Silkworm Genome Informatics Database

Gene

KWMTBOMO15134

Pre Gene Modal

BGIBMGA004916

Annotation

PREDICTED:_uncharacterized_protein_LOC106126398_isoform_X3_[Papilio_xuthus]

Location

Bomo_Chr25(+):5652135-5672216 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.178

CDS

ATGAAAAAATATTTAAAATGCAAGTTTGGGGAGGAGAGTCACTCGCCCCAATATCATGCAGTAACAGAATTCCCGGAAGCAGAAGCTATGGAAAAGAAGGGAAATGAGCAGACCGAGAAGGTTGACCCACCTTTACCTAACCGTCCACCGCTGCCGCCGCCGGATCCACTCCTTGCAAATTTAAAAAAGGAAATCGTCAATGAAGAATACATAGATACATCATCAATAACCATAAATATCAAAACAGATCCAACCGAGAATGACGGAAAGCCTAATGACGTCGAAGAGACTATGTGTCGTAATTTTGTGCGTAACACTTGCAATCGTGGTGCGTCATGTAGATATCTCCACAAAATAATACATTCCCAACTTAAAGGAGTTTACAGATTCTGTATTGATTTTGAAAATAAAAAGTGCACACGTGCAGAATGTTCATATGCTCACGCCACAGTGCACGAGAAAGAACATTTCTTCAGAACGGGCTATTTACCACCAAATACATTGAGCCATATTAAGAAAAAAACAGTCCTACCTCAAGCTAAAACCAAAGCGACGACACCAAACATGTCGGCGCCTTATAGTGCTGATCAAACATTTCCACTGGGTATTAATACTGTTCCCGCCTACCCAAATACATCCAATATGAAGATGATCCAAAATCCATATCCCGGTATGATCTCACCTACGACGAGGCAGTGGCTAGGAATGGAGGAGAAAACATCAGAGCTGTCGGCGAACTATAGCGGCACTACGTACCCCCATAGTGCTAGCACCATCCCGATGTATACAAACACGCCGAATGTGAACGTGATGCAAAACCCATACGCCAGGCAATGGCCAGAAACTGAAGACAAATCGCCGACCGTGATGCACAATCCATACGCCACTGTGATGTCTCCTACGAAGAGGCCGTGGACAGAAATGGAAGAGCCCATGATACAACCCACACGCGAGTACGCAGAGTACGCTGAAGCGACTGAATCTAAGAAATGCAGAAACTGTGATGTCAATGAGTTCAGGTTGCAGCATAATAAAAACAAAATCATAAAAATGATGGAAGACGCGGATGATCTGAACAAGCGTGTCGGGCAAATAACTAAGAAGAACAATAAACTAAACGAAGTTCTAGTTCTGCTCATTGAAGCTGTGGCTGAACACTGCAACCCAGAGGCTAGCGATGAAATGAGTTTCGAGCATAACGCAGCACAAATTATGAAGAATGTAATGGCTGCAGAACGCGGAGAGTCTAGTATGTCACCGGAAGACATGTTCTATGATTAA

Protein

MKKYLKCKFGEESHSPQYHAVTEFPEAEAMEKKGNEQTEKVDPPLPNRPPLPPPDPLLANLKKEIVNEEYIDTSSITINIKTDPTENDGKPNDVEETMCRNFVRNTCNRGASCRYLHKIIHSQLKGVYRFCIDFENKKCTRAECSYAHATVHEKEHFFRTGYLPPNTLSHIKKKTVLPQAKTKATTPNMSAPYSADQTFPLGINTVPAYPNTSNMKMIQNPYPGMISPTTRQWLGMEEKTSELSANYSGTTYPHSASTIPMYTNTPNVNVMQNPYARQWPETEDKSPTVMHNPYATVMSPTKRPWTEMEEPMIQPTREYAEYAEATESKKCRNCDVNEFRLQHNKNKIIKMMEDADDLNKRVGQITKKNNKLNEVLVLLIEAVAEHCNPEASDEMSFEHNAAQIMKNVMAAERGESSMSPEDMFYD

Uniprot

H9J648

Pubmed

19121390

EMBL

BABH01029989 BABH01029990

Proteomes

UP000005204

PRIDE

H9J648

Interpro

IPR000571 Znf_CCCH

ProteinModelPortal

H9J648

PDB

5U6L E-value=0.02595, Score=88

KEGG

101738523 no KO assigned | (RefSeq) uncharacterized LOC101738523

GO

GO:0046872 GO:0003677 GO:0046983 GO:0005525 GO:0000166 GO:0008408 GO:0005112 GO:0015930

Length:

426

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00039

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01563

outside

1 - 426

Pi

338.723085

Theta

211.055594

Tajima's D

1.78366

CLR

0.021667

CSRT

0.84350782460877

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree