SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15177
Pre Gene Modal
BGIBMGA004976
Annotation
PREDICTED:_AT-rich_interactive_domain-containing_protein_4B_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 4.377
 

Sequence

CDS
ATGGTGGCAGCGGGAGGGGGCGGCGCGGCGGGGGCGGGGGGTCCGGCTGCGGGCGAGGCGCCGGGCTGGGGACGCCGACACGCGCTCATCGACAACACGCCGCCCACCACGCCCGACAGCAGCCTCGACATGTCGCCACACAGGGACCGTCGTATGTCTGAACGCGACAGTCCGTCGGAACGCAAAGACGACGATGATGAAGTACGACCGATTGATGCGTCACTGGATATTGAAAAACCACACGAGTCGTCAGCATGCGGGCGGTCCCGCAAGGCGTCAGAGAGCTCCGGGGCGGGCGCGGGGGCGGGGCGGGGGCGCAGGCGGCGCCGCGACACCGACGAGCTCGGCGCGCACCACCCGCCGCACAAGTACAACTTCTATGTCGAACTTGATCCATCATGGGATTCTCAGACGCGTATAAACGTTCTTACAACACGACTAACAGATTTGCGTAAAACCTATCATTCGGTGAAGGCGGAACTAGCCGCAATCGATCGACGTCGCAAGAAACTACGTCGGAAGGAGAGAGAAGCCGTAAAAGCTGCTAAAGCCGCGTGTTCGTGA
Protein
MVAAGGGGAAGAGGPAAGEAPGWGRRHALIDNTPPTTPDSSLDMSPHRDRRMSERDSPSERKDDDDEVRPIDASLDIEKPHESSACGRSRKASESSGAGAGAGRGRRRRRDTDELGAHHPPHKYNFYVELDPSWDSQTRINVLTTRLTDLRKTYHSVKAELAAIDRRRKKLRRKEREAVKAAKAACS

Summary

Pfam
PF11717   Tudor-knot        + More
PF08169   RBB1NT
PF01388   ARID
Interpro
IPR025995   Tudor-knot        + More
IPR016197   Chromo-like_dom_sf       
IPR012603   RBB1NT       
IPR001606   ARID_dom       
IPR036431   ARID_dom_sf       
IPR028853   ARID4B       
SUPFAM
SSF46774   SSF46774        + More
SSF54160   SSF54160       
Gene 3D

Ontologies

Topology

Subcellular location
Nucleus  
Length:
187
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01496
Exp number, first 60 AAs:
0.01496
Total prob of N-in:
0.03839
outside
1  -  187
 
 

Population Genetic Test Statistics

Pi
222.119256
Theta
145.90409
Tajima's D
2.196003
CLR
0.174049
CSRT
0.909104544772761
Interpretation
Uncertain
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