SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15158
Pre Gene Modal
BGIBMGA004984
Annotation
PREDICTED:_uncharacterized_protein_LOC106130000_[Amyelois_transitella]
Location
Bomo_Chr25(-):5924433-5930733      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.797
 

Sequence

CDS
ATGTCGATTCCTCCACTTGTCTGCAGTACACCACCTCCTCCTGAACAATGCGAAGATGAAAAAGATCTTGAAGAATTCGACGTTCAATATAATCTATCTCAGGATGATGAAGAATGTAGTGATTACTATGGACACTATTCATCATATAGTGTCGAAATCTCATCATTAAAACATAATGACTTGCAAGGCAATTCCGTTTTGGAGGATGAAAACACAAAGCAATCTGATATAGTAATAGATTCAAACCCCACTATACAAAATAAAATAAAATATGAAGAAGATACTAACATAGAAGATTTGAATTTACAAATAGATGATGTGGGATCACTCAGTGAACTGAATGATTCAGCTAAAGATTCAGTGAATGATTCAGCTAAGGATCCTGTTGAAGGTAAAGTTGTACATAATTCAGCAAACACAAATGTGAAAAATGAATTTATAAAAAAATTACGTGAAGAGGGTATTAGTACAGGGGAAAATTTTCATTTCATACCTGTTGAAGAAGAAAAGGAAACCACAGATCAACAAGTTGAAATGGTAGAAGATGAAATTATTAGAGACACACTACAGAATGCTCCAATTGAAACAGAAATTGATGATAATTCTGTCATTGACCTTCAACATGGATTAAATAACACTAAATTAGAAAATGATCCAAATGATGATTTTGGTGAATTTGATGATTTCAATTCAAAACAAACTGACAATACATCTGTCATTATTGAGAACTACACCAATCCTTGGGAAACTGAGGAAGTCAACTCAGATTTTGGTACTTTCACAGCAAATTTTGATGACAATCAAAGTCAATTACAAAATACATCCTCGAATTGTGATGATAGCAATTCAGAGTTTGGAGATTTTATAGTGAACCCAAATAATGATAGTCAAACACTAAAATCAAATGAAAGCTGCACGGCATCAGAAAGTAGAGATATTGTTGAAAATATCAGTGACAGTGCCCTTAAAGACTCAAATTCAAATAGTGAAGATGATGATGATGATTTTGGTGATTTCGATGATTTCAAGTCATCGGTCCCTCATGATGGAAATACATTAACCTCACAGCTAGATGATCCAGGCACAGCTGTATTTAATTTGCATTCAAGTGACAGTAGTGTTCCAGTTATAGAGAATATAAATAAAGTATTACAATGTATATTTGAAGATGAAATAGTAAAACCTCAAAATGAAATAAATATTTCTATAGAATCTGTGCTGGGTGAAACATGGGGGCATTTAACAGAAACTGATGTTAGACAGCCTTACATAGTTAATTGGAATCATTCTTTTGGTCAAAAAACCCTATTAAGGGCATTATGCATTGATTCCAGAAATATTCTTTTTGGTCACAAGTGGAATCACAGTATGCCCAAATATGCAGCGAACTTAGGAGCAGCTCCTCTACAACCGCAGAAGTCTACATCATCATCAGTATTATCTCCCAATGAAGATGTCCCCAATGAGAAGTCTACAAGTAAAAGCACTCCATGGGTGGATCCGGTTGAAGGACAACAGTCTTGCAAGACTGAAAACGTAAGAACAACTCCTGAAAATCGACCTACTGACTTGCATGTGTTTGACGCTATAGCAACGACAAAAGCTGAAAAGATATATTCAAGCACTATTAATGTGCAACCAATACGACAGATAAGTTTACCGGACACACATATATTTACACCGACCGATTCAGAAATACCTCGATCGAAAACAATACATTACGACAGTCAGCCAACAGTTCTTATACCTCAAACGACTGAAAATAAACATGAAGCTATTGCAGAGAAGTTTACAGAGTGTTCTGTATCACGTTCATCTAATCACAAATCTGATGATGACGACGAGTACTGGGAATTTCAAGATTTTAAAAGTACTCCATGTGCCACTAATTCAACAGCAGAAAGAAGTCAAACAATACAACAAAATAATTCAAATCCACCTAACATGGCTTCAGAGAGTTCCGTTTCGCAGACTGTAACATATCAGACCCAAATATTACAACCGATTAAAATGGAACCCATATTTCCCACCCTAAACTGGCCAGATCCTGGGGAGGTGAAAGAAGTATTTAATGATTTTGCAGAGTTCGCTTCAAGCTCTTCATGGAGTGGTAACCAAACTTCAAACCAACTAGAAATTAAAATTGATTCGTCAGTAAACGATTCTATTCAAAAACCTTTAAAAGAAGATTTAACGCTAAATAGTGAATCAGTAACTTTTAGTAACACTGATGACGACTTCGATACATTCCAATCAGCATTACCAACACAAGTTCCGGCCAAGAGTCTAACGAATTGTAAAGATATTAATATTAAAAATACAGCTCACAATATGGTTCAAGACGTAAACTTTGAATGTGATTTTCCTAAAATTAGAAGCGATAACCCAAACACGTATTCATTGTACAACTCAACAGAATCAAACAATGCAAACGACAGCGAAACTGTGTTTGGAACAGGATCTAAAACAAAGGATGTTTCGAATAATTTTATGGCGGTGAACCCTATCATCCACAGTAATATCTTACAACCGACATCGATTGTTCCTGTTTTTTCGCCTCCGATAGCTCAACAAAGCACTGGGCAAATTTTGCAACCCCTAACTTTAGAAAGCTTCTCGCAAATCAATTGGCCCAACCCGGGTATAGATTTGCAGGATCTGTCAAGATTTAATCCCGTTGAAACGTTACATTCCTTAAAAACAGACTTGAGCGTGAACCCGAACAAGAGCTCACCTAGTCACAGTATTAAAACAACCGTTAACAATTTAACAGCAGAGGACGATGTTTGGGGCGAATTCGTATCGGGTAAGCCACAGGTTTCCGCCAAAAAGCACACAGTGGACGAGGACGAGTGGTCGGAATTCGTTTCGAGTCCTTCTGTAAAACCACAGAACGGTCTAAGCACAATAAGCCTAAACGTTCACACTAATTTAAATTCCCAGAAAAGTACCAATAAATTTATCGCGAGAAAAAGTGAAATACCACTTGATATTCCAGGTTTAAATTATATTACCCCCAAGTCCAATAATTTAAAGACACACACTGAGAAGCATTTCCAAAATTTATAA
Protein
MSIPPLVCSTPPPPEQCEDEKDLEEFDVQYNLSQDDEECSDYYGHYSSYSVEISSLKHNDLQGNSVLEDENTKQSDIVIDSNPTIQNKIKYEEDTNIEDLNLQIDDVGSLSELNDSAKDSVNDSAKDPVEGKVVHNSANTNVKNEFIKKLREEGISTGENFHFIPVEEEKETTDQQVEMVEDEIIRDTLQNAPIETEIDDNSVIDLQHGLNNTKLENDPNDDFGEFDDFNSKQTDNTSVIIENYTNPWETEEVNSDFGTFTANFDDNQSQLQNTSSNCDDSNSEFGDFIVNPNNDSQTLKSNESCTASESRDIVENISDSALKDSNSNSEDDDDDFGDFDDFKSSVPHDGNTLTSQLDDPGTAVFNLHSSDSSVPVIENINKVLQCIFEDEIVKPQNEINISIESVLGETWGHLTETDVRQPYIVNWNHSFGQKTLLRALCIDSRNILFGHKWNHSMPKYAANLGAAPLQPQKSTSSSVLSPNEDVPNEKSTSKSTPWVDPVEGQQSCKTENVRTTPENRPTDLHVFDAIATTKAEKIYSSTINVQPIRQISLPDTHIFTPTDSEIPRSKTIHYDSQPTVLIPQTTENKHEAIAEKFTECSVSRSSNHKSDDDDEYWEFQDFKSTPCATNSTAERSQTIQQNNSNPPNMASESSVSQTVTYQTQILQPIKMEPIFPTLNWPDPGEVKEVFNDFAEFASSSSWSGNQTSNQLEIKIDSSVNDSIQKPLKEDLTLNSESVTFSNTDDDFDTFQSALPTQVPAKSLTNCKDINIKNTAHNMVQDVNFECDFPKIRSDNPNTYSLYNSTESNNANDSETVFGTGSKTKDVSNNFMAVNPIIHSNILQPTSIVPVFSPPIAQQSTGQILQPLTLESFSQINWPNPGIDLQDLSRFNPVETLHSLKTDLSVNPNKSSPSHSIKTTVNNLTAEDDVWGEFVSGKPQVSAKKHTVDEDEWSEFVSSPSVKPQNGLSTISLNVHTNLNSQKSTNKFIARKSEIPLDIPGLNYITPKSNNLKTHTEKHFQNL

Summary

Uniprot
H9J643   A0A2H1WX13   A0A194RQA9   A0A194PFW9   A0A1E1WIX3   A0A1E1WUZ4   + More
A0A212FE57  
Pubmed
19121390    26354079    22118469   
EMBL
BABH01029951    BABH01029952    ODYU01011303    SOQ56954.1    KQ460045    KPJ18211.1    + More
KQ459604    KPI92281.1    GDQN01004166    JAT86888.1    GDQN01000211    JAT90843.1    AGBW02008977    OWR52014.1   
Proteomes
UP000005204    UP000053240    UP000053268    UP000007151   
PRIDE
H9J643   
Pfam
PF15045   Clathrin_bdg
Interpro
IPR029205   Clathrin-bd       
ProteinModelPortal
H9J643   A0A2H1WX13   A0A194RQA9   A0A194PFW9   A0A1E1WIX3   A0A1E1WUZ4   + More
A0A212FE57  

Ontologies

KEGG
101745223    no KO assigned | (RefSeq) uncharacterized LOC101745223
GO

Topology

Length:
1022
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00015
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00000
outside
1  -  1022
 
 

Population Genetic Test Statistics

Pi
159.620169
Theta
172.272542
Tajima's D
-0.52262
CLR
202.437522
CSRT
0.235788210589471
Interpretation
Uncertain
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