPR013783   Ig-like_fold       
IPR007110   Ig-like_dom       
IPR003599   Ig_sub       
IPR003961   FN3_dom       
IPR013106   Ig_V-set       
IPR013151   Immunoglobulin       

SUPFAM

SSF48726   SSF48726        + More
SSF49265   SSF49265       

Gene 3D

2.60.40.10    

CDD

cd00063  FN3

ProteinModelPortal

A0A194PHW4   A0A194RK19   A0A2A4K6Y1   A0A139WPD8   A0A139WPF3   A0A139WPP7   + More
A0A0T6AZU3   A0A0L0C0J5   B3LVQ3   A0A0P8XZR3   A0A1W4V5H6   A0A1W4UT57   A0A1W4USR1   A0A1B0BV85   A0A1B0FNH0   B4N9U7   A0A0M4ETQ6   A0A0Q9WFX9   A0A0Q9WGA5   B4LY43   A0A1A9ZZV3   H9J8A5   B4JTV0   W8BHF6   A0A1I8NKD2   A0A1I8Q183   A0A1I8Q151   A0A1I8Q177   A0A0R1E4W5   A0A0R1E3C0   B4PVB9   A0A0R1E506   A8JR35   A0A0Q9X218   Q9VEJ5   A0A0Q9X715   B4K7M7   Q7KSE9   B3P3D4   A0A336M8I3   A0A2H1VAH3   B4G2L9   A0A0R3NK49   A0A336KKP0   A0A3B0KAQ1   Q29A88   A0A0R3NG76   A0A0R3NGB7   A0A0R3NGP1   B4IBG9   A0A1W7R6Y5   A0A182YC33   A0A1J1HP71   A0A2W1BND6   A0A182VI12   A0A182LBP1   A0A182FCX3   Q7Q9I6   Q16QI5   A0A1S4FT36   A0A182QYC3   A0A3S2NBJ4   A0A212FEX3   A0A1B0CHP3   A0A026VYJ5   A0A084WCP8   A0A182J4M0   A0A0N1PFK5   A0A182RKW3   A0A194PP52   H9JW81  

PDB

4PBX     E-value=1.37522e-08,     Score=145

KEGG

101744257    no KO assigned | (RefSeq) uncharacterized LOC101744257

GO

GO:0016021   GO:0030017   GO:0042802   GO:0007156   GO:0005887   GO:0005515   GO:0004672   GO:0006468   GO:0017183   GO:0006391   GO:0031167   GO:0003677   GO:0008408   GO:0005112   GO:0015930  

Length:

697

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.47942

Exp number, first 60 AAs:

0.00554

Total prob of N-in:

0.16870

outside

1  -  488

TMhelix

489  -  511

inside

512  -  697

 

 

Pi

35.378449

Theta

189.675061

Tajima's D

1.38163

CLR

0.244314

CSRT

0.758862056897155

Interpretation

Uncertain