Gene

KWMTBOMO15176  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004939

Annotation

PREDICTED:_pre-mRNA-processing_factor_39_isoform_X1_[Amyelois_transitella]

Location

Bomo_Chr25(+):6114694-6125558      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.429

CDS

ATGGAAGATGAAACAAGCTCCGATAATCAGAAAGGATCTGAAAATCCCATGGATACAGACGAAGGTCCTTTGATAAATGAGAACTCCAACGGACTTTCTCATTTGTTAACAGAGGGCGAATTTAATAGTGTCGATGCTGCTGTTGATGAGTCGTCGACATCTAATCAATGTTTCTTGAACGCCGTGGAATTATCAGCTGGAAGCGCTGGTGACTACCTCGAAAACAACGGCCCTCGCTTCAGTACAGATTCTTTTGACATTGGTGATAATGCTGTAACTTTTCCCAATGATTCTCTAAATAGCGCATTGACTGAAGATAATTCTATTCAAAGTGACTCTGCATCCCACAAAGCAGTTTTAGACACAGACAGTAGGCAGTCTGAAAGTCAACATGCAACAGATTCCAATGTAGGAGAGATAAATGAAAACTCTGGCAATGACTCTAACTTCGCCACTGAGCATGTAAATTTAAATGTGGATAAATCAGAGCAATTGGAAATTGTTGAGCCATGTAGCAGTCCAGTAAAAGATCCAGTGATTAAGCAGGATGAAGGCAAAGAGTTTAAAAACCAAAGAGAAGTAGATGATATCAAAGAACAATCACAAGACTCAGCAAGTAAGATTGGTGGTGCTGAAGAAACAGAAGTAGTATCAGAGGATGAACTTCCTGAAGTGCAAAAGCCGAGCATCAAAGATGCTGAGAATGTATCTGATGATGAGTTGCCGGGGCCGAAACCTGCAGAACTGCCTGCTGATACAGAGGTTGTATCAGAAGATGAGCTACCTGCATCCAAGAAAGAGTCTAGAAAACGAAAACCAGATGAAGAGAGAAGTAATTATGATCCAGGATCACCAACATCAGAAGGTGAATCTTCCACAAAAAAACAAGCTATTACCAAGAACGGCGAAAGCAAGCCCATACCTGCCGAAAAGAGACCTTCAGTTGATGAAAAACCTAAAAAGAAAGTTTTACCGGAATTGGAAAAGTACTGGAAAGTTGTGAATGATGATCCGACTGACTTCACTGGGTGGACCTACCTATTACAATATGTCGATCAAGAGAGCGATGTTGAAGCTGCACGTGAAGCCTATGACGCCTTTTTATCCCACTATCCTTATTGCTATGGATATTGGAGAAAGTTTGCAGATTATGAAAAACGTAAAGGAAGTAAAAAGAAGTGCTTAGAGGTTTTGGAAAGGGGACTTAAAGCTATACCTTTATCCGTAGACCTCTGGATACATTACCTCAATCATATAAAAGCGACTAAAACCGAAGACCATGCGTACATCAGATCTCAGTATGAACGAGCCATAGATGCATGCGGACTAGAATTTCGCTCGGATCGTCTTTGGGAGTCTTACATCAAATGGGAAGCGGAAAATGGTTCCGCTCTCAATGTCACGAATATCTACGATCGTCTTTTGGCAACACCCACCTTAGGGTACACGTCACACTTCGACAATTTCCAGGAGCACGTGATGTCGGAGCCGGTGACCGGCGTGGTGAGCCACGCGGAGCTGGTGCGGCTGCGGGGCGAGGTGCGGGACGCGGCCGGCGCGCAGCCCAGCCTCGACCTGCCGCCCGGGGAGGACGAGCCCGTCGACCATGTCGCATCCGATGAAGAGGCGCAAGCCATCAAGGAACGGATTGTTGCAGCTCGAAGAAAAATTCATAAAACGACCGGCGAAGAAGTAACTGCGAGGTGGACTTTCGAAGAAGGAATCAAGCGGCCTTATTTCCACGTGAAGCCCCTGGAACGTTGCCAGCTAAAGAACTGGAAGGCGTACCTCGAATGGGAGAAGCACCACGGTTCGTTCAAGCGAGCCCTCGTGCTCCACGAGAGATGCCTCATTGCATGTGCCTTATATGAAGAATTCTGGATGAAGCTTATAAAGTTTCTGGAAGAACGTGCTGAACAAGATCCTGAAGTGATAGCAATAGAACGGGAAGTACTAGAGCGAGCCTGCACAGTGCATCACCTCGACAAGCCAGAGCTCCACCTACACTGGGCACACTTCGAAGAGGTGCAGGGCAATACACTGAAAGCTGCCGAGATACTTGATCGTATAGAGAAAACCTGTCCCAATCTCGTACAAATACAGTACAGGCGAGTGAACCTCGAGCGACGACGCGGCGACTACGAGAAGTGCTCTCAGCTATACGAAACGTACATCAGCACTTCGAAGAACAAGTCGCTGGCGTCTGCGCTCGCCATCAAGTACGCGCGGTTCCTGCAGCACGTGCGCCGCCAGCCCGCCGCCGCCCGCGCCGCGCTCGACGACGCCGTCGCCAAGGACCCGCTCAACCCGCGCCTGCACCTGCAGAGACTTGACCTCGCCATCAACACTCCCGGCGTCACCTACGAAGAGTTGGATGAGCTGGCACAGTCGTACTCGAGACAGGAGGGCGCGGACACGGAGGTGAGCGCGCACATGGCGTGGCGCCGCCGCGAGCTCGCGGAGGAGCTGGGCAGCGCCGCGCACGCCCGCGCCGCACACGCGCACGCGCGCGCTCTCGCCAAACATCTCCGCAAGCGCGCCCGCAAAGACAAGCACGACCCGCCGCCGCCGCCAGCAGTAACTGATTCTAAGAAAAAAGAGAGTACGGCAACCGCCAATTCTGTTCCGACGACGAATGCGAATTACTACGCGCCGACGACAAACACGCAGTCCTACGACCAGTCGTACACGCAGTCCTACCAGCCGACCTGGGGCTACCAGCAGCCCCCCGGGCCCTACCAACACCACCCCCACGCCTGGCCGCAGTATCCCAACTACTATTAG

Protein

MEDETSSDNQKGSENPMDTDEGPLINENSNGLSHLLTEGEFNSVDAAVDESSTSNQCFLNAVELSAGSAGDYLENNGPRFSTDSFDIGDNAVTFPNDSLNSALTEDNSIQSDSASHKAVLDTDSRQSESQHATDSNVGEINENSGNDSNFATEHVNLNVDKSEQLEIVEPCSSPVKDPVIKQDEGKEFKNQREVDDIKEQSQDSASKIGGAEETEVVSEDELPEVQKPSIKDAENVSDDELPGPKPAELPADTEVVSEDELPASKKESRKRKPDEERSNYDPGSPTSEGESSTKKQAITKNGESKPIPAEKRPSVDEKPKKKVLPELEKYWKVVNDDPTDFTGWTYLLQYVDQESDVEAAREAYDAFLSHYPYCYGYWRKFADYEKRKGSKKKCLEVLERGLKAIPLSVDLWIHYLNHIKATKTEDHAYIRSQYERAIDACGLEFRSDRLWESYIKWEAENGSALNVTNIYDRLLATPTLGYTSHFDNFQEHVMSEPVTGVVSHAELVRLRGEVRDAAGAQPSLDLPPGEDEPVDHVASDEEAQAIKERIVAARRKIHKTTGEEVTARWTFEEGIKRPYFHVKPLERCQLKNWKAYLEWEKHHGSFKRALVLHERCLIACALYEEFWMKLIKFLEERAEQDPEVIAIEREVLERACTVHHLDKPELHLHWAHFEEVQGNTLKAAEILDRIEKTCPNLVQIQYRRVNLERRRGDYEKCSQLYETYISTSKNKSLASALAIKYARFLQHVRRQPAAARAALDDAVAKDPLNPRLHLQRLDLAINTPGVTYEELDELAQSYSRQEGADTEVSAHMAWRRRELAEELGSAAHARAAHAHARALAKHLRKRARKDKHDPPPPPAVTDSKKKESTATANSVPTTNANYYAPTTNTQSYDQSYTQSYQPTWGYQQPPGPYQHHPHAWPQYPNYY

Uniprot

H9J5Z8   A0A2A4JM39   A0A3S2TD14   A0A194RL97   A0A194PG71   A0A212ENJ8   + More
A0A1W4X7B7   A0A1W4X761   D6WSZ2   U4U7D3   A0A2J7PR87   A0A2J7PR78   A0A2J7PR71   A0A232FBM5   K7IUU3   A0A067R7B3   A0A1B6C0I2   A0A1B6EH60   E0VIE7   A0A195B657   A0A158NI42   E0VIE6   E9IBA9   A0A195EG00   F4WGD5   A0A195F0W3   A0A026WTH6   E2BV81   E2ALU2   A0A088A060   T1HUU8   A0A2P8ZK66   A0A2A3E534  

Pubmed

19121390    26354079    22118469    18362917    19820115    23537049    + More
28648823    20075255    24845553    20566863    21347285    21282665    21719571    24508170    30249741    20798317    29403074   

EMBL

BABH01029932    NWSH01001069    PCG72788.1    RSAL01000329    RVE42503.1    KQ460045    + More
KPJ18194.1    KQ459604    KPI92297.1    AGBW02013634    OWR43072.1    KQ971352    EFA06677.2    KB632046    ERL88258.1    NEVH01022633    PNF18853.1    PNF18843.1    PNF18840.1    NNAY01000550    OXU27737.1    AAZX01002640    KK852653    KDR19350.1    GEDC01030290    JAS07008.1    GEDC01000057    JAS37241.1    DS235199    EEB13153.1    KQ976579    KYM79991.1    ADTU01016267    EEB13152.1    GL762111    EFZ22139.1    KQ978957    KYN27091.1    GL888128    EGI66902.1    KQ981897    KYN33749.1    KK107111    QOIP01000011    EZA58966.1    RLU16541.1    GL450824    EFN80373.1    GL440629    EFN65612.1    ACPB03018896    PYGN01000032    PSN56889.1    KZ288379    PBC26604.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053240    UP000053268    UP000007151    + More
UP000192223    UP000007266    UP000030742    UP000235965    UP000215335    UP000002358    UP000027135    UP000009046    UP000078540    UP000005205    UP000078492    UP000007755    UP000078541    UP000053097    UP000279307    UP000008237    UP000000311    UP000005203    UP000015103    UP000245037    UP000242457   

PRIDE

H9J5Z8   

Pfam

PF05843   Suf        + More
PF13174   TPR_6

Interpro

IPR011990   TPR-like_helical_dom_sf        + More
IPR003107   HAT       
IPR008847   Suf       
IPR019734   TPR_repeat       

SUPFAM

SSF48452   SSF48452       

Gene 3D

1.25.40.10    

ProteinModelPortal

H9J5Z8   A0A2A4JM39   A0A3S2TD14   A0A194RL97   A0A194PG71   A0A212ENJ8   + More
A0A1W4X7B7   A0A1W4X761   D6WSZ2   U4U7D3   A0A2J7PR87   A0A2J7PR78   A0A2J7PR71   A0A232FBM5   K7IUU3   A0A067R7B3   A0A1B6C0I2   A0A1B6EH60   E0VIE7   A0A195B657   A0A158NI42   E0VIE6   E9IBA9   A0A195EG00   F4WGD5   A0A195F0W3   A0A026WTH6   E2BV81   E2ALU2   A0A088A060   T1HUU8   A0A2P8ZK66   A0A2A3E534  

PDB

6G70     E-value=3.0258e-104,     Score=971

KEGG

101745895    K13217 pre-mRNA-processing factor 39 | (RefSeq) pre-mRNA-processing factor 39

GO

GO:0006396   GO:0000395   GO:0071004   GO:0005685   GO:0000243   GO:0005634   GO:0006397   GO:0005515   GO:0004164   GO:0017183   GO:0006391   GO:0031167   GO:0003677   GO:0008408   GO:0005112   GO:0015930  

Length:

927

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00003

outside

1  -  927

 

 

Pi

254.159982

Theta

186.587496

Tajima's D

1.397039

CLR

0.031959

CSRT

0.762161891905405

Interpretation

Uncertain