SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15192
Pre Gene Modal
BGIBMGA004945
Annotation
Protein_NDRG3_[Operophtera_brumata]
Location in the cell
Extracellular   Reliability : 1.272 PlasmaMembrane   Reliability : 1.394
 

Sequence

CDS
ATGCCGACATCCGTGCACGAAAACGTTGCTCTCCTCAACATGATGTCTTCGGATAATTACGAAGACGATCTCAAAAGTGTTCAACTGCATTTTCCATCCGAAAGACGTTTGCAAAGTGACGGCGCATGCGTGGAGGAGAGGGTGCGGACTTCCCGCGGCGACATCCTCGTTGCCGTACGAGGGGACCGCAGCAAACGAGCTATAATTACTTATCATGACCTTGGACTCAATTATGCCGCCAACTTTCAGGCGTTCTTTAACTTCGTCGATATGAGATCAATTCTGGAACAATTTTGCATCTACCACGTAAACGCTCCTGGCCAAGAAGAGGGATCTCCGACTCTACCCGAGGATTACACCTATCCTAGCATGGACGCTCTGGCGTCTCAGATCGACTTCGTCTTGGGTCATTTTGGTATACGATCTTTCATCGGTTTCGGAGTGGGTGCCGGAGCGAACATATTATCGCGTTATGCCATCATCAACCCCCAAAAAGTAGATGCTTTAGTGCTCATTAACTGCACCTCTACCCAAGCGGGTTGGACCGAGTGGCTGTACCAAAAAATTAATACAAGACAACTGCGCGCTAACGGAATGACTCAAGGCGCGCTGGACTACCTGATGTGGCACCACTTCGGTCGAAGCACGGAGGATCGCAACCATGACCTCGCTCAAGTATACAAAGATTGCTTTTCTCATGTGAACCCTGTCAATTTGTCATTGTTCATCGACAGCTACTTACGGCGCACGGACCTGAGTATAGCGCGCGATTCAAACACACTGAAGGTGCCAGTTCTAAATGTGACCGGCGCTTTGTCGCCTCATGTCGATGATACGGTGACATTTAACGGGCGACTAGATCCCGCTAAGACGTCGTGGTTTAGCATTTCCGATAGTGGAATGGTATTGGAAGAGCAGCCAAGTAAGATAGCTGAGGCGTTCAAGTTGTTTCTCCAGGGCGAAGGGTACTTGAGGTAG
Protein
MPTSVHENVALLNMMSSDNYEDDLKSVQLHFPSERRLQSDGACVEERVRTSRGDILVAVRGDRSKRAIITYHDLGLNYAANFQAFFNFVDMRSILEQFCIYHVNAPGQEEGSPTLPEDYTYPSMDALASQIDFVLGHFGIRSFIGFGVGAGANILSRYAIINPQKVDALVLINCTSTQAGWTEWLYQKINTRQLRANGMTQGALDYLMWHHFGRSTEDRNHDLAQVYKDCFSHVNPVNLSLFIDSYLRRTDLSIARDSNTLKVPVLNVTGALSPHVDDTVTFNGRLDPAKTSWFSISDSGMVLEEQPSKIAEAFKLFLQGEGYLR

Summary

EMBL
BABH01029906    NWSH01000091    PCG79677.1    ODYU01000905    SOQ36369.1    JTDY01002937    + More
KOB70456.1    KQ460045    KPJ18179.1    KQ459604    KPI92313.1    AGBW02006247    OWR55224.1    KQ982753    KYQ51225.1    KQ976885    KYN07391.1    KQ979302    KYN21983.1    KQ981523    KYN40209.1    KQ971334    EFA01066.1    GL453920    EFN75183.1    QOIP01000002    RLU25659.1    JR035902    AEY56771.1    JR035898    JR035899    AEY56767.1    AEY56768.1    GL762997    EFZ20356.1    JR035903    AEY56772.1    KQ976530    KYM81718.1    GL438632    EFN68689.1    KQ434772    KZC03934.1    GBYB01004866    GBYB01004876    JAG74633.1    JAG74643.1    GBYB01003364    JAG73131.1    GBYB01003360    JAG73127.1    KK107069    EZA60767.1    KQ414736    KOC62101.1    KQ763659    OAD54893.1    JR035900    JR035901    AEY56769.1    AEY56770.1    JR035904    AEY56773.1    NEVH01002989    PNF41064.1    KK852768    KDR16945.1    GEZM01009844    JAV94267.1    JR035905    AEY56774.1    GEZM01009845    JAV94266.1    PNF41065.1    AAZX01002864    KB631607    ERL84619.1    GEZM01009846    JAV94265.1    GEZM01009843    JAV94268.1    GEDC01020176    JAS17122.1    GEDC01008213    JAS29085.1    GEDC01028224    JAS09074.1    GFDL01003693    JAV31352.1    GECU01034561    JAS73145.1    GFDL01003687    JAV31358.1    GFDL01000458    JAV34587.1    GFDL01000515    JAV34530.1    GECZ01024276    JAS45493.1    GFDL01000498    JAV34547.1    APCN01000634    GECU01009791    GECU01004409    JAS97915.1    JAT03298.1    AAAB01008944    GFDL01003674    JAV31371.1    GFDL01003677    JAV31368.1    GECU01005188    JAT02519.1    GFDL01003673    JAV31372.1    GECU01012142    JAS95564.1    EAA44402.3    GEBQ01028862    JAT11115.1    GECZ01000839    JAS68930.1    GBHO01040673    GBRD01002285    JAG02931.1    JAG63536.1    AJWK01022691    AJWK01022692    AJWK01022693    AJWK01022694    AJWK01022695    ATLV01016150    KE525057    KFB41078.1    AGBW02013811    OWR42739.1    CVRI01000054    CRK99923.1    AXCN02000732    GFDL01008536    JAV26509.1    GFDL01008533    JAV26512.1    GEBQ01018768    JAT21209.1    CH933808    KRG04627.1    KRG04628.1    GEDC01007471    JAS29827.1    GBHO01016441    GDHC01005623    JAG27163.1    JAQ13006.1    KRG04625.1    GBHO01016437    GBRD01015544    JAG27167.1    JAG50282.1    GEDC01001704    JAS35594.1    KRG04623.1    GGFK01006464    MBW39785.1    EZ423369    ADD19645.1    GANO01002990    JAB56881.1    GEDC01025182    GEDC01025069    JAS12116.1    JAS12229.1    GEDC01011597    GEDC01007898    JAS25701.1    JAS29400.1    LJIJ01001385    ODM91893.1    CH940648    KRF80328.1    JXJN01013840    JXJN01013841    AXCM01002314    GEBQ01014520    JAT25457.1    CRK99925.1   
Pfam
PF03096   Ndr
Interpro
IPR029058   AB_hydrolase        + More
IPR004142   NDRG       
SUPFAM
SSF53474   SSF53474       
Gene 3D
PDB
2XMR     E-value=4.43395e-50,     Score=499

Ontologies

Topology

Length:
325
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
5.95013
Exp number, first 60 AAs:
0
Total prob of N-in:
0.10583
outside
1  -  325
 
 

Population Genetic Test Statistics

Pi
308.307019
Theta
218.276002
Tajima's D
1.25352
CLR
0.000225
CSRT
0.724963751812409
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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