SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15125  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA004992
Annotation
PREDICTED:_uncharacterized_protein_LOC106721620_[Papilio_machaon]
Location in the cell
Nuclear   Reliability : 1.893
 

Sequence

CDS
ATGATGGGGCTAATAACAGGATTAATAAAAAGGCTGCTAAAGTTGGCATTATACATTGCAGTCTTTGCAATAGCTGTGGTGCTAATCCCGAACATTCCTCCATATACTAAATTCTCAAGCATCAAATTAGAACCCACAAAGCCTAGAACAGGTATATTGGAATCGAATGGGCTTCTAAATAATGCTGAACAACTATATAAAGGGAAATTGCTGGGACCAGAAGCATTCCAAACTTTTAATGGGGAATTGTATACTAGTTTAGCCACAGGAGAAATTGTGAAACTCACAGCTGGAGGTCATGTTACTTTTGTAACCAAAATTGGACAACCTTGCAGTGGACTTGCTTATGAACATATCTGCGGAAGACCATTAGGTTTTGTTATCGACGAGAAAACGAAAACTTTATATGTAGCTGATGCATATCATGGTATTTGGAAAGTAGATCTAATCACTGACAAGAAACAATTACTTGTGTCCCCTCGAGTAGAAATTCAAGGAAAAGTACCTAAGATATTCAACAGCATCATTCTGGATAAGAATGGGAATTTATATTGGACAGATTCTAGCGCTGATTTTTATTTAAAAGATGGTGTTTTCAGTACACTAGCTGACCCATCCGGAAGGTTACTGCAATACAATACTGCGAAAAATCAAAGTAAAGTTGTCTTGGAGAACTTGTGGTTTCCAAATGGGGTTGTTGCATCCCTTGATAATCAGTTCATTGTGGTAGCCGAGACCTTCCGCTACCGATTGCTGAAGTACTACATTGATGGGCCGCATAAAGGAAACGCAGAAATATTTGTCTCTGGACTGCCAGGTACTCCAGACAATTTACGCGCGCTACCTGATGGATCTGGCATACTGGTGGGATTGTATACAATGTTCAATGATGATAATCCGCTGCTCACGAAGTCCATGTCAGAAACACCGCACGTTAGGAAGCTTATCGCTCGCTTGTACAGACTCATCGAGTTACCATTTGAATATCTAAACAAAGTCTACCCACACTTTTTATTCGACGAAATTACTTATTACATTGGGCATTTCAAAAGCATCTCTGGATTAACTCCAGCTTTTTCTGGATTATTACAATTAGACTGGAATGGAAACATTGTAGCCTTGTACGACAATACTGATAGTACTTTAGGGCATATAAGTGATGGCATCGTCTACAATGGAAAAATATACACTGGCTCTCCTAATAAGCAGGATTTTATAGGGGCAGTTCCTGCTCCTCCGCAACTATTGAGAGCTTTTTCTAAAACAGTAGAAACTAAAGAAATACCAAAAACCGCATCTAAAATTGAACAAACGAAACCAGTACAGAAAGAAGCTAAAGTAGAAAAAAGAGAAATTAAGACTGAAGCCCCGAAGCCTATTGAACAGCATAAACCGACCCAAAAACAGCACGAGAAAAAACCAACGGCGGAGGCTCCACAAAAATCTCAACCAACTGTAGAACCGCCAAAACCCGCCGCTAACATCGAACCCAAAACAACATCCAAACCTGAAACAAAACCAACCCCTAAACCAAATTCACAACCATCCAAACCAGAAACTAAAACAACTAATAAACCAGAAGCTAAACCAACGCCTAAACCAGAAATTAAACCAACGCCTAAACCAGAAAGTAAAATACCTTCTAAGCCAGAGACTAAACCAACACCTAAACCAGAAACTAAAACGACTCTTAAACCAGAGACTAAACCAACGCCTAAACCAGAAACTAAAACAACGCCTAAACCAGAGGCTAAACCTACGCCTAAACCAGAGACTAAAACGATTCCTCCAACTCCTAAACCGGTAACAAAACCAACGACCAAACCAGTAACGGAATCTTCCAAGCCCGAAATAAAACAAACTCCAGATGTAAAGCCAACTCCGAAGCCTGAAATAAAGTCGTCTCAAACACATAAAACTGAAAGTGCCCAGGTACCAGACAGAAAAGAAAATCTGGTTCAAAAAGATACTCCAAAAATACGGGCAGGTGTAAAATCTGCCACACAAGAAATACCTATAAAAGAAGAGATACCATCTGACACTGCCAAGCCGAACAAGGAAACATTGAAAGTCATTAAAAAAGATGGTCCTACAGAGATTCCGAATCCTAATCTGTAG
Protein
MMGLITGLIKRLLKLALYIAVFAIAVVLIPNIPPYTKFSSIKLEPTKPRTGILESNGLLNNAEQLYKGKLLGPEAFQTFNGELYTSLATGEIVKLTAGGHVTFVTKIGQPCSGLAYEHICGRPLGFVIDEKTKTLYVADAYHGIWKVDLITDKKQLLVSPRVEIQGKVPKIFNSIILDKNGNLYWTDSSADFYLKDGVFSTLADPSGRLLQYNTAKNQSKVVLENLWFPNGVVASLDNQFIVVAETFRYRLLKYYIDGPHKGNAEIFVSGLPGTPDNLRALPDGSGILVGLYTMFNDDNPLLTKSMSETPHVRKLIARLYRLIELPFEYLNKVYPHFLFDEITYYIGHFKSISGLTPAFSGLLQLDWNGNIVALYDNTDSTLGHISDGIVYNGKIYTGSPNKQDFIGAVPAPPQLLRAFSKTVETKEIPKTASKIEQTKPVQKEAKVEKREIKTEAPKPIEQHKPTQKQHEKKPTAEAPQKSQPTVEPPKPAANIEPKTTSKPETKPTPKPNSQPSKPETKTTNKPEAKPTPKPEIKPTPKPESKIPSKPETKPTPKPETKTTLKPETKPTPKPETKTTPKPEAKPTPKPETKTIPPTPKPVTKPTTKPVTESSKPEIKQTPDVKPTPKPEIKSSQTHKTESAQVPDRKENLVQKDTPKIRAGVKSATQEIPIKEEIPSDTAKPNKETLKVIKKDGPTEIPNPNL

Summary

Pfam
PF03088   Str_synth
Interpro
IPR011042   6-blade_b-propeller_TolB-like        + More
IPR018119   Strictosidine_synth_cons-reg       
Gene 3D
PDB
4IYG     E-value=2.8058e-13,     Score=185

Ontologies

Topology

Length:
705
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
21.5111
Exp number, first 60 AAs:
21.49569
Total prob of N-in:
0.99649
POSSIBLE N-term signal
sequence
inside
1  -  11
TMhelix
12  -  34
outside
35  -  705
 
 

Population Genetic Test Statistics

Pi
191.099734
Theta
178.075116
Tajima's D
-0.814889
CLR
1.191219
CSRT
0.176141192940353
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
28556443 IPSKPETKPTPKPETK 100.00 3e-05
28467696 TEAPIQVEQFSFGIMR 100.00 0.002
28556443 LIELPFEYLNK 100.00 0.003
28556443 PTPKPETKTTLKPETKPTPKPETK 100.00 0.015
28556443 VVSVGVPVEDLIK 100.00 0.015
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