Silkworm Genome Informatics Database

Gene

KWMTBOMO15159 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004932

Annotation

PREDICTED:_ribosome-binding_protein_1_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr25(+):5937864-5959754 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.554 Nuclear Reliability : 1.141

CDS

ATGGAGCTGCAAGCATTACTGGTTCTGGGAGGATTGGGGGTGGCTGGCATAGCAGTTCTCCTATTGATGGGACTGTTCTCAGCCTCAGGCACTAGCTATGAAGAGGCTATTGCACAACAACGTAAAGCAGCTACTGAGTTGTTGGCATTAGCAGAAAACAAAAGCAAGTCGAAGAAAAATGTGAAGAAGAAGGATAAGAAGCTGGCCAAGAAAGAGAAGAGCAAGGAGAACTCTGGTACAACAGGCAGTGAAATCGACAGTGAGGCCCCAGCTGAGAGTGGTCTAGAAGATGACCCCACTCCACCAACTAAGGGACATGTCGAATTCTCCCCACCTGTTGTTGTTGATGTACCCAGGGATGCACCCCCTAATGTTAAGATACGCAAACGTGGCAAGGATCCTAAGGTAAAGCCGATTCTGTTGAACAAAGAGGATCCGAGTTGCGTTAGTGATCCGAGCACGGTCCCAGTGGCCGCCAATACCACTGTCGCTAACCATTTTGAGGAAATGCATCCAAAAGATGAAATAGAATTGATGCAATCGGCCCTATCAACTGAAAAAGTCGTTGAAAAAGTTGAGGAACCTGTTGACAAGAAGGAAGCAAAGCCTACAAAACCTCAAAAAACTGGCAAAGGTGCTCCTAAAGCAACTTCATCCCCTGAGCTTAAAGAAGAAACAAAAGAAAAAAACAACACTGGGGACGCACCCAAGGAGCAACGTAAAGGTAAAAAAGAGAAGAAGCCTCATGATGAAGCAGCGGAAGTAGCACAACAGGAGATTGTTCCACCATTGAACATACCACAGCCGACTGAGCTAACCACCGAAAAACTTCTGAAACAAGCATTAGTTGTCGCACCTCCTGCGCCGTCGCCTCCAGCTGGCAAGGGGAAGAAGAAAAAACAAGAACCTAATGTCCTCACGCTCATGGTTGGCGACCACGGTGGCGTAAACGTTGGCGAGCTGGTGCGCGTGGTCCGCGAGGCTTCGCTCTCTCGTACAGAGATACAGATCCTGACCGACGCGTTGCTCGACAAACACCATGATCCTCTACCCGAACATTCCGAATGGTCCGAGGGCCCAAATGATCCAGTTCAGAAATTGAAGAAGCAGTTAGCCGACAAAGAAAAGGCGCTGGCCGATGAAGTTGAAGCTTCCCAAGCTTTGCAAGCCAAATTGAAGGAATTACGAACGAGCCTGAACGCAGAGCGCAGCCGGGCGAGCGGCGCCGTGCGCACGCTGGAGGCGGAGCGCGCCCGCCACGAGCAGGCCGCGGCCGCCGCGCGCGTCGACCTGCACACGCACCAGGCGCGCCTGCAGCGGCTCCTCGACGACAACCACCAGCTCGCACAGGAGAAGCTGCACTTGCAATCGCAATTGAATGCAGAAGCGGAAGTTCAAGCTCAACGAGTCCAGATGGAGGTGCACATTAAGAGATTAACAGAGTCGGAGGCGGCGCTGGTGCAGCAGCTGGCGGGGCTGCAGAGCGAGGCGGCCGCGCACGCGCACGACGCCCGCCAGGCGCGCCTCGAGCTGGGCGCCGCCCGCGACGCGCTGCTCATGGCGCAGCAGCACGCCGCCGAACTGGCGCAACAACTGCAGGATGCAAACCGTGCATACACCGAACTAGAGCAGCACTCTCAACAAGAAAGAAGGCAATTACAGGAACGACTCGCTGAGCTTCAAAATGAAGTCCAGAGATTGGCGAATCATGCTCAAACAGTCGAAGCGAACACAGAGAAACTAAAACAAGAAAGTGAAAAACAAAAACAACAGCTATCCAATGAGATCAAAATAATAGGGGAGCAGCTGTCCGCGCGCGAGGCCGAGCTCGCTGAGCTCAAACAGATAAAGGCGGTGCCCGCACAGAACGGTTTGACGGCGGATGACAATGAACAAAAGATAAGCAAATCGGAGTTCGCGAAGGTGGAGAGCGTGGTGGCGGCGCTGCGCAGCGAGCTGGAGTCTGCGCAGGGCAGCAGCCGCGAGCAGCGCGACCAGCTCGAGCGGCTGCGCGACGAGCTGCACCGCCACAAGCACAAGAACGACGAGTTGCGAACTAAAAACTGGAAAGTAATGGAGGCGTTACAGTCTGCCGAAAAGGCTCTCCAGTCGAGAACGGCAAGCGCGTTGCCGGCCCAAGACTCGTTGCGTGAGGCAGTGGCGAAGGCGCAGGAAACGCAACTAGCTGAAGTGGCCGCTGTGCTACGCGCCGCCTGCCCCGCCGCCGCGCCCCATGACCCCTGCGCAGACCTCGCCTGGCTGAGAACCTTCGCCGACAACCTCGGACAATTGCTGCTGCAGCAGAAGGACTTGCTGCTCAAGGAGACTGAGAAGCAGGCGACAGTGGTCACGGCGCCGCCCTCTGACGACCGACTCAAGGAGCTGGCCGATCAGAACGAACACCTCCAAAGTCTCGTCGACAAATACAAGACGATCATAGACGACACGGAGGGCGTGTTAAGCCGGCTACAGCAAAACGTGACGACAGAGGAACAGCGATGGGCGCAACAACTCGCCGACAAACAGCGGGAACTCGATGAACTGCGTCAGAGAACTGTTTCGCAGATGCAGAATAAGATTGATTCGTTGCAAGAAGAACTGGCGCAGGCCAAATCAGCGCGACACAATCACACGTTCGCCGACGCCGAGCGTCTCGCCGAGGAAAGACTGATGGCGGGTTTGTCTGATAAACATACGGATATCAGCAACGGACCGTTACAGCTCGGCTTGGAAAATAAATAG

Protein

MELQALLVLGGLGVAGIAVLLLMGLFSASGTSYEEAIAQQRKAATELLALAENKSKSKKNVKKKDKKLAKKEKSKENSGTTGSEIDSEAPAESGLEDDPTPPTKGHVEFSPPVVVDVPRDAPPNVKIRKRGKDPKVKPILLNKEDPSCVSDPSTVPVAANTTVANHFEEMHPKDEIELMQSALSTEKVVEKVEEPVDKKEAKPTKPQKTGKGAPKATSSPELKEETKEKNNTGDAPKEQRKGKKEKKPHDEAAEVAQQEIVPPLNIPQPTELTTEKLLKQALVVAPPAPSPPAGKGKKKKQEPNVLTLMVGDHGGVNVGELVRVVREASLSRTEIQILTDALLDKHHDPLPEHSEWSEGPNDPVQKLKKQLADKEKALADEVEASQALQAKLKELRTSLNAERSRASGAVRTLEAERARHEQAAAAARVDLHTHQARLQRLLDDNHQLAQEKLHLQSQLNAEAEVQAQRVQMEVHIKRLTESEAALVQQLAGLQSEAAAHAHDARQARLELGAARDALLMAQQHAAELAQQLQDANRAYTELEQHSQQERRQLQERLAELQNEVQRLANHAQTVEANTEKLKQESEKQKQQLSNEIKIIGEQLSAREAELAELKQIKAVPAQNGLTADDNEQKISKSEFAKVESVVAALRSELESAQGSSREQRDQLERLRDELHRHKHKNDELRTKNWKVMEALQSAEKALQSRTASALPAQDSLREAVAKAQETQLAEVAAVLRAACPAAAPHDPCADLAWLRTFADNLGQLLLQQKDLLLKETEKQATVVTAPPSDDRLKELADQNEHLQSLVDKYKTIIDDTEGVLSRLQQNVTTEEQRWAQQLADKQRELDELRQRTVSQMQNKIDSLQEELAQAKSARHNHTFADAERLAEERLMAGLSDKHTDISNGPLQLGLENK

Uniprot

H9J5Z1

Pubmed

19121390

EMBL

BABH01029947 BABH01029948

Proteomes

UP000005204

PRIDE

H9J5Z1

Interpro

IPR040248 RRBP1

ProteinModelPortal

H9J5Z1

PDB

4RH7 E-value=0.0358889, Score=90

KEGG

101736224 K14000 ribosome-binding protein 1 | (RefSeq) ribosome-binding protein 1

PATHWAY

04141 Protein processing in endoplasmic reticulum - Bombyx mori (domestic silkworm)

GO

GO:0030176

PANTHER

PTHR18939

Length:

913

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.23018

Exp number, first 60 AAs:

22.22997

Total prob of N-in:

0.99804

POSSIBLE N-term signal

sequence

inside

1 - 4

TMhelix

5 - 27

outside

28 - 913

Pi

238.058332

Theta

197.780312

Tajima's D

0.684386

CLR

0.200133

CSRT

0.571271436428179

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
27530593	RDLDSVPLDSSSLQDLKM	100.00	2e-12
28556443	VMEALQSAEK	100.00	9e-05
31250652	QQMQNKIDSLQEELAQAK	100.00	3e-04
31250652	LLDDNHQLAQEKLHEGVLSR	100.00	3e-04
28556443	LALAENK	100.00	4e-04
28556443	LQQNVTTEEQR	100.00	5e-04
31250652	QQEGVLSRLQQNVTTEEQR	100.00	6e-04
31250652	DEIELMQSALSTEKISK	100.00	8e-04
31250652	LTEMQNKIDSLQEELAQAK	100.00	0.002
31250652	LTEEGVLSR	100.00	0.009

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics