SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15136
Pre Gene Modal
BGIBMGA004988
Annotation
PREDICTED:_4-coumarate--CoA_ligase_1-like_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 2.248
 

Sequence

CDS
ATGACAACCGTGCATAACAACATCGTATCAGGTCCAGAAGAAAGGCCCATTCCAGCTCATTTATCATTTGGTCAATATTTGTTTGATCAACTAAAAAAAGGTGGAGACCGTGCAGCGCTGGTGAGTGCAGAAACTGGAGAATCTAAAAGTTACAATTTTTTTTTACAAAATAGTGTTAATCTAGCACTGACTCTCCAAGAATTGGGATTAAAGAAAGGTGATGTAGTCTCCCTAAGCAGTGAAAACCGATTTGAATTTATTGTAACTTCCCTAGCCGTTATATACTGCGGAGGTGTTCTCTCTACACTTAATATAACATATTCACCAGGTGAAATTATTCATATTCTTAACATAACAAAGCCTAAGTTTGTATTTACTTCGCCAATCACAGCTCAGAATGTGTATGATAGTTGTAAAGATCTATCATATGTGAAACACATCATTACATTTGGAGACTTTGATGTAATCCCAGGCCTTATGTACAATGACTTAATGAAGAAGGAACATAATAATGTGGAAGATTTCTCATTAGTTGATGTAAATGGAGTCGAGGATACTGTTGCAGTCATGTGCTCATCAGGCACAACCGGCTTGCCTAAGGGTGTTATGCTCACACATGTCAACTTTCTGACATTATGTGCTCATTATAAGTATTATTTTGATTCTGTGCAAGAGAAGAAGAATGTTCCAATAGTGACTGGTTTAGCACTGATACCTTGGTTCCATGCATACGGTTTCATAACTACATTTGCTCTAATGGCAATGAAAATCAGAATTGTCTTTCTAATTCGGTTTGAGGGTGAAAAGTTTTTGGAAACAATTCAAAATTATAAGATAAACATGACCACAATTGTACCTCCATTGGCAGTTTTCCTAGCAAAACATCCACTGGTACTTAAATATGATTTGTCTTCTTTGCATGAAGTGTGGTGTGGAGCCGCTCCACTTTCAAGTGAAATACAAAAAGCTGTCACCAAAAGGACGGGTATTGACTTCATTAAACAGGGTTATGGCTTAACCGAGGCAACAATGGCTTGTTGTGTTGATTTAACCAGTGGTGAAAAAGTAGGATCATGTGGTACACCTGCCCCTGGCATGAAAATTAAGGTTCTAGACATAGAGAGTGGAGAGAAATTAGGTGTGGAGCAAGAAGGCGAATTATGGATCAAGACGCCGTTACGCATGAAGGGATACATGGGCGACAAAGCTGCGAGCGACGCCCTGTTCGATGGCGAAGGCTACGTCAGGACTGGCGACATTGGATACTATGACAAAGATGGATTTTTTTATATTGTCGATAGGTTAAAAGAACTTATCAAATATAAGGGATTCCAGGTAGCTCCGGCTGAATTGGAGGCCTTATTGCTACAACATAGCGGAGTCGCCGACGCCGGTGTAGTGGGTCTACCGGACGAGCTCGCGGGAGAACTGCCCATTGCTTTCGTTGTGCCACAGCCTAACTCAAACGTGACCGAGAAGGAGCTAATAGAATATGTTGCTTCAAAGCTATCACCAGCCAAACATTTAAGAGGAGGTGTAATATTTATCAACGAAATACCAAAAAATGCTTCAGGGAAAATACTGCGTCGTGAGCTGAGGACCATGTTAAGTAAGCAAAAGAGCAAACTGTAA
Protein
MTTVHNNIVSGPEERPIPAHLSFGQYLFDQLKKGGDRAALVSAETGESKSYNFFLQNSVNLALTLQELGLKKGDVVSLSSENRFEFIVTSLAVIYCGGVLSTLNITYSPGEIIHILNITKPKFVFTSPITAQNVYDSCKDLSYVKHIITFGDFDVIPGLMYNDLMKKEHNNVEDFSLVDVNGVEDTVAVMCSSGTTGLPKGVMLTHVNFLTLCAHYKYYFDSVQEKKNVPIVTGLALIPWFHAYGFITTFALMAMKIRIVFLIRFEGEKFLETIQNYKINMTTIVPPLAVFLAKHPLVLKYDLSSLHEVWCGAAPLSSEIQKAVTKRTGIDFIKQGYGLTEATMACCVDLTSGEKVGSCGTPAPGMKIKVLDIESGEKLGVEQEGELWIKTPLRMKGYMGDKAASDALFDGEGYVRTGDIGYYDKDGFFYIVDRLKELIKYKGFQVAPAELEALLLQHSGVADAGVVGLPDELAGELPIAFVVPQPNSNVTEKELIEYVASKLSPAKHLRGGVIFINEIPKNASGKILRRELRTMLSKQKSKL

Summary

EMBL
NWSH01001030    PCG73033.1    ODYU01009511    SOQ54004.1    AGBW02012531    OWR44889.1    + More
KQ459604    KPI92263.1    KQ460045    KPJ18230.1    RSAL01000053    RVE50074.1    PCG73036.1    RVE50075.1    NEVH01013241    PNF29548.1    AB353886    BAF96580.1    OUUW01000007    SPP82704.1    AE014297    AY060906    AY121681    AAF56245.1    AAL28454.1    AAM52008.1    CH479179    EDW24419.1    CM000070    EAL27960.1    KRT00363.1    GAKP01004796    JAC54156.1    KA645541    AFP60170.1    CH940656    EDW58602.1    KRF78360.1    CM000364    EDX14173.1    KK852730    KDR17523.1    GFDG01002537    JAV16262.1    CH916369    EDV93039.1    CM000160    EDW98995.1    GFDG01002539    JAV16260.1    CH954182    EDV53905.1    EDV93037.1    GFDG01002538    JAV16261.1    PYGN01000822    PSN40352.1    GFDF01002419    JAV11665.1    DS235751    EEB16371.1    GDHF01022852    GDHF01016358    GDHF01005766    JAI29462.1    JAI35956.1    JAI46548.1    GBXI01007236    JAD07056.1    GFDF01002420    JAV11664.1    GAMC01014530    GAMC01014529    JAB92025.1    GGFK01007847    MBW41168.1    GGFK01007825    MBW41146.1    KQ459593    KPI96565.1    CH933806    EDW14270.1    CP012526    ALC45981.1    ATLV01021336    KE525316    KFB46347.1    KQ460890    KPJ10987.1    ADMH02001214    ETN63630.1    AB098616    BAE95690.1    GFDF01002635    JAV11449.1    CH902617    EDV44260.1    KPU80729.1    APCN01008266    AAAB01008961    EAA11995.3    CH964272    EDW84131.1    GFDF01002634    JAV11450.1    JRES01000028    KNC34816.1    GGFM01004391    MBW25142.1    KPI96566.1    AB251887    BAQ25864.1    KPJ10988.1    GL438029    EFN69681.1    JXJN01015468    AB251886    BAQ25863.1    KQ977649    KYN00718.1    GGFJ01003984    MBW53125.1    KQ434809    KZC06219.1    KPI92264.1    AGBW02008380    OWR53544.1    CCAG010000200    EZ423090    ADD19366.1    NWSH01000380    PCG76826.1    JN127350    AET05796.1    GFDL01007475    JAV27570.1    GANO01000766    JAB59105.1    AK403861    BAM19986.1    KQ971316    EEZ98794.1    AXCM01004086    DS231865    EDS40370.1    PNF29542.1    KPI96568.1    AB479114    BAI66602.1    KPI96571.1    GL888406    EGI61513.1    AB255748    BAF34360.1    BABH01007891    AXCN02000090    KPJ10990.1    LBMM01003413    KMQ93562.1   
Pfam
PF13193   AMP-binding_C        + More
PF00501   AMP-binding
Interpro
IPR025110   AMP-bd_C        + More
IPR020845   AMP-binding_CS       
IPR000873   AMP-dep_Synth/Lig       
IPR042099   AMP-dep_Synthh-like_sf       
IPR027380   Luciferase-like_N_sf       
Gene 3D
PDB
6AC3     E-value=5.09202e-111,     Score=1027

Ontologies

Topology

Length:
543
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
42.1325700000002
Exp number, first 60 AAs:
0.03534
Total prob of N-in:
0.59155
inside
1  -  230
TMhelix
231  -  253
outside
254  -  543
 
 

Population Genetic Test Statistics

Pi
235.641964
Theta
177.044077
Tajima's D
1.00316
CLR
0.214737
CSRT
0.658567071646418
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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