Gene

KWMTBOMO15122

Annotation

integrase_core_domain_protein_[Lasius_niger]

Location

Bomo_Chr25(+):5510725-5512145      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.252 Nuclear   Reliability : 1.54

CDS

ATGATGACATTTGATGTTAAGACTGCATTTTTATATGGAGAGCTGGAAGAAAATGTGTATATGAATATACCGGATGGTTATGAAAAACAACCTGGGAAAGTTTGTCGATTAAAGAAATCCTTATATGGACTAAAACAAGCTCCTATTACATGGAACAAAAGATTTACAAAAGCAATGTTAAAACTTGGTTTAAAAGCTACTAAAACAGATCAGTGTGTATTTACAAATGAAGATAATACAATAATAATAGCAATCTATGTAGATGATGGACTTGCTTTGGCTAAAGAAAAGCAAACATTAAAAAACATTTTAAACTGTCTAGAAAAGGAATTTGAAATAAAAGTATACAATGATCCTACTACTTTTATTGGATTTGAAGTCAAGAAGACTGAGAAAGGTATAACACTGAAACAAGAAAGCTACATTGGAAACTTATTAGAGAAATTCAGTATGGAAGATTCTAAACCTGTTAAGACACCCTGTAATACAGAAAATAAAACAGAAACGCAAAACACAGATTCTATAAATTTTCCATATAGAGAACTGATTGGAGGACTTCTATATGTATCTACAAGAACAAGGCCAGACATAAGTCAAGCTGTAAATGAAGCGAGCAGAAAAATAGAAAACCCTACGAAAGATGATGTGATAGCTGCAAAGAAAATACTAAAATATTTAAATGGAACAAGACAGAAAGGAATCATGTACAAGAAAGGAGGAGATATTTCAAAACTAAATGCATACTGTGATGCAGACTATGCCAATTGTGTCAAGACTAGACGCAGTACAACCGGATTTGTGATAATGTTAGCAGAAGGACCTGTGTCTTGGTGTTCAAAACGACAACCAATCGTTGCATTATCATCAACTGAAGCAGAGTATATTGCAGCAGCTGATTGCTGTAAGGAATGCTTATATTTAAAGTCATTTTTAAAGGAGTTGATTGGTTCTGAAGTTGAAATTACATTGAATGTTGATAACCAAAGCGCTATTCAGCTGATCAAAACAGGAGAAGGTGTTAGTGGGTACATCCCTATTAAGAAGTGTGAGCTGTAA

Protein

MMTFDVKTAFLYGELEENVYMNIPDGYEKQPGKVCRLKKSLYGLKQAPITWNKRFTKAMLKLGLKATKTDQCVFTNEDNTIIIAIYVDDGLALAKEKQTLKNILNCLEKEFEIKVYNDPTTFIGFEVKKTEKGITLKQESYIGNLLEKFSMEDSKPVKTPCNTENKTETQNTDSINFPYRELIGGLLYVSTRTRPDISQAVNEASRKIENPTKDDVIAAKKILKYLNGTRQKGIMYKKGGDISKLNAYCDADYANCVKTRRSTTGFVIMLAEGPVSWCSKRQPIVALSSTEAEYIAAADCCKECLYLKSFLKELIGSEVEITLNVDNQSAIQLIKTGEGVSGYIPIKKCEL

Uniprot

A0A1B6FNY3   A0A0J7KC73   A0A0A9W6J9   A0A0A9WDS7   A0A0A9X817   A0A0A9WIY3   + More
A0A0A9Z2D6   A0A146M489   A0A0A9XEU3   A0A0A9YCF4   A0A1B6C2D3   A0A0A9YZ93   A0A0A9X3Z4   A0A0A9ZF63   A0A0A9YMV4   A0A0V0G477   A0A0K8TKJ8   A0A139WJX6   A0A146LHR9   A0A1Y1LVN7   A0A0J7K689   X1WLH4   K7JAZ3   A0A3S3PPW2   A0A0J7K725   A0A1Y1K1E5   K7JC60   A0A1Y1KNM9   A0A0J7NDW8   A0A1Y1MYP5   A0A0J7KRG1   X1XTZ0   A0A2S2NXV8   A0A194RU38   X1X8M7   A0A2N9GBS9   A0A146M1T4   A0A0A9WDA6   A0A2N9I7V5   A0A0J7K8K0   A0A1Y1MYL6   A0A1Y1MYL8   A0A2N9GRB2   A0A0J7JZ17   A0A182GNA3   A0A1Y1NM77   H3GB98   A0A2N9GCE7   A0A0N5E2R3   A0A2N9I1C6   A0A0J7KE66   A0A2N9HGZ8   K7JAW3   A0A2N9FQJ1   A0A085MTW9   A0A0V1NCR1   A0A2N9HJ76   A0A2N9FV67   A0A2N9HZR4   A0A2N9FRN5   A0A2J7QIE3   A0A2N9EK90   A0A2N9FA36   A0A2N9I8Q5   A0A2N9IR42   A0A2N9ELY1   A0A2N9J916   A0A2N9GRR2   A0A2N9GGS7   A0A2N9FZ01   A0A2N9FPD9   A0A2N9FW82   A0A0P4YJD7   A0A2N9EIR6   A0A2N9H6B2   A0A2N9ETC8   A0A0J7K6R6   A0A0A1WXQ3   A0A085MUK1   A0A2N9H0T6   A0A2N9HZ75   A0A2N9GBF3   A0A2N9FA25   A0A2N9F704   A0A0P5ZNF7   A0A2N9IGN4   A0A2N9ISP1   A0A2N9HKJ4   A0A2N9J5P5   A0A2N9I1P0   A0A2N9ID98   A0A2N9I0Q5   A0A2N9GA80   A0A2N9EE21   A0A0P5DII6   A0A2N9GD91   A0A2N9I9F7   A0A2N9ETV7   A0A0N5DST7   A0A0C2WM40  

Pubmed

25401762    26823975    26369729    18362917    19820115    28004739    + More
20075255    26354079    26483478    16946064    24929829    25830018   

EMBL

GECZ01017843    JAS51926.1    LBMM01009639    KMQ87973.1    GBHO01040573    JAG03031.1    + More
GBHO01040574    JAG03030.1    GBHO01028636    GBHO01028635    JAG14968.1    JAG14969.1    GBHO01035865    JAG07739.1    GBHO01006096    JAG37508.1    GDHC01005053    JAQ13576.1    GBHO01024362    JAG19242.1    GBHO01016409    JAG27195.1    GEDC01029908    JAS07390.1    GBHO01035869    GBHO01006095    JAG07735.1    JAG37509.1    GBHO01031779    JAG11825.1    GBHO01003079    JAG40525.1    GBHO01012744    JAG30860.1    GECL01003258    JAP02866.1    GDAI01002967    JAI14636.1    KQ971338    KYB28117.1    GDHC01010945    JAQ07684.1    GEZM01048830    JAV76370.1    LBMM01012772    KMQ86003.1    ABLF02026843    ABLF02042027    AAZX01004557    NCKU01004452    RWS05910.1    LBMM01012536    KMQ86167.1    GEZM01099107    JAV53485.1    AAZX01004151    GEZM01078128    GEZM01078127    JAV63002.1    LBMM01006309    KMQ90715.1    GEZM01017327    JAV90764.1    LBMM01003976    KMQ92933.1    ABLF02043571    ABLF02045585    ABLF02057174    ABLF02063637    ABLF02063640    GGMR01009345    MBY21964.1    KQ459875    KPJ19636.1    OIVN01001707    SPC96839.1    GDHC01004875    JAQ13754.1    GBHO01037840    JAG05764.1    OIVN01004910    SPD19931.1    LBMM01011832    KMQ86599.1    GEZM01017329    JAV90762.1    GEZM01017328    JAV90763.1    OIVN01002268    SPD02135.1    LBMM01020254    KMQ83327.1    JXUM01170260    KQ578575    KXJ67779.1    GEZM01002084    JAV97376.1    DS568115    OIVN01001729    SPC97049.1    OIVN01004563    SPD18125.1    LBMM01008978    KMQ88491.1    OIVN01003464    SPD11432.1    AAZX01023229    OIVN01001052    SPC89229.1    KL367655    KFD60665.1    JYDM01000512    KRZ81798.1    OIVN01003897    SPD14257.1    OIVN01001196    SPC91020.1    OIVN01004420    SPD17230.1    OIVN01001091    SPC89740.1    NEVH01013628    PNF28358.1    OIVN01000147    SPC75222.1    OIVN01000945    SPC87766.1    OIVN01005024    SPD20514.1    OIVN01006160    SPD26619.1    OIVN01000183    SPC75833.1    OIVN01006432    SPD33020.1    OIVN01002622    SPD05126.1    OIVN01001890    SPC98658.1    OIVN01001309    SPC92453.1    OIVN01001022    SPC88819.1    OIVN01001520    SPC94877.1    GDIP01229956    JAI93445.1    OIVN01000116    SPC74628.1    OIVN01002904    SPD07378.1    OIVN01000557    SPC82046.1    LBMM01012696    KMQ86052.1    GBXI01011094    JAD03198.1    KL367644    KFD60897.1    OIVN01002680    SPD05612.1    OIVN01004379    SPD17029.1    OIVN01001669    SPC96464.1    OIVN01000681    SPC84018.1    OIVN01000609    SPC82932.1    GDIP01041293    JAM62422.1    OIVN01005657    SPD23465.1    OIVN01006233    SPD28466.1    OIVN01003569    SPD12194.1    OIVN01006372    SPD31671.1    OIVN01004603    SPD18338.1    OIVN01005312    SPD21871.1    OIVN01004867    SPD19656.1    OIVN01001666    SPC96375.1    OIVN01000036    SPC73022.1    GDIP01156971    JAJ66431.1    OIVN01001762    SPC97349.1    OIVN01005059    SPD20680.1    OIVN01000313    SPC78111.1    KN818358    KIL57786.1   

Proteomes

UP000036403    UP000007266    UP000007819    UP000002358    UP000285301    UP000053240    + More
UP000069940    UP000249989    UP000005238    UP000046395    UP000054924    UP000235965    UP000054549   

Pfam

PF07727   RVT_2        + More
PF00665   rve
PF13976   gag_pre-integrs
PF00098   zf-CCHC
PF13961   DUF4219

Interpro

IPR013103   RVT_2        + More
IPR039537   Retrotran_Ty1/copia-like       
IPR036397   RNaseH_sf       
IPR012337   RNaseH-like_sf       
IPR001584   Integrase_cat-core       
IPR025724   GAG-pre-integrase_dom       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
IPR025314   DUF4219       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       

Gene 3D

3.30.420.10    

ProteinModelPortal

A0A1B6FNY3   A0A0J7KC73   A0A0A9W6J9   A0A0A9WDS7   A0A0A9X817   A0A0A9WIY3   + More
A0A0A9Z2D6   A0A146M489   A0A0A9XEU3   A0A0A9YCF4   A0A1B6C2D3   A0A0A9YZ93   A0A0A9X3Z4   A0A0A9ZF63   A0A0A9YMV4   A0A0V0G477   A0A0K8TKJ8   A0A139WJX6   A0A146LHR9   A0A1Y1LVN7   A0A0J7K689   X1WLH4   K7JAZ3   A0A3S3PPW2   A0A0J7K725   A0A1Y1K1E5   K7JC60   A0A1Y1KNM9   A0A0J7NDW8   A0A1Y1MYP5   A0A0J7KRG1   X1XTZ0   A0A2S2NXV8   A0A194RU38   X1X8M7   A0A2N9GBS9   A0A146M1T4   A0A0A9WDA6   A0A2N9I7V5   A0A0J7K8K0   A0A1Y1MYL6   A0A1Y1MYL8   A0A2N9GRB2   A0A0J7JZ17   A0A182GNA3   A0A1Y1NM77   H3GB98   A0A2N9GCE7   A0A0N5E2R3   A0A2N9I1C6   A0A0J7KE66   A0A2N9HGZ8   K7JAW3   A0A2N9FQJ1   A0A085MTW9   A0A0V1NCR1   A0A2N9HJ76   A0A2N9FV67   A0A2N9HZR4   A0A2N9FRN5   A0A2J7QIE3   A0A2N9EK90   A0A2N9FA36   A0A2N9I8Q5   A0A2N9IR42   A0A2N9ELY1   A0A2N9J916   A0A2N9GRR2   A0A2N9GGS7   A0A2N9FZ01   A0A2N9FPD9   A0A2N9FW82   A0A0P4YJD7   A0A2N9EIR6   A0A2N9H6B2   A0A2N9ETC8   A0A0J7K6R6   A0A0A1WXQ3   A0A085MUK1   A0A2N9H0T6   A0A2N9HZ75   A0A2N9GBF3   A0A2N9FA25   A0A2N9F704   A0A0P5ZNF7   A0A2N9IGN4   A0A2N9ISP1   A0A2N9HKJ4   A0A2N9J5P5   A0A2N9I1P0   A0A2N9ID98   A0A2N9I0Q5   A0A2N9GA80   A0A2N9EE21   A0A0P5DII6   A0A2N9GD91   A0A2N9I9F7   A0A2N9ETV7   A0A0N5DST7   A0A0C2WM40  

KEGG

NA   

GO

GO:0003676   GO:0015074   GO:0000943   GO:0008270   GO:0016021  

PANTHER

PTHR11439  

Length:

351

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00096

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01570

outside

1  -  351

 

 

Pi

192.572698

Theta

144.747052

Tajima's D

1.160012

CLR

0

CSRT

0.702714864256787

Interpretation

Uncertain