Silkworm Genome Informatics Database

Gene

KWMTBOMO15117

Pre Gene Modal

BGIBMGA004906

Annotation

Threonine_dehydratase_catabolic_[Papilio_machaon]

Location

Bomo_Chr25(+):5436025-5481621 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 2.633

CDS

ATGGTGTTCCAGACGATCGAGTTTGATCCTATGTGCGATAAGGAGAATCCTCAGAGAATATCCTTCGAAGATGTCTCTGCAGCAGCTTTCAGAATACAAAGTGAGATAATTAAAACGCCGTGCGTGAAATCTCACATGTCCTCCATATTCGGGATGGATATCTATCTGAAAAATGACTTTCTGCAGCACACAGGAAGTTTCAAAGAACGTGGAGCGCGCAACGCCCTAATCCTACTTCCTGAGGAGGCTAAAACTCGGGGCGTCATCTCGGCCTCACTCGGGAATCACTCGCAGGCCCTAAGCTACCACGCGCATAAACTGAATATACCCACCACTGTGGTTATGCCCAATGTCGCTCCAATTATGAAAATCCAGAAATGTCAGTCTTATGGTGCAAACGTCATCGTTCACGGACACGACATGAAGGAGGCCAAGTATCACGCTATGTCCTTGGCTAAGGAAAAGAACCTTACTTATATCAATGGGTATGACCACCCTCATATAATGGCCGGTCAGGGTACCGTTGGCCTCGAGATCCTCGAACAGGTACCAGACGTAGACGCGGTGCTGGTACCAGTCGGTGGAGGTGGACTGTTGGCGGGTGTCGCTACAGCCATAAAACACCTGAAATCACGAGTATTGATTTATGGTGTAGAAACCGAGAAATGTCCTAGCATGAAGGAAGCCATGAGTCATGAGGAACCAGTGAGTGTTGACATCAAGTCGACCCTGGCCGACGGTCTTGCAGTACCTACAGTCGGCTATAATGCTTTTCGAACAATCAAATCAATAGTCGACAAAATGATAACGGTTAACGAAGATTGGTTGGCGCGCGCCATACTACGGCTGGTTGAACAAGAGAAATACGTGGTGGAAGGCGGAGGAGCTGTAGGCGTGGCTGCTATCATAGCTGGACTTGTACCCGAGCTGTGTGGAAAGAAAGTTGTATGCATCCTATCCGGGGGCAACATAGATACGACAATCCTGGGACGGTGTTTAGAGCGAGGTCTGGCGGCGGAGAAGCGTCTGGTCAAGTTCAAAGTGACAGTCAGTGATAGACCTGGTGGTATTGCTGAACTGTGCAAATTGATATCATCCATCGGAGTATCAATAAAGGACATCATGCAGGAGAGAGCTTGGGTGCAGGGAGACATCTTTAGCGTCCGAGTAAAAGTAGTCTGCGAGACTCGTGGTCCGGAACACATGGACGAGCTACGCAATAAGATATCGAACTCCTACCGCGAGTGGGACTTCGCCGGAGAATTCGTTGGGCGCAGAGGAAGCCGCGCTCACATGTCAGAGAGACTGGGAATGGATATTTATTTCAAACAGGAATTTTTACAGTATACTGGAAGTTTCAAAGAACGTGGAGTCCGAAATGCGCTGATATCGTTGAGTGACGAACAAAAGAAAAATGGTGTTATAGCAGCGTCTACTGGAAATCATGGTGCAGCATTAAGCTATCACTCCACCCAACTAGGGATACCGTGCATAGTGGTCGTACCTATTCATACCGCTCTCAACAAAGTTAACAAATGCGAACAGCTCGGAGCGAAAGTTTTCAAGCACGGAATAGACATGTCAGCGGCCAAATTACACGCAATGAGTTTAGGGAAGGAAAAGAAAATGATTTACATTAACGGCTATGATCATCCCGATGTATTAGCTGGACAGGGATCTATCGGTATAGAGATAATTGAGCAATTACCGAATGTTGATGCAGTTTTGATACCCGTCGGTGGTGGAAGCCTATTAACTGGAATTGGGATCTCCGTAAAACATCTTAAGCCAGACACTGAAATATATGGTGTTGAAACAGATAAAACTTGTAGCATGGTAGAATCTCTTAGAAAAAACGAGCGGATTCATTTAGACATCGATTCGACTATCGCTGAGGGTCTGGCTGTAAACGTGGTCGGAACAAACACATTCTACAATATCAAAGGTCTTGTAGACAAAATAGTGGTTGTAAAGGAAGATTGGGTGGCTCGGGCCATCATGCATATAGTAGAAGAGGAGAGATTTGTCGTGGAAGGTGCCGGCGCTGTGGCCGTTGCCGCCATTATGGCGGGATTGTTCCCCAATCTTAAAGGAAAGAAAGTCGTTTGCATAATCTCTGGAGGTAATATTGATGTTACGATTCTGGCCCGCGCGTTGGAACGCGGTATGGCCGCCGAAGGTCGGTTGGTAAAATTTAAAGTGACGGTCCACGACCGCCCTGGGGGCATGGCGGAACTATGCACACTCCTAACTAATTCAGGAATCACAATACGAGACTGCGTCCCCGAACGAGCCTGGGTCAAGGGCGATGTGTTTAGTGCCCAGAAAACAAACGTTGAGGACGACCCGTGGTGTGATCCTGACAATCCAAAGATGATAAGTTACAAAGATACGGTTAAAGCCACATCGGTTATCAAAGAACACATCGCCAAAACTCCTCTAAATGCTCTAGCCTATCATGGTCAACGTCTTAATGTTCCTGTCACTGTTGTAATTCCATATACTGATAAATGCAAAGTGATATTAAGATACCAAAACTACGGAGCTAACATCATACAGCACGGAAAAGATCTTTCCGAAGCCATAAGAAAAGCATTTATCATAAAATCCGAAAGACAAAACTTGACTTACATAAATGGTTACGACCATCCTCATGTGATAGCGGCCTCCGGTTCGATCGCGTTGGAAATTTTAGAGCAGCTCCCGCAAACCGATGTTGTTCTTGTGCCTGTCGGTGGAGGAGGGTTGATTGCTGGCATAGCAACGGTCGCCAAGAAATTGAAGCCGGAAATAAAGATTTATGGAATCGAACCGAAGAAATGCTGCAGCTTCTTCAAAGCCATGGAGAATGACAATCCGTTTCAAACTGTGGTTGGAGCAACAGTCGCTGAACTGCTTGCAGTACCGAAGGCAGGTTTCAACGCTTTTTACACAGCGAGTTTTAAAGAGAGAGGTTCACTAAACGTTTTGCAACTGTTACCATTAGATAAAAAGAAGATCGGCGTCGTGATAGCTTCAATAGGCAATGACGCCATTGGTATATGTCACTACGGCGCCAAGCTCGGCATTCCAGTGATTGTCGTGGTGCCTGTGACAATTCCCATATGTAAACTGCAAAACTGTTACAGTCTCGGCGCAAAAGTTATCCTAGAAGGAAGCAACTTGACGGAATCTCAAAGATTTGCGAGATCGTTGGCGAAAGATAAAGGACTTACACGCGATCATCCTCACATCCTAATGGGTTACGGTACATTAGCACTGGAAATTTTGGAACAAATTCCGCTTGTTGAAGCAGTTATTGTTCCAGTCGGCAGCGGTGGTCTGATCGCGGCAGTTGCCGCCGTTATCAAACATATTAAACCAAATTGCCTTGTTTATGGAGTGCAATCAGAAAACATACCGACTTTCTTTAAATCTTTGGAAATGGACAAGCCGATACAAGTGCCAATGCAAGATAATATGGCAGATGCAATATCTGTGCCAAATGTCGGTGTCAATGCATTCCATACTGCAAAAACTCTGGTAGACAAAATGGTAGATGTCTTGCTGTCACAGGTTGGCGTTAAAGATGATCCAAAAGCTTACAGTCAATTGCTATCTCTAATAGCCAACGGAGGGTATAACGTGGTTCATCAGTTCCAAGATCGAATTTGGGTGGAAGGCAGCGACTATACCATCGAGATCAAATTAGTTTGTGAAACTAGAAATCTTGAACATGCCTTAGAACTGAAAAGGATAATAGAGAGGGCGTATCCTTACTCCTCCGAGTTCGAGACTGAACCTTTTAATGACAAAAGAATGTGCCCGTGCTACGGTCGAGTCGCTACGTAA

Protein

MVFQTIEFDPMCDKENPQRISFEDVSAAAFRIQSEIIKTPCVKSHMSSIFGMDIYLKNDFLQHTGSFKERGARNALILLPEEAKTRGVISASLGNHSQALSYHAHKLNIPTTVVMPNVAPIMKIQKCQSYGANVIVHGHDMKEAKYHAMSLAKEKNLTYINGYDHPHIMAGQGTVGLEILEQVPDVDAVLVPVGGGGLLAGVATAIKHLKSRVLIYGVETEKCPSMKEAMSHEEPVSVDIKSTLADGLAVPTVGYNAFRTIKSIVDKMITVNEDWLARAILRLVEQEKYVVEGGGAVGVAAIIAGLVPELCGKKVVCILSGGNIDTTILGRCLERGLAAEKRLVKFKVTVSDRPGGIAELCKLISSIGVSIKDIMQERAWVQGDIFSVRVKVVCETRGPEHMDELRNKISNSYREWDFAGEFVGRRGSRAHMSERLGMDIYFKQEFLQYTGSFKERGVRNALISLSDEQKKNGVIAASTGNHGAALSYHSTQLGIPCIVVVPIHTALNKVNKCEQLGAKVFKHGIDMSAAKLHAMSLGKEKKMIYINGYDHPDVLAGQGSIGIEIIEQLPNVDAVLIPVGGGSLLTGIGISVKHLKPDTEIYGVETDKTCSMVESLRKNERIHLDIDSTIAEGLAVNVVGTNTFYNIKGLVDKIVVVKEDWVARAIMHIVEEERFVVEGAGAVAVAAIMAGLFPNLKGKKVVCIISGGNIDVTILARALERGMAAEGRLVKFKVTVHDRPGGMAELCTLLTNSGITIRDCVPERAWVKGDVFSAQKTNVEDDPWCDPDNPKMISYKDTVKATSVIKEHIAKTPLNALAYHGQRLNVPVTVVIPYTDKCKVILRYQNYGANIIQHGKDLSEAIRKAFIIKSERQNLTYINGYDHPHVIAASGSIALEILEQLPQTDVVLVPVGGGGLIAGIATVAKKLKPEIKIYGIEPKKCCSFFKAMENDNPFQTVVGATVAELLAVPKAGFNAFYTASFKERGSLNVLQLLPLDKKKIGVVIASIGNDAIGICHYGAKLGIPVIVVVPVTIPICKLQNCYSLGAKVILEGSNLTESQRFARSLAKDKGLTRDHPHILMGYGTLALEILEQIPLVEAVIVPVGSGGLIAAVAAVIKHIKPNCLVYGVQSENIPTFFKSLEMDKPIQVPMQDNMADAISVPNVGVNAFHTAKTLVDKMVDVLLSQVGVKDDPKAYSQLLSLIANGGYNVVHQFQDRIWVEGSDYTIEIKLVCETRNLEHALELKRIIERAYPYSSEFETEPFNDKRMCPCYGRVAT

Uniprot

A0A212FKW8

Pubmed

22118469

EMBL

AGBW02007949 OWR54395.1

Proteomes

UP000007151

Pfam

PF00291 PALP

Interpro

IPR001926 PLP-dep + More
IPR036052 Trypto_synt_PLP_dependent

SUPFAM

SSF53686 SSF53686

ProteinModelPortal

A0A212FKW8

PDB

1TDJ E-value=1.25244e-36, Score=389

KEGG

101741659 K01754 threonine dehydratase [EC:4.3.1.19] | (RefSeq) threo-3-hydroxyaspartate ammonia-lyase-like

PATHWAY

00260    Glycine, serine and threonine metabolism - Bombyx mori (domestic silkworm)
00290    Valine, leucine and isoleucine biosynthesis - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)
01200    Carbon metabolism - Bombyx mori (domestic silkworm)
01230    Biosynthesis of amino acids - Bombyx mori (domestic silkworm)

GO

GO:0004794 GO:0006567 GO:0046983 GO:0003677 GO:0005515 GO:0000166 GO:0008408 GO:0005112 GO:0015930

Length:

1276

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

4.92952

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00188

outside

1 - 1276

Pi

224.39585

Theta

176.910713

Tajima's D

1.014979

CLR

0.244294

CSRT

0.660316984150792

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics