Gene

KWMTBOMO15127  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004913

Annotation

PREDICTED:_DNA-directed_RNA_polymerases_I_and_III_subunit_RPAC1_isoform_X1_[Papilio_machaon]

Location

Bomo_Chr25(+):5565715-5568487      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.798

CDS

ATGCCTAAATTCGATGAAAAACCCCGAGTTTTTCTTGAAGAATTCCGTGTTAAGAATGCACCCGAAGATTACGGATTAGACGATGAAACATGGGACTTCAAAAAGTTTGTGAAGAAGTTTAAGATAGTTGTAGTACGAATGGACAATTTCGAAATGGAATTTGACTTGATTGGGATCCAGCCAGCATTTGCGAACGCATTCCGGAGACTCATGTTAAGTGAAGTTCCTAGTATGGCTATTGAAAAAGTAATGATCAAGAACAACACTTCTATAATACAGGATGAAGTTTTAGCACACAGATTAGGATTGATTCCTCTCAAAGCTGATCCAAGATTGTTTGAATATAAATCTGAAGAAGACACGGAAGGAACAGAATTCAACACTTTAGAATTTTCACTAAAAGTAAAATGTACCAATAGCAAGTCACAACCAAAAGATTCATATAGAGCTGAAGATTTGTATGAAAATCATAGTATTTATTCATCCCATATGAAGTGGCATCCAATTGGCAACCAAGCTACAGTTTATAAAGAAGCTGATGTGGGTCCTGTACATAAGGATATTCTTATATCAAAAATGAGACCTGGCCATGAAATAGACCTTCAAATGATTGCCGTGAAGGGCATAGGAAAGGATCATGCAAAATTTTCACCTGTTGCAACAGCTACATACAGATTGCTGCCAGAGGTAACACTGACTCGTGAAGTTTGTGACAGTGAAGCCACACTGTTGCAGAGTTGTTTCTCACCAGGTGTTATTGGTATTGACTCTAAAAACCGAGCATATGTGAAAGATGCAAGATATGATGCATGTAGTCGTAATGTTTATAGATATGACACAATCAAAGATTCAGCAATCCTAAGTAGAGTTCGGGATCATTTCATATTTAATGTGGAATCAGTTGGAGCAATTCCACCTCAGATAATTTTTGTAGAGGCAGTAAAAATTTTAAGAGATAAATGTAGATCTTTTTTGGATGAATTAAATAAATTTAGTTAA

Protein

MPKFDEKPRVFLEEFRVKNAPEDYGLDDETWDFKKFVKKFKIVVVRMDNFEMEFDLIGIQPAFANAFRRLMLSEVPSMAIEKVMIKNNTSIIQDEVLAHRLGLIPLKADPRLFEYKSEEDTEGTEFNTLEFSLKVKCTNSKSQPKDSYRAEDLYENHSIYSSHMKWHPIGNQATVYKEADVGPVHKDILISKMRPGHEIDLQMIAVKGIGKDHAKFSPVATATYRLLPEVTLTREVCDSEATLLQSCFSPGVIGIDSKNRAYVKDARYDACSRNVYRYDTIKDSAILSRVRDHFIFNVESVGAIPPQIIFVEAVKILRDKCRSFLDELNKFS

Uniprot

H9J5X2   A0A2H1W3G1   A0A194RLP3   A0A1E1WII4   A0A2A4JI77   A0A194PHR3   + More
S4NXL6   A0A3S2NKQ5   A0A212ETW7   A0A1I8MS19   Q171Q8   A0A1Q3F6I9   B0W725   B4LUA3   B4N0H9   T1PJ82   B4JB45   B4KGY1   A0A0L0CG52   A0A1I8Q4G0   A0A0M5J3D7   A0A1W4UHS5   A0A1A9WAK6   B3N4C9   Q29L21   B4NW96   A0A084VMR3   B4Q356   Q9VMX3   B3MVL4   A0A1A9X8B4   A0A1B0BZL7   A0A3B0KE55   A0A2M3ZC22   A0A182IB61   W5J4K3   A0A182X4Z9   A0A2M4BTK6   A0A1A9V9Z8   D3TQZ8   A0A2M4BTI1   A0A182KWN0   A0A182U6A7   A0A2M4AR08   W8BX95   A0A0A1WR47   A0A1B0AIS6   A0A182PUH7   A0A182NB71   A0A2J7QRX0   A0A182JUD4   A0A0K8VU50   A0A182F2T0   A0A034WH15   A0A1B0G470   A0A182J1L4   A0A2M4AR67   A0A182VTM0   A0A182RA73   A0A182M087   A0A067R338   A0A212F0A9   A0A1W4WR19   D6WP50   A0A1B0D1U5   A0A1L8DFI4   A0A2M4CPM0   A0A182R0K8   A0A1J1IJQ1   A0A182V380   B4I197   A0A1Y1MIV2   A0A1B6FEY6   A0A1B6JXK4   A0A210R2I6   A0A1D2N5R9   E0VYJ4   V9KYR4   A0A060WQ06   Q6PHE7   A2ATX1   A0A1B6DMY8   B5X7Z3   A0A3N0YTT4   Q6DRM8   A0A2D0QLQ5   N6U2F2   A0A2J7QRY7   A0A3P9A1F7   A0A1W5B820   A0A1B6CHT7   A0A0P5JIF8   A0A0P6A9E4   K7G156   A0A162P0S9   A0A1S3N3P1   A0A0T6AW95   Q5RJK9   S4RLR2   A0A0P6HWA1  

Pubmed

19121390    26354079    23622113    22118469    25315136    17510324    + More
17994087    26108605    15632085    17550304    24438588    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    20920257    23761445    20353571    20966253    24495485    25830018    25348373    24845553    18362917    19820115    28004739    28812685    27289101    20566863    24402279    24755649    23594743    20433749    15256591    23537049    25069045    17381049    15489334    15057822    15632090   

EMBL

BABH01029997    ODYU01005792    SOQ47034.1    KQ460045    KPJ18235.1    GDQN01004347    + More
JAT86707.1    NWSH01001392    PCG71418.1    KQ459604    KPI92259.1    GAIX01012107    JAA80453.1    RSAL01000053    RVE50069.1    AGBW02012531    OWR44894.1    CH477448    EAT40723.1    GFDL01011860    JAV23185.1    DS231851    EDS37299.1    CH940649    EDW64090.1    CH963920    EDW77592.1    KA648826    AFP63455.1    CH916368    EDW03937.1    CH933807    EDW11181.1    JRES01000438    KNC31202.1    CP012523    ALC38194.1    CH954177    EDV57799.2    CH379061    EAL33003.1    CM000157    EDW88413.1    ATLV01014621    KE524975    KFB39257.1    CM000361    CM002910    EDX03772.1    KMY88186.1    AE014134    AY119625    AAF52185.1    AAM50279.1    CH902624    EDV33279.1    JXJN01023183    JXJN01023184    OUUW01000006    SPP81948.1    GGFM01005308    MBW26059.1    APCN01000642    ADMH02002211    ETN57785.1    GGFJ01007266    MBW56407.1    EZ423850    ADD20126.1    GGFJ01007265    MBW56406.1    GGFK01009890    MBW43211.1    GAMC01000625    JAC05931.1    GBXI01013399    JAD00893.1    NEVH01011882    PNF31334.1    GDHF01009908    JAI42406.1    GAKP01004091    JAC54861.1    CCAG010018118    GGFK01009891    MBW43212.1    AXCM01004246    KK852730    KDR17518.1    AGBW02011142    OWR47147.1    KQ971352    EFA07284.1    AJVK01022357    GFDF01008878    JAV05206.1    GGFL01003108    MBW67286.1    AXCN02000637    CVRI01000054    CRL00416.1    CH480820    EDW54304.1    GEZM01035467    GEZM01035466    JAV83207.1    GECZ01020993    JAS48776.1    GECU01003796    JAT03911.1    NEDP02000743    OWF55187.1    LJIJ01000196    ODN00630.1    DS235845    EEB18450.1    JW871520    AFP04038.1    FR904553    CDQ66685.1    BC056581    AAH56581.1    AL928951    GEDC01010254    JAS27044.1    BT047162    ACI66963.1    RJVU01026577    ROL49595.1    AY648731    AAT68049.1    APGK01052181    KB741211    KB632263    ENN72737.1    ERL90873.1    PNF31335.1    GEDC01024272    JAS13026.1    GDIQ01224098    JAK27627.1    GDIP01033659    JAM70056.1    AGCU01141301    LRGB01000512    KZS18420.1    LJIG01022711    KRT79109.1    AABR07066818    BC086597    CH473987    AAH86597.1    EDM18804.1    GDIQ01021187    JAN73550.1   

Proteomes

UP000005204    UP000053240    UP000218220    UP000053268    UP000283053    UP000007151    + More
UP000095301    UP000008820    UP000002320    UP000008792    UP000007798    UP000001070    UP000009192    UP000037069    UP000095300    UP000092553    UP000192221    UP000091820    UP000008711    UP000001819    UP000002282    UP000030765    UP000000304    UP000000803    UP000007801    UP000092443    UP000092460    UP000268350    UP000075840    UP000000673    UP000076407    UP000078200    UP000075882    UP000075902    UP000092445    UP000075885    UP000075884    UP000235965    UP000075881    UP000069272    UP000092444    UP000075880    UP000075920    UP000075900    UP000075883    UP000027135    UP000192223    UP000007266    UP000092462    UP000075886    UP000183832    UP000075903    UP000001292    UP000242188    UP000094527    UP000009046    UP000193380    UP000000437    UP000087266    UP000221080    UP000019118    UP000030742    UP000265140    UP000192224    UP000007267    UP000076858    UP000002494    UP000245300   

PRIDE

H9J5X2    Q9VMX3   

Pfam

PF01000   RNA_pol_A_bac        + More
PF01193   RNA_pol_L
PF02630   SCO1-SenC

Interpro

IPR011263   DNA-dir_RNA_pol_RpoA/D/Rpb3        + More
IPR011262   DNA-dir_RNA_pol_insert       
IPR036643   RNApol_insert_sf       
IPR036603   RBP11-like       
IPR033901   RNAPI/II_AC40       
IPR001514   DNA-dir_RNA_pol_30-40kDasu_CS       
IPR036249   Thioredoxin-like_sf       
IPR003782   SCO1/SenC       

SUPFAM

SSF56553   SSF56553        + More
SSF55257   SSF55257       
SSF52833   SSF52833       

Gene 3D

2.170.120.12     3.30.1360.10    

CDD

cd07032  RNAP_I_II_AC40
cd02968  SCO

ProteinModelPortal

H9J5X2   A0A2H1W3G1   A0A194RLP3   A0A1E1WII4   A0A2A4JI77   A0A194PHR3   + More
S4NXL6   A0A3S2NKQ5   A0A212ETW7   A0A1I8MS19   Q171Q8   A0A1Q3F6I9   B0W725   B4LUA3   B4N0H9   T1PJ82   B4JB45   B4KGY1   A0A0L0CG52   A0A1I8Q4G0   A0A0M5J3D7   A0A1W4UHS5   A0A1A9WAK6   B3N4C9   Q29L21   B4NW96   A0A084VMR3   B4Q356   Q9VMX3   B3MVL4   A0A1A9X8B4   A0A1B0BZL7   A0A3B0KE55   A0A2M3ZC22   A0A182IB61   W5J4K3   A0A182X4Z9   A0A2M4BTK6   A0A1A9V9Z8   D3TQZ8   A0A2M4BTI1   A0A182KWN0   A0A182U6A7   A0A2M4AR08   W8BX95   A0A0A1WR47   A0A1B0AIS6   A0A182PUH7   A0A182NB71   A0A2J7QRX0   A0A182JUD4   A0A0K8VU50   A0A182F2T0   A0A034WH15   A0A1B0G470   A0A182J1L4   A0A2M4AR67   A0A182VTM0   A0A182RA73   A0A182M087   A0A067R338   A0A212F0A9   A0A1W4WR19   D6WP50   A0A1B0D1U5   A0A1L8DFI4   A0A2M4CPM0   A0A182R0K8   A0A1J1IJQ1   A0A182V380   B4I197   A0A1Y1MIV2   A0A1B6FEY6   A0A1B6JXK4   A0A210R2I6   A0A1D2N5R9   E0VYJ4   V9KYR4   A0A060WQ06   Q6PHE7   A2ATX1   A0A1B6DMY8   B5X7Z3   A0A3N0YTT4   Q6DRM8   A0A2D0QLQ5   N6U2F2   A0A2J7QRY7   A0A3P9A1F7   A0A1W5B820   A0A1B6CHT7   A0A0P5JIF8   A0A0P6A9E4   K7G156   A0A162P0S9   A0A1S3N3P1   A0A0T6AW95   Q5RJK9   S4RLR2   A0A0P6HWA1  

PDB

5LMX     E-value=6.59757e-73,     Score=696

KEGG

101739534    K03027 DNA-directed RNA polymerases I and III subunit RPAC1 | (RefSeq) DNA-directed RNA polymerases

PATHWAY

03020    RNA polymerase - Bombyx mori (domestic silkworm)

GO

GO:0006351   GO:0003677   GO:0046983   GO:0003899   GO:0006383   GO:0005736   GO:0005666   GO:0006360   GO:0016021   GO:0051216   GO:1904888   GO:0042254   GO:0048703   GO:0005525   GO:0000166   GO:0008408   GO:0005112   GO:0015930  

PANTHER

PTHR11800:SF13  

Length:

332

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.07688

Exp number, first 60 AAs:

0.01506

Total prob of N-in:

0.01819

outside

1  -  332

 

 

Pi

16.543732

Theta

18.867695

Tajima's D

-0.303776

CLR

0.807806

CSRT

0.294635268236588

Interpretation

Uncertain