Gene

KWMTBOMO15120  Validated by peptides from experiments

Annotation

PREDICTED:_CCA_tRNA_nucleotidyltransferase_1?_mitochondrial_[Bombyx_mori]

Location

Bomo_Chr25(-):5493624-5496584      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 3.29

CDS

ATGGACTTAAATTTAAAGTGTCGGGAAAATCCTATTGTTATTAAAGTGGATTCGCCAGAGTTTAAAAGTATATTTACAGAAGAAGTTATAGACCTAAAAAAAATTTTTGACAAATATAAACATGAAATTAGAATAGCTGGTGGTGCTGTAAGAGATCTTTTAATGGGACTTACACCAAAAGATCTTGATTTTGCCACAACAGCAACTCCTGAAGAAATGAAAGAAATGTTCACTGCGGAAGAAGTAAGAATGATAAACGTTAATGGAGAGAGGCATGGAACTATCACTGCTCGAATTAACGACAAGGAGAATTTTGAGGTAACCACCTTAAGGATTGATATGGTTACCGATGGACGTTTTGCAGATGTTCAATTCACTAAAGATTGGAAACTTGATGCTAACAGAAGAGACCTTACTATAAATTCTATGTTTTTAGGGTTTGATGGATCTGTTTACGATTACTTTTATGGATATGAAGATTTACAAAAGAGAAGAGTTGCATTTGTTGGAGATCCTGATGTTAGAGTCAAAGAAGATTACTTGAGAATTATGCGTTATTTCCGATTTTATGGAAGAATAGCACTAAAACCAGACAATCATGAGGAAGAGACACTAAGAGTACTTAAAAATAATGTTCATGGCTTGGAAAATATATCAGGTGAAAGAATATGGGGTGAACTTAAAAAAATTTTGCAAGGAAACTTTGCTGGAAATTTGTTGAAGACTATGCTCAATGTAGGTGTAGGAGAGTACATGGGTTTCCCATTATCTCCTAATGTGCAAGAACTGGATATGTTATTAAAAAGAGCCCATCATCTTAATTTGAGTCCACTCAGTTATCTTGCTGCTCTAGTTAAAGATTTAGACGAAGTCACAGTCTTGCATAGCAGAATGAAATTCTCGAAATTGGAAAGAGATTTGCTTTACTTTCTGGTAGAACATAGAGATGACAAAGTTTCTGATAGACCCATGAAACCCTATGAATCATTAATATTAAATACGTCAATGAAGCAAAAAGTAGCCATAGAATATGTGCGAGAAGTTTTAAAGTATAGAGGAGATGAAGAACTCTTAAAAAGACTTGACAACTGGGAAATCCCTCGTTTCCCTGTCTCTGGAAAAACCCTTAAAGAATGTGGAGTACCAGTTGGGAAAATAAAAAGACTTAATGTCTTATTTACCTAA

Protein

MDLNLKCRENPIVIKVDSPEFKSIFTEEVIDLKKIFDKYKHEIRIAGGAVRDLLMGLTPKDLDFATTATPEEMKEMFTAEEVRMINVNGERHGTITARINDKENFEVTTLRIDMVTDGRFADVQFTKDWKLDANRRDLTINSMFLGFDGSVYDYFYGYEDLQKRRVAFVGDPDVRVKEDYLRIMRYFRFYGRIALKPDNHEEETLRVLKNNVHGLENISGERIWGELKKILQGNFAGNLLKTMLNVGVGEYMGFPLSPNVQELDMLLKRAHHLNLSPLSYLAALVKDLDEVTVLHSRMKFSKLERDLLYFLVEHRDDKVSDRPMKPYESLILNTSMKQKVAIEYVREVLKYRGDEELLKRLDNWEIPRFPVSGKTLKECGVPVGKIKRLNVLFT

Similarity

Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.

Uniprot

A0A2H1W247   A0A194RK90   A0A194PHQ2   A0A212FKY0   A0A0L7KSR2   A0A1Y1KLT4   + More
A0A067QMS9   A0A2J7R6Q4   A0A2J7R6R1   A0A182PCD2   D6WPQ0   A0A1Q3F6J0   A0A0P6IUW3   B0X1I4   A0A182RLE7   N6SSP0   U4UQC7   A0A182MBI9   A0A0C9QHY9   A0A182W0W7   A0A182HSK4   A0A182XAR2   Q7QCF2   A0A182QZM7   A0A0J7KG76   E2B0H7   A0A182JGI0   A0A182VN68   A0A182TXN6   A0A2R5LNQ0   A0A0K8TSF9   A0A131YKX4   T1HLF6   A0A182NRH5   R4G8X9   A0A224Z2H8   A0A336M097   L7M851   U5EXI2   A0A023FX51   A0A182TAR1   A0A131Y076   A0A026X2T0   A0A182FT11   B7Q4B3   A0A1A9X1T7   A0A1W4WS05   W5JUZ3   A0A182Y6I7   A0A195CYG6   A0A195EHU9   A0A069DU53   A0A1L8DRX1   A0A1E1XCL4   A0A0V0G9C8   A0A2R7X2A3   D3TPV7   F4W8F9   A0A023F915   A0A1A9Z6X6   A0A0L0CFA3   A0A1I8PR30   A0A1B0BXD2   E2BW48   A0A158NK65   A0A1Z5KV19   A0A1A9YBV0   A0A1A9US60   A0A151X6P4   A0A232ELV3   A0A0K8UI83   A0A1B6KQW0   A0A0K8V0J5   A0A1I8NDD8   A0A023GKF0   G3MLP9   A0A293MQG1   W8BNP5   E9H6E9   A0A0A9Y0H3   B4KCB6   A0A034W977   K7J2Z4   A0A0M3QX99   A0A0P5PRQ2   A0A0P5JIZ7   A0A0A1WVK8   A0A0P5QU46   A0A0P5CF70   A0A0P5PAC4   A0A0P5M6M5   A0A0P5RU68   A0A0P5QZG6   A0A0P5VF14   W4YX98   B3LWE9   B4LZ70   A0A1B6DJ94   B4JUH0   A0A0L7RHD8  

Pubmed

26354079    22118469    26227816    28004739    24845553    18362917    + More
19820115    26999592    23537049    12364791    14747013    17210077    20798317    26369729    26830274    28797301    25576852    24508170    30249741    20920257    23761445    25244985    26334808    28503490    20353571    21719571    25474469    26108605    21347285    28528879    28648823    25315136    22216098    24495485    21292972    25401762    26823975    17994087    25348373    20075255    25830018   

EMBL

ODYU01005792    SOQ47026.1    KQ460045    KPJ18248.1    KQ459604    KPI92249.1    + More
AGBW02007949    OWR54392.1    JTDY01006327    KOB66101.1    GEZM01080226    JAV62284.1    KK853153    KDR10588.1    NEVH01006756    PNF36518.1    PNF36519.1    KQ971354    EFA06191.2    GFDL01011873    JAV23172.1    GDUN01000991    JAN94928.1    DS232260    EDS38633.1    APGK01058333    KB741288    ENN70684.1    KB632322    ERL92326.1    AXCM01000146    GBYB01014283    JAG84050.1    APCN01000281    AAAB01008859    EAA08067.5    AXCN02001459    LBMM01007938    KMQ89282.1    GL444608    EFN60819.1    GGLE01006801    MBY10927.1    GDAI01000530    JAI17073.1    GEDV01009382    JAP79175.1    ACPB03010982    GAHY01000192    JAA77318.1    GFPF01012871    MAA24017.1    UFQT01000380    SSX23746.1    GACK01004829    JAA60205.1    GANO01002527    JAB57344.1    GBBL01001223    JAC26097.1    GEFM01003921    JAP71875.1    KK107021    QOIP01000011    EZA62403.1    RLU16618.1    ABJB010408845    DS854427    EEC13685.1    ADMH02000418    ETN66594.1    KQ977110    KYN05698.1    KQ978881    KYN27828.1    GBGD01001593    JAC87296.1    GFDF01004882    JAV09202.1    GFAC01002206    JAT96982.1    GECL01001436    JAP04688.1    KK856508    PTY25922.1    CCAG010012181    EZ423459    ADD19735.1    GL887908    EGI69450.1    GBBI01001253    JAC17459.1    JRES01000562    KNC30184.1    JXJN01022181    GL451091    EFN80080.1    ADTU01018717    GFJQ02008018    JAV98951.1    KQ982472    KYQ56083.1    NNAY01003493    OXU19335.1    GDHF01025920    JAI26394.1    GEBQ01026149    JAT13828.1    GDHF01019943    JAI32371.1    GBBM01001057    JAC34361.1    JO842800    AEO34417.1    GFWV01023170    MAA47897.1    GAMC01011534    JAB95021.1    GL732597    EFX72643.1    GBHO01017032    GBRD01007414    GDHC01006352    JAG26572.1    JAG58407.1    JAQ12277.1    CH933806    EDW13725.2    GAKP01008619    GAKP01008617    JAC50333.1    CP012526    ALC45499.1    GDIQ01124279    JAL27447.1    GDIQ01202261    JAK49464.1    GBXI01011732    JAD02560.1    GDIQ01115888    JAL35838.1    GDIP01187187    LRGB01003375    JAJ36215.1    KZS02967.1    GDIQ01131392    JAL20334.1    GDIQ01160020    JAK91705.1    GDIQ01101543    JAL50183.1    GDIQ01113429    JAL38297.1    GDIP01102693    JAM01022.1    AAGJ04068193    CH902617    EDV43782.1    CH940650    EDW67077.2    GEDC01029396    GEDC01027642    GEDC01011527    GEDC01002698    JAS07902.1    JAS09656.1    JAS25771.1    JAS34600.1    CH916374    EDV91140.1    KQ414592    KOC70218.1   

Proteomes

UP000053240    UP000053268    UP000007151    UP000037510    UP000027135    UP000235965    + More
UP000075885    UP000007266    UP000002320    UP000075900    UP000019118    UP000030742    UP000075883    UP000075920    UP000075840    UP000076407    UP000007062    UP000075886    UP000036403    UP000000311    UP000075880    UP000075903    UP000075902    UP000015103    UP000075884    UP000075901    UP000053097    UP000279307    UP000069272    UP000001555    UP000091820    UP000192223    UP000000673    UP000076408    UP000078542    UP000078492    UP000092444    UP000007755    UP000092445    UP000037069    UP000095300    UP000092460    UP000008237    UP000005205    UP000092443    UP000078200    UP000075809    UP000215335    UP000095301    UP000000305    UP000009192    UP000002358    UP000092553    UP000076858    UP000007110    UP000007801    UP000008792    UP000001070    UP000053825   

Pfam

PF01743   PolyA_pol        + More
PF12627   PolyA_pol_RNAbd
PF08423   Rad51
PF01329   Pterin_4a
PF02978   SRP_SPB

Interpro

IPR032828   PolyA_RNA-bd        + More
IPR002646   PolA_pol_head_dom       
IPR036891   Signal_recog_part_SRP54_M_sf       
IPR004125   Signal_recog_particle_SRP54_M       
IPR036428   PCD_sf       
IPR001533   Pterin_deHydtase       
IPR020588   RecA_ATP-bd       
IPR013632   DNA_recomb/repair_Rad51_C       
IPR027417   P-loop_NTPase       

SUPFAM

SSF47446   SSF47446        + More
SSF52540   SSF52540       
SSF55248   SSF55248       

Gene 3D

1.10.260.30     3.30.1360.20    

CDD

cd05398  NT_ClassII-CCAase

ProteinModelPortal

A0A2H1W247   A0A194RK90   A0A194PHQ2   A0A212FKY0   A0A0L7KSR2   A0A1Y1KLT4   + More
A0A067QMS9   A0A2J7R6Q4   A0A2J7R6R1   A0A182PCD2   D6WPQ0   A0A1Q3F6J0   A0A0P6IUW3   B0X1I4   A0A182RLE7   N6SSP0   U4UQC7   A0A182MBI9   A0A0C9QHY9   A0A182W0W7   A0A182HSK4   A0A182XAR2   Q7QCF2   A0A182QZM7   A0A0J7KG76   E2B0H7   A0A182JGI0   A0A182VN68   A0A182TXN6   A0A2R5LNQ0   A0A0K8TSF9   A0A131YKX4   T1HLF6   A0A182NRH5   R4G8X9   A0A224Z2H8   A0A336M097   L7M851   U5EXI2   A0A023FX51   A0A182TAR1   A0A131Y076   A0A026X2T0   A0A182FT11   B7Q4B3   A0A1A9X1T7   A0A1W4WS05   W5JUZ3   A0A182Y6I7   A0A195CYG6   A0A195EHU9   A0A069DU53   A0A1L8DRX1   A0A1E1XCL4   A0A0V0G9C8   A0A2R7X2A3   D3TPV7   F4W8F9   A0A023F915   A0A1A9Z6X6   A0A0L0CFA3   A0A1I8PR30   A0A1B0BXD2   E2BW48   A0A158NK65   A0A1Z5KV19   A0A1A9YBV0   A0A1A9US60   A0A151X6P4   A0A232ELV3   A0A0K8UI83   A0A1B6KQW0   A0A0K8V0J5   A0A1I8NDD8   A0A023GKF0   G3MLP9   A0A293MQG1   W8BNP5   E9H6E9   A0A0A9Y0H3   B4KCB6   A0A034W977   K7J2Z4   A0A0M3QX99   A0A0P5PRQ2   A0A0P5JIZ7   A0A0A1WVK8   A0A0P5QU46   A0A0P5CF70   A0A0P5PAC4   A0A0P5M6M5   A0A0P5RU68   A0A0P5QZG6   A0A0P5VF14   W4YX98   B3LWE9   B4LZ70   A0A1B6DJ94   B4JUH0   A0A0L7RHD8  

PDB

1OU5     E-value=1.48109e-107,     Score=995

KEGG

101746380    K00974 tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] | (RefSeq) CCA

PATHWAY

03013    RNA transport - Bombyx mori (domestic silkworm)

GO

GO:0016779   GO:0006396   GO:0003723   GO:0003677   GO:0008124   GO:0048500   GO:0008094   GO:0006729   GO:0005524   GO:0006614   GO:0006281   GO:0008312   GO:0004810   GO:0005515   GO:0000166   GO:0008408   GO:0005112   GO:0015930  

Length:

394

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0903200000000001

Exp number, first 60 AAs:

0.00037

Total prob of N-in:

0.02363

outside

1  -  394

 

 

Pi

258.487896

Theta

213.884886

Tajima's D

0.650689

CLR

0.430906

CSRT

0.560421978901055

Interpretation

Uncertain