Gene

KWMTBOMO15116  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004994

Annotation

DNA-directed_RNA_polymerase_II_polypeptide_[Bombyx_mori]

Location

Bomo_Chr25(-):5433435-5434384      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.989

CDS

ATGCCTTACGCAAATCAACCCTCTGTTCACATAACAGAACTATCTGATGAAAATGTAAAATTCGTTGTGGAAGATACCGAATTAAGCGTAGCAAACAGTATGAGACGCGTATTTATCGCTGAAACACCAACAATGGCCATCGATTGGGTACAGTTAGAAGCTAATTCCACCGTTTTGAGCGATGAATTCTTAGCACACCGCATCGGTCTCATTCCGCTCATATCAGACGACGTTGTAGACAAAATCAGGTACTCGCGTGATTGCATGTGTGTTGATTTTTGTTCCGAATGCAGTGTCGAATTTACATTAGACGTAAAATGCACAGATGAACAAACAAGACATGTAACAACTGCTGATTTGAAATCGAGCGATCCTAGAGTTGTCCCTGTTACATCACGACATAGAGATGAAGACCAGGCCGATTATGGTGAAGCAGATGAAATATTGATCATTAAGTTACGCAAGGGTCAGGAATTGAAGCTTCGGGCATATGCAAAAAAAGGTTTTGGGAAAGAGCATGCAAAATGGAATCCAACTGCTGGTGTGTCCTTTGAATATGACCCTGATAATATAATGAGACATACGTTATATCCAAAACCAGATGAATGGCCCAAAAGCGAGCACACTGAACTTAATGAAGATCAGTATGAGGCGGACTTCAACTGGGAAGCGAAACCAAACAAATTCTTTTATAATGTAGAATCATCAGGAGCTCTTAAACCAGAGAATATTGTATTAATGGGAATAGTTGTACTGAAAAACAAATTACTGAATCTTCAAGTGCAGTTAGCGCAAGAGGCACAAAATGATGCCTTAGCAATTAATTGA

Protein

MPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKPDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALKPENIVLMGIVVLKNKLLNLQVQLAQEAQNDALAIN

Uniprot

Q1HQ43   A0A1E1WK26   A0A3S2NMY5   A0A0L7L4Y6   Q76L19   A0A194RK95   + More
A0A194PG20   S4PHB9   A0A2H1WN37   A0A212FKY6   A0A195FPY3   A0A158NGZ4   A0A2A3EE71   A0A088AHL4   A0A0L7RI70   A0A195DWL1   A0A0J7KDM3   E2AM00   A0A151XDC5   A0A0M9A5W1   E2BRN1   A0A1B0CFQ2   A0A1Y1L240   W8BMA7   A0A0K8WKL0   A0A034VWR9   A0A0C9Q0S3   A0A1B0G936   A0A1A9V9I1   A0A1B0A539   A0A0K8TLY7   A0A1L8DFQ1   A0A023EM53   B4HXA7   Q16XU4   T1PKG4   A0A1I8PXG1   A0A026WY94   A0A1Q3G0U0   A0A0M4E218   A0A1W4VYL0   B4P3R0   A0A0Q5WM64   E0VJQ8   A0A1A9XL21   Q29K78   B4GX16   A0A1B0B7N8   B4M8L9   B4KEN7   B4JCX9   A0A0P9BPH7   B4Q573   O97183   A0A232ERC2   K7J195   A0A154P6C5   A0A067R8U4   D6WKM1   A0A3B0JQ68   A0A0T6B6B4   A0A2J7QYY2   J3JZ55   A0A336K459   U5EMP9   B4MVQ9   A0A182JBM4   A0A182YE02   A0A182MDW2   A0A182QEX9   A0A182VNU0   A0A182NP53   A0A182JZC7   A0A182TFH3   A0A182LIR5   A0A182XPM5   Q7Q2H6   A0A182IEM9   A0A1B6LGM2   A0A2M3ZII5   A0A2M4AQF8   A0A2M4BWH8   W5JJD1   A0A182FLE9   A0A182RWZ6   A0A182PTA1   A0A084W6R8   A0A1B6GP12   A0A182W843   A0A151IDF6   E9IQH7   A0A1J1HZF0   A0A1B6HQH8   A0A2P8YBY2   T1J2C1   A0A224YYG6   L7M4X1   A0A131XGL5   A0A023FAY9   A0A0V0GAM2  

Pubmed

19121390    26227816    26354079    23622113    22118469    21347285    + More
20798317    28004739    24495485    25348373    26369729    24945155    26483478    17994087    17510324    25315136    24508170    30249741    17550304    20566863    15632085    22936249    10886416    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    28648823    20075255    24845553    18362917    19820115    22516182    23537049    25244985    20966253    12364791    14747013    17210077    20920257    23761445    24438588    21282665    29403074    28797301    25576852    28049606    25474469   

EMBL

BABH01030015    DQ443209    ABF51298.1    GDQN01003719    JAT87335.1    RSAL01000228    + More
RVE43912.1    JTDY01002878    KOB70553.1    AB086067    AB086068    BAD06460.1    BAD06461.1    KQ460045    KPJ18253.1    KQ459604    KPI92242.1    GAIX01003332    JAA89228.1    ODYU01009813    SOQ54483.1    AGBW02007949    OWR54396.1    KQ981387    KYN41994.1    ADTU01015411    KZ288282    PBC29519.1    KQ414584    KOC70555.1    KQ980204    KYN17278.1    LBMM01009236    KMQ88284.1    GL440703    EFN65520.1    KQ982294    KYQ58320.1    KQ435727    KOX77870.1    GL449978    EFN81625.1    AJWK01010250    GEZM01066656    JAV67743.1    GAMC01004327    GAMC01004325    JAC02231.1    GDHF01000621    JAI51693.1    GAKP01012964    JAC45988.1    GBYB01007488    JAG77255.1    CCAG010004816    GDAI01002216    JAI15387.1    GFDF01008877    JAV05207.1    JXUM01142785    GAPW01003221    GAPW01003220    KQ569477    JAC10378.1    KXJ68614.1    CH480818    EDW51687.1    CH477532    EAT39449.1    KA648443    AFP63072.1    KK107063    QOIP01000005    EZA61007.1    RLU22304.1    GFDL01001626    JAV33419.1    CP012523    ALC39541.1    CM000157    EDW88361.1    CH954177    KQS70463.1    DS235226    EEB13614.1    CH379061    EAL33299.1    CH479195    EDW27343.1    JXJN01009696    CH940654    EDW57545.1    CH933807    EDW11916.1    CH916368    EDW03218.1    CH902620    KPU73726.1    CM000361    CM002910    EDX04979.1    KMY90172.1    AE014134    AY060644    AJ133650    AAF53342.1    AAL28192.1    CAB38635.1    NNAY01002641    OXU20881.1    KQ434826    KZC07412.1    KK852860    KDR14837.1    KQ971342    EFA03015.1    OUUW01000006    SPP82532.1    LJIG01009577    KRT82801.1    NEVH01009082    PNF33792.1    APGK01051854    APGK01051855    BT128536    KB741207    KB632327    AEE63493.1    ENN72896.1    ERL92513.1    UFQS01000094    UFQS01000876    UFQT01000094    UFQT01000876    SSW99287.1    SSX07430.1    SSX19667.1    GANO01000923    JAB58948.1    CH963857    EDW75779.1    AXCM01011104    AXCN02002428    AAAB01008972    EAA13388.2    APCN01007829    GEBQ01017167    JAT22810.1    GGFM01007534    MBW28285.1    GGFK01009689    MBW43010.1    GGFJ01008285    MBW57426.1    ADMH02000998    ETN64477.1    ATLV01020932    KE525310    KFB45912.1    GECZ01005612    JAS64157.1    KQ977971    KYM98410.1    GL764790    EFZ17186.1    CVRI01000037    CRK93331.1    GECU01030774    JAS76932.1    PYGN01000718    PSN41769.1    JH431796    GFPF01011491    MAA22637.1    GACK01005643    JAA59391.1    GEFH01003296    JAP65285.1    GBBI01000619    JAC18093.1    GECL01001110    JAP05014.1   

Proteomes

UP000005204    UP000283053    UP000037510    UP000053240    UP000053268    UP000007151    + More
UP000078541    UP000005205    UP000242457    UP000005203    UP000053825    UP000078492    UP000036403    UP000000311    UP000075809    UP000053105    UP000008237    UP000092461    UP000092444    UP000078200    UP000092445    UP000069940    UP000249989    UP000001292    UP000008820    UP000095301    UP000095300    UP000053097    UP000279307    UP000092553    UP000192221    UP000002282    UP000008711    UP000009046    UP000092443    UP000001819    UP000008744    UP000092460    UP000008792    UP000009192    UP000001070    UP000007801    UP000000304    UP000000803    UP000215335    UP000002358    UP000076502    UP000027135    UP000007266    UP000268350    UP000235965    UP000019118    UP000030742    UP000007798    UP000075880    UP000076408    UP000075883    UP000075886    UP000075903    UP000075884    UP000075881    UP000075902    UP000075882    UP000076407    UP000007062    UP000075840    UP000000673    UP000069272    UP000075900    UP000075885    UP000030765    UP000075920    UP000078542    UP000183832    UP000245037   

PRIDE

Q1HQ43    O97183   

Pfam

PF01193   RNA_pol_L        + More
PF01000   RNA_pol_A_bac
PF00291   PALP
PF13656   RNA_pol_L_2
PF02463   SMC_N

Interpro

IPR036603   RBP11-like        + More
IPR001514   DNA-dir_RNA_pol_30-40kDasu_CS       
IPR011262   DNA-dir_RNA_pol_insert       
IPR011263   DNA-dir_RNA_pol_RpoA/D/Rpb3       
IPR036643   RNApol_insert_sf       
IPR036052   Trypto_synt_PLP_dependent       
IPR001926   PLP-dep       
IPR000634   Ser/Thr_deHydtase_PyrdxlP-BS       
IPR008193   RNA_pol_Rpb11_13-16kDa_CS       
IPR009025   RBP11-like_dimer       
IPR033898   RNAP_AC19       
IPR027417   P-loop_NTPase       
IPR041741   SMC3_ABC_euk       
IPR003395   RecF/RecN/SMC_N       

SUPFAM

SSF55257   SSF55257        + More
SSF56553   SSF56553       
SSF53686   SSF53686       
SSF52540   SSF52540       

Gene 3D

2.170.120.12     3.30.1360.10    

CDD

cd07029  RNAP_I_III_AC19
cd03272  ABC_SMC3_euk

ProteinModelPortal

Q1HQ43   A0A1E1WK26   A0A3S2NMY5   A0A0L7L4Y6   Q76L19   A0A194RK95   + More
A0A194PG20   S4PHB9   A0A2H1WN37   A0A212FKY6   A0A195FPY3   A0A158NGZ4   A0A2A3EE71   A0A088AHL4   A0A0L7RI70   A0A195DWL1   A0A0J7KDM3   E2AM00   A0A151XDC5   A0A0M9A5W1   E2BRN1   A0A1B0CFQ2   A0A1Y1L240   W8BMA7   A0A0K8WKL0   A0A034VWR9   A0A0C9Q0S3   A0A1B0G936   A0A1A9V9I1   A0A1B0A539   A0A0K8TLY7   A0A1L8DFQ1   A0A023EM53   B4HXA7   Q16XU4   T1PKG4   A0A1I8PXG1   A0A026WY94   A0A1Q3G0U0   A0A0M4E218   A0A1W4VYL0   B4P3R0   A0A0Q5WM64   E0VJQ8   A0A1A9XL21   Q29K78   B4GX16   A0A1B0B7N8   B4M8L9   B4KEN7   B4JCX9   A0A0P9BPH7   B4Q573   O97183   A0A232ERC2   K7J195   A0A154P6C5   A0A067R8U4   D6WKM1   A0A3B0JQ68   A0A0T6B6B4   A0A2J7QYY2   J3JZ55   A0A336K459   U5EMP9   B4MVQ9   A0A182JBM4   A0A182YE02   A0A182MDW2   A0A182QEX9   A0A182VNU0   A0A182NP53   A0A182JZC7   A0A182TFH3   A0A182LIR5   A0A182XPM5   Q7Q2H6   A0A182IEM9   A0A1B6LGM2   A0A2M3ZII5   A0A2M4AQF8   A0A2M4BWH8   W5JJD1   A0A182FLE9   A0A182RWZ6   A0A182PTA1   A0A084W6R8   A0A1B6GP12   A0A182W843   A0A151IDF6   E9IQH7   A0A1J1HZF0   A0A1B6HQH8   A0A2P8YBY2   T1J2C1   A0A224YYG6   L7M4X1   A0A131XGL5   A0A023FAY9   A0A0V0GAM2  

PDB

6O9L     E-value=2.64637e-108,     Score=1000

KEGG

732923    K03011 DNA-directed RNA polymerase II subunit RPB3 | (RefSeq) DNA-directed RNA polymerase II polypep

PATHWAY

03020    RNA polymerase - Bombyx mori (domestic silkworm)

GO

GO:0006351   GO:0046983   GO:0003677   GO:0003899   GO:0006520   GO:0030170   GO:0034605   GO:0005665   GO:0005703   GO:0005737   GO:0005700   GO:0005634   GO:0006366   GO:0005515   GO:0000166   GO:0008408   GO:0005112   GO:0015930  

Length:

275

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00598

Exp number, first 60 AAs:

0.00023

Total prob of N-in:

0.03085

outside

1  -  275

 

 

Pi

231.461733

Theta

185.705651

Tajima's D

0.775319

CLR

0.329352

CSRT

0.594920253987301

Interpretation

Uncertain