Gene

KWMTBOMO15161

Annotation

LPS-induced_TNF-alpha_factor_[Operophtera_brumata]

Location

Bomo_Chr25(-):5963485-5964093      View in EpiBrowser

Transcription factor

zf-LITAF-like

Location in the cell

Extracellular   Reliability : 1.58 PlasmaMembrane   Reliability : 1.757

CDS

ATGATGAGTGATGGTATAAATCCAGCCCAGAGTGATTCTGTCCAAGCAGACTTTAATGTAGAAACTGTAAATTATGTCAGATCAGAACCTCCACCATACACTCCTTGGGATCAGAGAAATGTGATAGAAGCACCTGTTATACATCAAACAGTAATAATACAACCACAACTGAAGGCTTCACCAATATTTTTTCATTGCCCTAAATGTAATGAGACAGTTCTCACAAAAGTAGAGTATAAAAACTCAAAAAAAACTCATATGTTGGCTGGCTTCATATGTGGATTTACATTATGGTGTATGCTATGTTGTCTTGCAGCAATGCCGTACATTTTCCCACTGTTTAAGAAAACAAGGCATTATTGTCCAAATTGCAATCTGTTTTTAGGTCAATACTCTAAATTTTAA

Protein

MMSDGINPAQSDSVQADFNVETVNYVRSEPPPYTPWDQRNVIEAPVIHQTVIIQPQLKASPIFFHCPKCNETVLTKVEYKNSKKTHMLAGFICGFTLWCMLCCLAAMPYIFPLFKKTRHYCPNCNLFLGQYSKF

Uniprot

M1SWX5   A0A0L7LPV5   A0A2H1WQ01   A0A194PHT6   A0A194RK47   A0A212EZ36   + More
A0A182PVK7   A0A182JK51   B4J439   A0A2W1BQA8   A0A182RWG6   A0A1E1W5S5   A0A182TNI9   A0A1C7CZ26   A0A194R6U3   A0A182QYK8   A0A182V1S5   A0A182X867   A0A1S4H0Q8   A0A182HZ05   B4LIS4   A0A194RKY7   A0A2A4JW93   U5ES92   A0A1L8EIM5   A0A0N9JT83   A0A1L8EIR6   A0A1B0CVX8   A0A1E1WDX2   A0A1I8P1G7   A0A1L8E2T6   A0A1L8E397   A0A182YMU6   A0A182RWG5   B4MQC6   B4KP90   Q8MME9   B4QHL1   J9Y078   B4I889   A0A182PVK6   A0A2P8Y5C1   A0A2A4JWY3   W5XU98   B4P5J6   A0A182NAP5   A0A034WA13   A0A0C9QS75  

Pubmed

26227816    26354079    22118469    17994087    28756777    20966253    + More
12364791    26056818    25244985    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    22936249    29403074    17550304    25348373   

EMBL

KC242465    AGG38002.1    JTDY01000430    KOB77216.1    ODYU01010192    SOQ55150.1    + More
KQ459604    KPI92284.1    KQ460045    KPJ18208.1    AGBW02011379    OWR46750.1    CH916367    EDW02645.1    KZ149983    PZC75755.1    GDQN01008729    JAT82325.1    KQ460615    KPJ13538.1    AXCN02000669    AAAB01008984    APCN01005837    CH940648    EDW61427.1    KPJ18207.1    NWSH01000518    PCG75904.1    GANO01003353    JAB56518.1    GFDG01000227    JAV18572.1    KP774721    ALG36746.1    GFDG01000228    JAV18571.1    AJWK01031388    GDQN01005852    JAT85202.1    GFDF01001031    JAV13053.1    GFDF01001032    JAV13052.1    CH963849    EDW74315.1    CH933808    EDW09066.1    AE013599    AAM71112.1    CM000362    CM002911    EDX08240.1    KMY95843.1    BT122125    AFS34652.1    CH480824    EDW56814.1    PYGN01000908    PSN39452.1    PCG75902.1    KF110680    AHI17295.1    CM000158    EDW91827.1    GAKP01006541    JAC52411.1    GBYB01003502    JAG73269.1   

Proteomes

UP000037510    UP000053268    UP000053240    UP000007151    UP000075885    UP000075880    + More
UP000001070    UP000075900    UP000075902    UP000075882    UP000075886    UP000075903    UP000076407    UP000075840    UP000008792    UP000218220    UP000092461    UP000095300    UP000076408    UP000007798    UP000009192    UP000000803    UP000000304    UP000001292    UP000245037    UP000002282    UP000075884   

Pfam

PF10601   zf-LITAF-like

Interpro

IPR006629   LITAF        + More
IPR037519   LITAF_fam       

ProteinModelPortal

M1SWX5   A0A0L7LPV5   A0A2H1WQ01   A0A194PHT6   A0A194RK47   A0A212EZ36   + More
A0A182PVK7   A0A182JK51   B4J439   A0A2W1BQA8   A0A182RWG6   A0A1E1W5S5   A0A182TNI9   A0A1C7CZ26   A0A194R6U3   A0A182QYK8   A0A182V1S5   A0A182X867   A0A1S4H0Q8   A0A182HZ05   B4LIS4   A0A194RKY7   A0A2A4JW93   U5ES92   A0A1L8EIM5   A0A0N9JT83   A0A1L8EIR6   A0A1B0CVX8   A0A1E1WDX2   A0A1I8P1G7   A0A1L8E2T6   A0A1L8E397   A0A182YMU6   A0A182RWG5   B4MQC6   B4KP90   Q8MME9   B4QHL1   J9Y078   B4I889   A0A182PVK6   A0A2P8Y5C1   A0A2A4JWY3   W5XU98   B4P5J6   A0A182NAP5   A0A034WA13   A0A0C9QS75  

KEGG

101736089    K19363 lipopolysaccharide-induced tumor necrosis factor-alpha factor | (RefSeq) lipopolysaccharide-i

PATHWAY

04142    Lysosome - Bombyx mori (domestic silkworm)

GO

GO:0016021  

PANTHER

PTHR23292  

Length:

134

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.9645

Exp number, first 60 AAs:

0.00352

Total prob of N-in:

0.94790

inside

1  -  87

TMhelix

88  -  110

outside

111  -  134

 

 

Pi

295.25312

Theta

220.054504

Tajima's D

1.070358

CLR

0

CSRT

0.678366081695915

Interpretation

Uncertain