Gene

KWMTBOMO15160  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004933

Annotation

NTF2-like_export_factor_1_[Bombyx_mori]

Location

Bomo_Chr25(+):5962874-5963479      View in EpiBrowser

Full name

NTF2-related export protein      

Alternative Name

p15

Location in the cell

Cytoplasmic   Reliability : 1.703 Extracellular   Reliability : 1.948

CDS

ATGTCTGACGTAGCAGTAAAAAATGTTGATAGTGCTTGTGAGACAGCTGAAGAATTTACTAGAGTGTTTTACAAACAAGTAGACAACAGCCGCCATCTAACCTCAAAATTGTATTTGGATACTGGATTACTTGTTTGGAACGGCAATGGTATCAGTGGCAATGACAAAATACAGAAATTCTTGATGGATTTGCCTGCAAGTAACCATACGCTGAAAAGTTTAGATGCTCAACCAATATCTGATGTCTTGGTTGCAAATAAATTGACGTACCTCATCCAAGCTTGTGGAGATGTTACTTATCAAAACGAAGAAACAAAGAAACCATTTCAGCAAACTTTTCTCATAGTGGCAGTTGATGGGAAATGGAAGATAGCCTCGGATTGTTTCAGACTCCAAGTTCCTTATGGAAATTAA

Protein

MSDVAVKNVDSACETAEEFTRVFYKQVDNSRHLTSKLYLDTGLLVWNGNGISGNDKIQKFLMDLPASNHTLKSLDAQPISDVLVANKLTYLIQACGDVTYQNEETKKPFQQTFLIVAVDGKWKIASDCFRLQVPYGN

Description

Stimulator of protein export for NES-containing proteins (By similarity). Plays a role in the nuclear export of mRNA (PubMed:14729961). Also plays a role in the nuclear export of U1 snRNA, tRNA, and mRNA (By similarity).

Subunit

Forms a complex with RanGAP, Nup358/RanBP2 and sbr/Nxf1.

Keywords

Complete proteome   mRNA transport   Nucleus   Protein transport   Reference proteome   Transport  

Feature

chain  NTF2-related export protein

Uniprot

H9J5Z2   Q1HPZ2   A0A1E1WVF8   A0A0L7LP63   A0A2H1WQ09   S4PLN0   + More
A0A194RLB3   A0A194PGW5   A0A2J7R807   D6WI27   A0A1W4WTG9   A0A034WMQ2   W8C9E6   A0A1Y1K4N1   A0A0K8WKN3   A0A067QPL3   B0XJC1   A0A1Q3G0R0   Q17KF0   A0A023EGI0   N6UQC4   A0A0L0CQB9   R4UL34   A0A1I8NLP4   U5EWI9   A0A1A9WIQ8   E2A3H6   A0A1I8MA70   A0A1B0G7P9   A0A1A9XP25   A0A1B0BNI3   A0A1A9V8C7   A0A084W4P5   A0A1A9ZWE1   A0A182UAJ3   A0A182XL16   Q5TQJ6   V9IIK2   A0A088ATI6   A0A2A3ET63   A0A182UQK6   A0A310SEF3   E9IZI1   A0A195CTU9   A0A158P476   A0A151WLK5   A0A151JR65   F4WIR6   A0A182MYW6   A0A232ERZ8   K7J767   A0A2R7WV06   A0A182L129   A0A182Q5S6   A0A2M4C2W5   A0A2M4C2Z9   A0A0N7Z8W2   A0A182JE74   A0A026W2A5   A0A1B0CAE5   A0A2M3ZK57   T1E8J4   W5JTA9   A0A1L8DGV6   A0A2M4AZI2   A0A069DN27   A0A2M4AZ73   T1IDZ0   A0A182W6T5   A0A182MLX5   B3ME81   A0A336MKH1   A0A182R557   A0A182PCL2   A0A0V0G602   A0A0M5J3X7   B4PA69   Q6XIJ1   A0A182Y3K1   B4L6L3   A0A336M6B3   A0A3B0J3K1   B3NPS6   B4NNM4   A0A0M4E8Y0   B4M7K3   B4JNI5   A0A0J7L4A8   Q293F8   B4GBK9   A0A1W4V013   A0A1B2AKG3   Q9V3H8   B4I8T5   B4QAZ7   A0A1B6EI12   A0A1B6GDK1   A0A1B6HSU5  

Pubmed

19121390    26227816    23622113    26354079    18362917    19820115    + More
25348373    24495485    28004739    24845553    17510324    24945155    23537049    26108605    20798317    25315136    24438588    12364791    14747013    17210077    21282665    21347285    21719571    28648823    20075255    20966253    27129103    24508170    20920257    23761445    26334808    17994087    17550304    14525923    25244985    15632085    10567585    10731132    12537572    12537569    14729961    22936249   

EMBL

BABH01029947    DQ443260    ABF51349.1    GDQN01006987    GDQN01000076    JAT84067.1    + More
JAT90978.1    JTDY01000430    KOB77210.1    ODYU01010192    SOQ55149.1    GAIX01003945    JAA88615.1    KQ460045    KPJ18209.1    KQ459604    KPI92283.1    NEVH01006723    PNF36964.1    KQ971334    EEZ99700.2    GAKP01002126    JAC56826.1    GAMC01002224    JAC04332.1    GEZM01095244    JAV55441.1    GDHF01000695    JAI51619.1    KK853156    KDR10488.1    DS233478    EDS30158.1    GFDL01001662    JAV33383.1    CH477225    EAT47140.1    GAPW01005765    GAPW01005764    JAC07834.1    APGK01021186    KB740293    KB631672    ENN80942.1    ERL85269.1    JRES01000049    KNC34570.1    KC741025    AGM32849.1    GANO01001394    JAB58477.1    GL436428    EFN72040.1    CCAG010016890    JXJN01017413    ATLV01020364    KE525299    KFB45189.1    AAAB01008964    EAA12371.5    JR046098    AEY60134.1    KZ288185    PBC34935.1    KQ760672    OAD59444.1    GL767199    EFZ14021.1    KQ977279    KYN04116.1    ADTU01008694    KQ982959    KYQ48726.1    KQ978615    KYN29856.1    GL888177    EGI65862.1    NNAY01002531    OXU21125.1    AAZX01007534    KK855644    PTY23397.1    AXCN02000817    GGFJ01010493    MBW59634.1    GGFJ01010559    MBW59700.1    GDKW01002235    JAI54360.1    KK107485    EZA50128.1    AJWK01003706    AJWK01003707    GGFM01008148    MBW28899.1    GAMD01002718    JAA98872.1    ADMH02000146    GGFL01004616    ETN67612.1    MBW68794.1    GFDF01008479    JAV05605.1    GGFK01012801    MBW46122.1    GBGD01003426    JAC85463.1    GGFK01012773    MBW46094.1    ACPB03000233    AXCM01012135    CH902619    EDV35476.1    UFQT01001404    SSX30395.1    GECL01002725    JAP03399.1    CP012523    ALC39506.1    CM000158    EDW92395.1    AY231839    AAR09862.1    CH933812    EDW06009.1    UFQT01000450    SSX24493.1    OUUW01000001    SPP75947.1    CH954179    EDV56867.1    CH964282    EDW85963.1    CP012525    ALC43441.1    ALC44574.1    CH940653    EDW62770.1    CH916371    EDV92278.1    LBMM01000867    KMQ97329.1    CM000071    EAL24653.1    CH479181    EDW31304.1    KX531837    ANY27647.1    AF156959    AE013599    AY071250    CH480824    EDW57010.1    CM000362    CM002911    EDX08434.1    KMY96120.1    GECZ01032227    JAS37542.1    GECZ01009241    JAS60528.1    GECU01029952    JAS77754.1   

Proteomes

UP000005204    UP000037510    UP000053240    UP000053268    UP000235965    UP000007266    + More
UP000192223    UP000027135    UP000002320    UP000008820    UP000019118    UP000030742    UP000037069    UP000095300    UP000091820    UP000000311    UP000095301    UP000092444    UP000092443    UP000092460    UP000078200    UP000030765    UP000092445    UP000075902    UP000076407    UP000007062    UP000005203    UP000242457    UP000075903    UP000078542    UP000005205    UP000075809    UP000078492    UP000007755    UP000075884    UP000215335    UP000002358    UP000075882    UP000075886    UP000075880    UP000053097    UP000092461    UP000000673    UP000015103    UP000075920    UP000075883    UP000007801    UP000075900    UP000075885    UP000092553    UP000002282    UP000076408    UP000009192    UP000268350    UP000008711    UP000007798    UP000008792    UP000001070    UP000036403    UP000001819    UP000008744    UP000192221    UP000000803    UP000001292    UP000000304   

PRIDE

H9J5Z2    Q1HPZ2    Q9V3H8   

Pfam

PF02136   NTF2

Interpro

IPR002075   NTF2        + More
IPR032710   NTF2-like_dom_sf       
IPR018222   Nuclear_transport_factor_2_euk       

SUPFAM

SSF54427   SSF54427       

CDD

cd00780  NTF2

ProteinModelPortal

H9J5Z2   Q1HPZ2   A0A1E1WVF8   A0A0L7LP63   A0A2H1WQ09   S4PLN0   + More
A0A194RLB3   A0A194PGW5   A0A2J7R807   D6WI27   A0A1W4WTG9   A0A034WMQ2   W8C9E6   A0A1Y1K4N1   A0A0K8WKN3   A0A067QPL3   B0XJC1   A0A1Q3G0R0   Q17KF0   A0A023EGI0   N6UQC4   A0A0L0CQB9   R4UL34   A0A1I8NLP4   U5EWI9   A0A1A9WIQ8   E2A3H6   A0A1I8MA70   A0A1B0G7P9   A0A1A9XP25   A0A1B0BNI3   A0A1A9V8C7   A0A084W4P5   A0A1A9ZWE1   A0A182UAJ3   A0A182XL16   Q5TQJ6   V9IIK2   A0A088ATI6   A0A2A3ET63   A0A182UQK6   A0A310SEF3   E9IZI1   A0A195CTU9   A0A158P476   A0A151WLK5   A0A151JR65   F4WIR6   A0A182MYW6   A0A232ERZ8   K7J767   A0A2R7WV06   A0A182L129   A0A182Q5S6   A0A2M4C2W5   A0A2M4C2Z9   A0A0N7Z8W2   A0A182JE74   A0A026W2A5   A0A1B0CAE5   A0A2M3ZK57   T1E8J4   W5JTA9   A0A1L8DGV6   A0A2M4AZI2   A0A069DN27   A0A2M4AZ73   T1IDZ0   A0A182W6T5   A0A182MLX5   B3ME81   A0A336MKH1   A0A182R557   A0A182PCL2   A0A0V0G602   A0A0M5J3X7   B4PA69   Q6XIJ1   A0A182Y3K1   B4L6L3   A0A336M6B3   A0A3B0J3K1   B3NPS6   B4NNM4   A0A0M4E8Y0   B4M7K3   B4JNI5   A0A0J7L4A8   Q293F8   B4GBK9   A0A1W4V013   A0A1B2AKG3   Q9V3H8   B4I8T5   B4QAZ7   A0A1B6EI12   A0A1B6GDK1   A0A1B6HSU5  

PDB

6E5U     E-value=3.02329e-24,     Score=270

KEGG

100101167    K14285 NTF2-related export protein 1/2 | (RefSeq) NTF2-like export factor 1

PATHWAY

03008    Ribosome biogenesis in eukaryotes - Bombyx mori (domestic silkworm)
03013    RNA transport - Bombyx mori (domestic silkworm)
03015    mRNA surveillance pathway - Bombyx mori (domestic silkworm)

GO

GO:0006913   GO:0044613   GO:0006606   GO:0016021   GO:0005737   GO:0005654   GO:0005635   GO:0016973   GO:0045824   GO:0050829   GO:0005622   GO:0006810   GO:0005739   GO:0006355   GO:0006391   GO:0031167   GO:0003677   GO:0008408   GO:0005112   GO:0015930  

Subcellular location

Nucleus  

Length:

137

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02331

Exp number, first 60 AAs:

0.02171

Total prob of N-in:

0.31123

outside

1  -  137

 

 

Pi

327.949289

Theta

223.141051

Tajima's D

1.479047

CLR

84.607205

CSRT

0.784110794460277

Interpretation

Uncertain