Gene
KWMTBOMO15179 Validated by peptides from experiments
Pre Gene Modal
BGIBMGA004940
Annotation
PREDICTED:_synoviolin-like_protein_isoform_X1_[Bombyx_mori]
Location in the cell
PlasmaMembrane Reliability : 3.352
Sequence
CDS
ATGAAGGCAGTGTTAGCGACGGTGATCAGTCTCGCGCTAACCACTGTGGTTATCGGCAATGCATATTACCAAAAGAAACAGTTTTACCCTTCGATAGTTTATTTAACAAATTCAAATCCAAGCATGGCAGTAATGTATTTGCAAGCGTTTATTTTAGTTTTATTGGTGGGAAAAATGCTAAGGAAAATATTCTTTGGTCAACTTCGACCTGCTGAGTTTGAGCATTTAATAGAAAGGTCATGGTATGCCATAACAGAGACGTGCTTAGCATTTACTGTCTTCAGAGATGATTTCAATCCAAAGTTCATTGCTCTCTTTACACTGTTGTTATTCCTGAAAGCATTCCACTGGCTTGCTGAAGATAGAGTTGATTATATGGAGAGAAGTCCTGTTATTGGATGGGTGTTTCATATAAGGATTCTAAGTTTGCTAATGTTGTTGGCACACGCAGACTTCTACTTCATTCACCATGCGTATCATGTCACTACATCAAAAGGCCCATCGGTGCAGCTGGTATTTGGTTTTGAGTACAGCATACTTATAATCATGATTGCCAATATATTGATTAAGTATGTTCTACATGCCATCGACTCTCGTTGGGAAGCACCGTGGGAGAGCAAAGCAGCAGTTCTATTGTACACAGAACTTGCTATAAATTTCTTGAAAGTACTTCTCTATATTGGATTTGTAGCTGTCATGGTCCGCATTTATACTCTTCCGTTATTTGCATTCCGGCCCATGTATGAAACTATGAGGAGTTTCAAGAAAGCATACAATGATGTGGTCCTCTCCCGACGTGCAATACGCAATATGAACACACTGTATCCGGATGCGACACAAGCAGAACTCGAAGCTGCTGATAATGAATGTATTATTTGTCGAGAGGAAATGCATTCTGGTGCGAAGAAGCTGCCGTGCAACCACATTTTCCACGCAGCGTGCCTCCGCCTGTGGTTCCAGCGCCAGCAGACGTGCCCGACGTGTCGTCTCAACGTGCTGCGCGCGCCCGCAGCCGAGCCCGGCGCCGCGCCCCGCGCCCCCGACGCCGCACCCCCGCCGCCCCCTGCCGCCGCGCCCGCCCCGCCGCCCTTCCCCAACATGCCGCCTCCACCACCATTGATGGCGTGGCCCCCGCCGCCGCCACCGCGACCCGCCAACCTCGCCGTACTCACTACTGCCGAGCTGCAACGTATGGAGGGTAACGAACGTCGGAACATTGAGGCTAGATTACAGCTGCTACGCGAGATCCAGGCCATGCTGGACGCTTCTGTTCTCCTCATGCAGCAGTACTCTACAGTCGTCGCTAACTCTGCTCAGAATAACGTTAGTGTTGCCACACAAACCGAAACTCAACCCGACCCTGTCTCTGAAGTTAAAGTAAAAACTGAACCTGATGTAGTCCCCAGTACATCTGAGTACAGGTCGCCATCTCCGGTGCCGTCGACCAGCAAACAGGAAATCAAACCTGAGGAGTTGTCCGACGCAACTGATTCCGATAGAGTCAAGACTGACGCCGACACCGAGGAGTTGAGAAGACGTCGACTGCAAAAGTTTACCTTGGATAAATGA
Protein
MKAVLATVISLALTTVVIGNAYYQKKQFYPSIVYLTNSNPSMAVMYLQAFILVLLVGKMLRKIFFGQLRPAEFEHLIERSWYAITETCLAFTVFRDDFNPKFIALFTLLLFLKAFHWLAEDRVDYMERSPVIGWVFHIRILSLLMLLAHADFYFIHHAYHVTTSKGPSVQLVFGFEYSILIIMIANILIKYVLHAIDSRWEAPWESKAAVLLYTELAINFLKVLLYIGFVAVMVRIYTLPLFAFRPMYETMRSFKKAYNDVVLSRRAIRNMNTLYPDATQAELEAADNECIICREEMHSGAKKLPCNHIFHAACLRLWFQRQQTCPTCRLNVLRAPAAEPGAAPRAPDAAPPPPPAAAPAPPPFPNMPPPPPLMAWPPPPPPRPANLAVLTTAELQRMEGNERRNIEARLQLLREIQAMLDASVLLMQQYSTVVANSAQNNVSVATQTETQPDPVSEVKVKTEPDVVPSTSEYRSPSPVPSTSKQEIKPEELSDATDSDRVKTDADTEELRRRRLQKFTLDK
Summary
Uniprot
ProteinModelPortal
PDB
2LXH
E-value=1.92537e-12,
Score=176
Ontologies
PATHWAY
GO
Topology
Length:
522
Number of predicted TMHs:
6
Exp number of AAs in TMHs:
126.31543
Exp number, first 60 AAs:
40.46463
Total prob of N-in:
0.03056
POSSIBLE N-term signal
sequence
outside
1 - 3
TMhelix
4 - 23
inside
24 - 34
TMhelix
35 - 57
outside
58 - 101
TMhelix
102 - 119
inside
120 - 130
TMhelix
131 - 153
outside
154 - 172
TMhelix
173 - 195
inside
196 - 215
TMhelix
216 - 238
outside
239 - 522
Population Genetic Test Statistics
Pi
259.474159
Theta
194.861448
Tajima's D
1.253695
CLR
0.168016
CSRT
0.732813359332033
Interpretation
Uncertain
