Silkworm Genome Informatics Database

Gene

KWMTBOMO15133

Pre Gene Modal

BGIBMGA004989

Annotation

putative_zinc_finger_CCCH-type_containing_10_[Danaus_plexippus]

Location

Bomo_Chr25(-):5636478-5649714 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.681

CDS

ATGAAAAAATACTTAAAATACAAGATCGGGGAGGAGAGTCACTCGCCCCAATATCATGGAGTAGCAGAAATCTCAGAAGCAGAAGCGATGAAAAGAAAGAAACATGAGCAGACAGAGAAGGTTCATCCACCATTACCTAACCGCCCACCGCTGCCGCCGCCGGAACCACTCCTTGCAAATTTCAAAAAGGAAATCAATGATGACGAGGAGACACCTTCAATAACCATAAATATCAAGAAAGATCCAACTGAGAATTATGAAAAGCCTAATGACGTCGAAGAGACCATGTGTCGTAATTTTGTGCGTAACACTTGCAATCGTGGTGCGTCATGTAGATATCTCCACAAAATAATACATTCCCAACTTAAAGGAGTTTACAAATTCTGTATTGATTTTGAAAATAAAAAGTGCACACGTGCAGAATGTTCATATGCTCACGCCACAGTGCACGAGAAAGAACATTTCTTCAGAACGGGCTATTTACCACCAAATACATTGAGCCATATTAAGAAAAAAACAGTCCTACCTCCAGCTAAAACCAAAGAAACATCATCCGAGCTATCGGCGAATTATACCGGCACTACATACCCTCATAGCACCACTTCTGTTCCGATGTACACAAATGCTTCGAATATAAGCATGATGCAAAATCCATACGAGAAGCAATGGCCGGAAATGGAAGACAAATCGTCGCCCGAGATGGCATATTATAGTGGGCATCCATCTTATCCTCACAGTACGAGCACAGGTTACCCGAACGCTCCGCCCAATACGCCTATAGTGCAAAATCCATACGCCACTGTAATGTCTCCTACGAAGAGGCAGTGGACAGAAATGGAAGAACCCGTGAGTCAACCCACGCACGAGTACGCAGAGTACGCTGAAATGGCTGGATCCAAGAAATGCAGAAACTGTGACGTCAACGAGTTCAGATTCCAGCATAACAAAAACAAAATCATGAAAATGATAAAAGACACAGACGACTTGAATCATCGCGTGGGGCAAATAACTAAAAAGAACACTAAATTGAATGAAGTACTTGTGCTGCTCGTCGAAGTTGTGACCGAGCATTGTAACCCGGGCATCACTGACGAAACGAATTTTGATGGAAGTGCAATGGCTGAAGAATCTGAAGAGTCTGACATGTTATCGGGAGACATGAATTATTATTAA

Protein

MKKYLKYKIGEESHSPQYHGVAEISEAEAMKRKKHEQTEKVHPPLPNRPPLPPPEPLLANFKKEINDDEETPSITINIKKDPTENYEKPNDVEETMCRNFVRNTCNRGASCRYLHKIIHSQLKGVYKFCIDFENKKCTRAECSYAHATVHEKEHFFRTGYLPPNTLSHIKKKTVLPPAKTKETSSELSANYTGTTYPHSTTSVPMYTNASNISMMQNPYEKQWPEMEDKSSPEMAYYSGHPSYPHSTSTGYPNAPPNTPIVQNPYATVMSPTKRQWTEMEEPVSQPTHEYAEYAEMAGSKKCRNCDVNEFRFQHNKNKIMKMIKDTDDLNHRVGQITKKNTKLNEVLVLLVEVVTEHCNPGITDETNFDGSAMAEESEESDMLSGDMNYY

Uniprot

H9J648 A0A2W1BLQ4 A0A2A4JE70 A0A1E1WCP4

Pubmed

19121390 28756777

EMBL

BABH01029989 BABH01029990 KZ150006 PZC75211.1 NWSH01001804 PCG70076.1 + More
GDQN01006423 GDQN01001816 JAT84631.1 JAT89238.1

Proteomes

UP000005204 UP000218220

PRIDE

H9J648

Pfam

PF00642 zf-CCCH

Interpro

IPR000571 Znf_CCCH + More
IPR036855 Znf_CCCH_sf

SUPFAM

SSF90229 SSF90229

ProteinModelPortal

H9J648 A0A2W1BLQ4 A0A2A4JE70 A0A1E1WCP4

PDB

5U6L E-value=0.0303408, Score=87

KEGG

101738733 no KO assigned | (RefSeq) uncharacterized LOC101738733

GO

GO:0046872 GO:0003677 GO:0046983 GO:0005525 GO:0000166 GO:0008408 GO:0005112 GO:0015930

Length:

390

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00135

Exp number, first 60 AAs:

0

Total prob of N-in:

0.04241

outside

1 - 390

Pi

182.706223

Theta

171.262075

Tajima's D

0.286935

CLR

0.496152

CSRT

0.451277436128194

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree