SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15134
Pre Gene Modal
BGIBMGA004916
Annotation
PREDICTED:_uncharacterized_protein_LOC106126398_isoform_X3_[Papilio_xuthus]
Location in the cell
Nuclear   Reliability : 3.178
 

Sequence

CDS
ATGAAAAAATATTTAAAATGCAAGTTTGGGGAGGAGAGTCACTCGCCCCAATATCATGCAGTAACAGAATTCCCGGAAGCAGAAGCTATGGAAAAGAAGGGAAATGAGCAGACCGAGAAGGTTGACCCACCTTTACCTAACCGTCCACCGCTGCCGCCGCCGGATCCACTCCTTGCAAATTTAAAAAAGGAAATCGTCAATGAAGAATACATAGATACATCATCAATAACCATAAATATCAAAACAGATCCAACCGAGAATGACGGAAAGCCTAATGACGTCGAAGAGACTATGTGTCGTAATTTTGTGCGTAACACTTGCAATCGTGGTGCGTCATGTAGATATCTCCACAAAATAATACATTCCCAACTTAAAGGAGTTTACAGATTCTGTATTGATTTTGAAAATAAAAAGTGCACACGTGCAGAATGTTCATATGCTCACGCCACAGTGCACGAGAAAGAACATTTCTTCAGAACGGGCTATTTACCACCAAATACATTGAGCCATATTAAGAAAAAAACAGTCCTACCTCAAGCTAAAACCAAAGCGACGACACCAAACATGTCGGCGCCTTATAGTGCTGATCAAACATTTCCACTGGGTATTAATACTGTTCCCGCCTACCCAAATACATCCAATATGAAGATGATCCAAAATCCATATCCCGGTATGATCTCACCTACGACGAGGCAGTGGCTAGGAATGGAGGAGAAAACATCAGAGCTGTCGGCGAACTATAGCGGCACTACGTACCCCCATAGTGCTAGCACCATCCCGATGTATACAAACACGCCGAATGTGAACGTGATGCAAAACCCATACGCCAGGCAATGGCCAGAAACTGAAGACAAATCGCCGACCGTGATGCACAATCCATACGCCACTGTGATGTCTCCTACGAAGAGGCCGTGGACAGAAATGGAAGAGCCCATGATACAACCCACACGCGAGTACGCAGAGTACGCTGAAGCGACTGAATCTAAGAAATGCAGAAACTGTGATGTCAATGAGTTCAGGTTGCAGCATAATAAAAACAAAATCATAAAAATGATGGAAGACGCGGATGATCTGAACAAGCGTGTCGGGCAAATAACTAAGAAGAACAATAAACTAAACGAAGTTCTAGTTCTGCTCATTGAAGCTGTGGCTGAACACTGCAACCCAGAGGCTAGCGATGAAATGAGTTTCGAGCATAACGCAGCACAAATTATGAAGAATGTAATGGCTGCAGAACGCGGAGAGTCTAGTATGTCACCGGAAGACATGTTCTATGATTAA
Protein
MKKYLKCKFGEESHSPQYHAVTEFPEAEAMEKKGNEQTEKVDPPLPNRPPLPPPDPLLANLKKEIVNEEYIDTSSITINIKTDPTENDGKPNDVEETMCRNFVRNTCNRGASCRYLHKIIHSQLKGVYRFCIDFENKKCTRAECSYAHATVHEKEHFFRTGYLPPNTLSHIKKKTVLPQAKTKATTPNMSAPYSADQTFPLGINTVPAYPNTSNMKMIQNPYPGMISPTTRQWLGMEEKTSELSANYSGTTYPHSASTIPMYTNTPNVNVMQNPYARQWPETEDKSPTVMHNPYATVMSPTKRPWTEMEEPMIQPTREYAEYAEATESKKCRNCDVNEFRLQHNKNKIIKMMEDADDLNKRVGQITKKNNKLNEVLVLLIEAVAEHCNPEASDEMSFEHNAAQIMKNVMAAERGESSMSPEDMFYD

Summary

Uniprot
Interpro
IPR000571   Znf_CCCH       
ProteinModelPortal
PDB
5U6L     E-value=0.02595,     Score=88

Ontologies

Topology

Length:
426
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00039
Exp number, first 60 AAs:
0
Total prob of N-in:
0.01563
outside
1  -  426
 
 

Population Genetic Test Statistics

Pi
338.723085
Theta
211.055594
Tajima's D
1.78366
CLR
0.021667
CSRT
0.84350782460877
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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