Gene

KWMTBOMO15136

Pre Gene Modal

BGIBMGA004988

Annotation

PREDICTED:_4-coumarate--CoA_ligase_1-like_[Bombyx_mori]

Location

Bomo_Chr25(-):5682405-5689514      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.248

CDS

ATGACAACCGTGCATAACAACATCGTATCAGGTCCAGAAGAAAGGCCCATTCCAGCTCATTTATCATTTGGTCAATATTTGTTTGATCAACTAAAAAAAGGTGGAGACCGTGCAGCGCTGGTGAGTGCAGAAACTGGAGAATCTAAAAGTTACAATTTTTTTTTACAAAATAGTGTTAATCTAGCACTGACTCTCCAAGAATTGGGATTAAAGAAAGGTGATGTAGTCTCCCTAAGCAGTGAAAACCGATTTGAATTTATTGTAACTTCCCTAGCCGTTATATACTGCGGAGGTGTTCTCTCTACACTTAATATAACATATTCACCAGGTGAAATTATTCATATTCTTAACATAACAAAGCCTAAGTTTGTATTTACTTCGCCAATCACAGCTCAGAATGTGTATGATAGTTGTAAAGATCTATCATATGTGAAACACATCATTACATTTGGAGACTTTGATGTAATCCCAGGCCTTATGTACAATGACTTAATGAAGAAGGAACATAATAATGTGGAAGATTTCTCATTAGTTGATGTAAATGGAGTCGAGGATACTGTTGCAGTCATGTGCTCATCAGGCACAACCGGCTTGCCTAAGGGTGTTATGCTCACACATGTCAACTTTCTGACATTATGTGCTCATTATAAGTATTATTTTGATTCTGTGCAAGAGAAGAAGAATGTTCCAATAGTGACTGGTTTAGCACTGATACCTTGGTTCCATGCATACGGTTTCATAACTACATTTGCTCTAATGGCAATGAAAATCAGAATTGTCTTTCTAATTCGGTTTGAGGGTGAAAAGTTTTTGGAAACAATTCAAAATTATAAGATAAACATGACCACAATTGTACCTCCATTGGCAGTTTTCCTAGCAAAACATCCACTGGTACTTAAATATGATTTGTCTTCTTTGCATGAAGTGTGGTGTGGAGCCGCTCCACTTTCAAGTGAAATACAAAAAGCTGTCACCAAAAGGACGGGTATTGACTTCATTAAACAGGGTTATGGCTTAACCGAGGCAACAATGGCTTGTTGTGTTGATTTAACCAGTGGTGAAAAAGTAGGATCATGTGGTACACCTGCCCCTGGCATGAAAATTAAGGTTCTAGACATAGAGAGTGGAGAGAAATTAGGTGTGGAGCAAGAAGGCGAATTATGGATCAAGACGCCGTTACGCATGAAGGGATACATGGGCGACAAAGCTGCGAGCGACGCCCTGTTCGATGGCGAAGGCTACGTCAGGACTGGCGACATTGGATACTATGACAAAGATGGATTTTTTTATATTGTCGATAGGTTAAAAGAACTTATCAAATATAAGGGATTCCAGGTAGCTCCGGCTGAATTGGAGGCCTTATTGCTACAACATAGCGGAGTCGCCGACGCCGGTGTAGTGGGTCTACCGGACGAGCTCGCGGGAGAACTGCCCATTGCTTTCGTTGTGCCACAGCCTAACTCAAACGTGACCGAGAAGGAGCTAATAGAATATGTTGCTTCAAAGCTATCACCAGCCAAACATTTAAGAGGAGGTGTAATATTTATCAACGAAATACCAAAAAATGCTTCAGGGAAAATACTGCGTCGTGAGCTGAGGACCATGTTAAGTAAGCAAAAGAGCAAACTGTAA

Protein

MTTVHNNIVSGPEERPIPAHLSFGQYLFDQLKKGGDRAALVSAETGESKSYNFFLQNSVNLALTLQELGLKKGDVVSLSSENRFEFIVTSLAVIYCGGVLSTLNITYSPGEIIHILNITKPKFVFTSPITAQNVYDSCKDLSYVKHIITFGDFDVIPGLMYNDLMKKEHNNVEDFSLVDVNGVEDTVAVMCSSGTTGLPKGVMLTHVNFLTLCAHYKYYFDSVQEKKNVPIVTGLALIPWFHAYGFITTFALMAMKIRIVFLIRFEGEKFLETIQNYKINMTTIVPPLAVFLAKHPLVLKYDLSSLHEVWCGAAPLSSEIQKAVTKRTGIDFIKQGYGLTEATMACCVDLTSGEKVGSCGTPAPGMKIKVLDIESGEKLGVEQEGELWIKTPLRMKGYMGDKAASDALFDGEGYVRTGDIGYYDKDGFFYIVDRLKELIKYKGFQVAPAELEALLLQHSGVADAGVVGLPDELAGELPIAFVVPQPNSNVTEKELIEYVASKLSPAKHLRGGVIFINEIPKNASGKILRRELRTMLSKQKSKL

Uniprot

A0A2A4JNM0   A0A2H1WNI5   A0A212ETT6   A0A194PGU6   A0A194RLN8   A0A3S2PFN8   + More
A0A2A4JMM7   A0A3S2NFX7   A0A2J7QLX8   A9ZPM4   A0A3B0JK27   Q9VCC6   A0A1W4V678   B4G408   Q298J5   A0A034WF13   A0A182YEP9   T1P9V4   B4MBY1   B4QSH4   A0A1I8N0L6   A0A067R342   A0A1L8ECA8   B4JIF8   B4PL10   K7J1G6   A0A1L8EBZ5   B3P785   B4JIF6   A0A1L8EBY4   A0A1I8PLP9   A0A1I8PLT1   A0A2P8Y7W7   A0A182VPX3   A0A1L8DZF9   E0VSL5   A0A182SUG3   A0A0K8VAT3   A0A0A1X815   A0A182RE74   A0A1L8DYZ5   W8AT94   A0A182F8R8   A0A2M4AKM3   A0A2M4AK32   A0A194PZH5   B4K7E6   A0A0M5JC90   A0A084W803   A0A194QZV5   W5JL40   Q1ET69   A0A182X4T0   A0A1L8DYF7   B3M0L3   A0A182I9E2   Q7Q503   A0A182LQ72   B4NKS0   A0A1L8DYB2   A0A0L0CRE8   A0A2M3Z9G4   A0A182JWZ3   A0A194PT23   A0A1A9XI15   A0A0C6DRW5   A0A194QZM0   A0A182PST3   E2AA43   A0A1B0BJN6   A0A0C6E621   A0A195CJ24   A0A2M4BJ94   A0A154P2Q1   A0A1A9ZLB4   A0A194PHR8   A0A212FII9   D3TNT8   A0A2A4JYH7   G8GE17   A0A1Q3FIY4   U5EXU9   A0A1I8JUI2   I4DPZ6   D6WCC5   A0A1A9VQZ3   A0A182MLJ2   B0W9Q1   A0A2J7QLT9   A0A194PUB9   D2KV87   A0A194PT28   A0A1Y9IV15   F4WWH1   Q05KC0   H9J2F6   A0A182QSE0   A0A194R162   A0A0J7KT57  

Pubmed

22118469    26354079    17996401    10731132    12537568    12537572    + More
12537573    12537574    16110336    17569856    17569867    26109357    26109356    17994087    15632085    23185243    25348373    25244985    18057021    25315136    24845553    17550304    20075255    29403074    20566863    25830018    24495485    24438588    20920257    23761445    16756548    12364791    14747013    17210077    20966253    26108605    20798317    20353571    22651552    18362917    19820115    20004235    21719571    19121390   

EMBL

NWSH01001030    PCG73033.1    ODYU01009511    SOQ54004.1    AGBW02012531    OWR44889.1    + More
KQ459604    KPI92263.1    KQ460045    KPJ18230.1    RSAL01000053    RVE50074.1    PCG73036.1    RVE50075.1    NEVH01013241    PNF29548.1    AB353886    BAF96580.1    OUUW01000007    SPP82704.1    AE014297    AY060906    AY121681    AAF56245.1    AAL28454.1    AAM52008.1    CH479179    EDW24419.1    CM000070    EAL27960.1    KRT00363.1    GAKP01004796    JAC54156.1    KA645541    AFP60170.1    CH940656    EDW58602.1    KRF78360.1    CM000364    EDX14173.1    KK852730    KDR17523.1    GFDG01002537    JAV16262.1    CH916369    EDV93039.1    CM000160    EDW98995.1    GFDG01002539    JAV16260.1    CH954182    EDV53905.1    EDV93037.1    GFDG01002538    JAV16261.1    PYGN01000822    PSN40352.1    GFDF01002419    JAV11665.1    DS235751    EEB16371.1    GDHF01022852    GDHF01016358    GDHF01005766    JAI29462.1    JAI35956.1    JAI46548.1    GBXI01007236    JAD07056.1    GFDF01002420    JAV11664.1    GAMC01014530    GAMC01014529    JAB92025.1    GGFK01007847    MBW41168.1    GGFK01007825    MBW41146.1    KQ459593    KPI96565.1    CH933806    EDW14270.1    CP012526    ALC45981.1    ATLV01021336    KE525316    KFB46347.1    KQ460890    KPJ10987.1    ADMH02001214    ETN63630.1    AB098616    BAE95690.1    GFDF01002635    JAV11449.1    CH902617    EDV44260.1    KPU80729.1    APCN01008266    AAAB01008961    EAA11995.3    CH964272    EDW84131.1    GFDF01002634    JAV11450.1    JRES01000028    KNC34816.1    GGFM01004391    MBW25142.1    KPI96566.1    AB251887    BAQ25864.1    KPJ10988.1    GL438029    EFN69681.1    JXJN01015468    AB251886    BAQ25863.1    KQ977649    KYN00718.1    GGFJ01003984    MBW53125.1    KQ434809    KZC06219.1    KPI92264.1    AGBW02008380    OWR53544.1    CCAG010000200    EZ423090    ADD19366.1    NWSH01000380    PCG76826.1    JN127350    AET05796.1    GFDL01007475    JAV27570.1    GANO01000766    JAB59105.1    AK403861    BAM19986.1    KQ971316    EEZ98794.1    AXCM01004086    DS231865    EDS40370.1    PNF29542.1    KPI96568.1    AB479114    BAI66602.1    KPI96571.1    GL888406    EGI61513.1    AB255748    BAF34360.1    BABH01007891    AXCN02000090    KPJ10990.1    LBMM01003413    KMQ93562.1   

Proteomes

UP000218220    UP000007151    UP000053268    UP000053240    UP000283053    UP000235965    + More
UP000268350    UP000000803    UP000192221    UP000008744    UP000001819    UP000076408    UP000008792    UP000000304    UP000095301    UP000027135    UP000001070    UP000002282    UP000002358    UP000008711    UP000095300    UP000245037    UP000075920    UP000009046    UP000075901    UP000075900    UP000069272    UP000009192    UP000092553    UP000030765    UP000000673    UP000076407    UP000007801    UP000075840    UP000007062    UP000075882    UP000007798    UP000037069    UP000075881    UP000092443    UP000075885    UP000000311    UP000092460    UP000078542    UP000076502    UP000092445    UP000092444    UP000007266    UP000078200    UP000075883    UP000002320    UP000007755    UP000005204    UP000075886    UP000036403   

PRIDE

Q9VCC6    G8GE17    H9J2F6   

Pfam

PF13193   AMP-binding_C        + More
PF00501   AMP-binding

Interpro

IPR025110   AMP-bd_C        + More
IPR020845   AMP-binding_CS       
IPR000873   AMP-dep_Synth/Lig       
IPR042099   AMP-dep_Synthh-like_sf       
IPR027380   Luciferase-like_N_sf       

Gene 3D

3.40.50.12780     4.10.8.10    

ProteinModelPortal

A0A2A4JNM0   A0A2H1WNI5   A0A212ETT6   A0A194PGU6   A0A194RLN8   A0A3S2PFN8   + More
A0A2A4JMM7   A0A3S2NFX7   A0A2J7QLX8   A9ZPM4   A0A3B0JK27   Q9VCC6   A0A1W4V678   B4G408   Q298J5   A0A034WF13   A0A182YEP9   T1P9V4   B4MBY1   B4QSH4   A0A1I8N0L6   A0A067R342   A0A1L8ECA8   B4JIF8   B4PL10   K7J1G6   A0A1L8EBZ5   B3P785   B4JIF6   A0A1L8EBY4   A0A1I8PLP9   A0A1I8PLT1   A0A2P8Y7W7   A0A182VPX3   A0A1L8DZF9   E0VSL5   A0A182SUG3   A0A0K8VAT3   A0A0A1X815   A0A182RE74   A0A1L8DYZ5   W8AT94   A0A182F8R8   A0A2M4AKM3   A0A2M4AK32   A0A194PZH5   B4K7E6   A0A0M5JC90   A0A084W803   A0A194QZV5   W5JL40   Q1ET69   A0A182X4T0   A0A1L8DYF7   B3M0L3   A0A182I9E2   Q7Q503   A0A182LQ72   B4NKS0   A0A1L8DYB2   A0A0L0CRE8   A0A2M3Z9G4   A0A182JWZ3   A0A194PT23   A0A1A9XI15   A0A0C6DRW5   A0A194QZM0   A0A182PST3   E2AA43   A0A1B0BJN6   A0A0C6E621   A0A195CJ24   A0A2M4BJ94   A0A154P2Q1   A0A1A9ZLB4   A0A194PHR8   A0A212FII9   D3TNT8   A0A2A4JYH7   G8GE17   A0A1Q3FIY4   U5EXU9   A0A1I8JUI2   I4DPZ6   D6WCC5   A0A1A9VQZ3   A0A182MLJ2   B0W9Q1   A0A2J7QLT9   A0A194PUB9   D2KV87   A0A194PT28   A0A1Y9IV15   F4WWH1   Q05KC0   H9J2F6   A0A182QSE0   A0A194R162   A0A0J7KT57  

PDB

6AC3     E-value=5.09202e-111,     Score=1027

KEGG

101738385    no KO assigned | (RefSeq) 4-coumarate--CoA ligase 1-like

GO

GO:0003824   GO:0016021   GO:0004497   GO:0016405   GO:0001676   GO:0004321   GO:0015645   GO:0006637   GO:0006633   GO:0055114   GO:0046949   GO:0005777   GO:0004467   GO:0016874   GO:0047077   GO:0008152   GO:0003677   GO:0046983   GO:0005525   GO:0000166   GO:0008408   GO:0005112   GO:0015930  

Length:

543

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

42.1325700000002

Exp number, first 60 AAs:

0.03534

Total prob of N-in:

0.59155

inside

1  -  230

TMhelix

231  -  253

outside

254  -  543

 

 

Pi

235.641964

Theta

177.044077

Tajima's D

1.00316

CLR

0.214737

CSRT

0.658567071646418

Interpretation

Uncertain