Gene

KWMTBOMO15115

Pre Gene Modal

BGIBMGA004995

Annotation

PREDICTED:_serine_racemase-like_[Bombyx_mori]

Location

Bomo_Chr25(-):5421595-5424554      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.558

CDS

ATGATGAAGGCACTTCAGGCTGGTAAACCAGTCTCCGTGCCGATCGTCTCGAATCTTGCAGAGGGACTCAACGCTTCTAGAGTTGGAGACAATACTTTTGCTACTATTAAAGGACGACTTGATAGAATGTTGGTAGTTGAAGAGTCATATATCGCCCGTGCTATGATATCAGTATTAGAACGGGAACGGCTTGTAACGGACTGCGCTGGAGTCTGTGCTGTAGCAGCTGTCATGCAAGGTTTAGTACCAGAGCTCCGTGGAAAACGGGCGGTATGTGTGCTGAGCAGTGGAAACGTAGACTCGGGTCGCCTGTCTCGTTCTATACAACGTGGGCTCGGTGCTAGCGGTAGACTCCTTCGGTTTGCGGTTGCCGTGCCCGACCATCGATCGGGACTGGAACACCTGGCTAAAACGATCGCAAATGAGAATGCCGTTCTGAAGAGTCTTGTTACTGAGCAAATGTGGGTGCACAGCGATGTTGGCTCTACTTGGGTGAATGTTGTGGTAGAGACTGCCAACGAGGAACATGCCAATAAATTAAAGGATCGTTTGCGTGATCTTTATCCGTCTGCTAGATTTGCTGTCATTGATCTCGATGACAAATACAAAATTGCTGTGCGATAA

Protein

MMKALQAGKPVSVPIVSNLAEGLNASRVGDNTFATIKGRLDRMLVVEESYIARAMISVLERERLVTDCAGVCAVAAVMQGLVPELRGKRAVCVLSSGNVDSGRLSRSIQRGLGASGRLLRFAVAVPDHRSGLEHLAKTIANENAVLKSLVTEQMWVHSDVGSTWVNVVVETANEEHANKLKDRLRDLYPSARFAVIDLDDKYKIAVR

Uniprot

A0A0L7L2P7   A0A2H1WD40   A0A3S2L227   A0A212FKY5   A0A194RLF8   A0A194PFT2   + More
T1I4J3   A0A224XGR1   A0A146L135   A0A0A9XZJ6   A0A0A9XU89   R7UXC2   A0A210PEA5   K1PNT5   A0A1B6I1Q5   T1FMN2   A0A0D2WRW7   A0A2A4J248   A0A3S2M3E5   E9GBI8   V3ZXV2   C3Y9T1   A0A0P5GZH8   A0A0P4WHL5   A0A2H1W1X4   A0A0P4ZTQ6   A0A0P6F9A1   A0A0P5ES17   A0A0P5BXF9   A0A0P5J6M1   A0A0P5AA51   A0A154P355   A0A162DCS6   A0A0P6ABD4   E2C2A7   A0A0L7R1C7   A0A0P6JSY7   A0A1B6FMG6   A0A016W1Y9   A0A088A0I6   H9J5W7   A0A016VZJ7   A0A0M8ZSV0   A0A212FKW8   A0A016W034   A0A3S1BB83   A0A1Y1L4P9   A0A1Y1L250   A0A0K2TDQ9   U4UCZ3   A0A2A3EQU8   T1G187   A0A1I7UDI0   A0A1D1VA39   A0A368H631   N6T538   A0A016U5Z4   A0A016U500   A0A016U3Z4   A7RKN0   A0A0V0XQK4   A0A2A2J672   A0A0V1ESN8   F0WTS3   A0A0V1HP28   A0A1I8A2A3   A0A0V1M2V2   A0A2A6C7P2   H3FW53   A0A2B4STK8   A0A0V0RIN1   K3X242   A0A024FT24   G0NFJ0   A0A0V0W658   A0A2A2LPE4   A0A1Y3ECS9   A0A2H2IKI5   D6WSN2   A0A0C2GNE9   A0A088A0I7   A0A1S3JU28   A0A2G5UXY2   A8WNC1   A0A0V1LIR7   Q21080   W2T5H7   A0A1V9YG80   A0A3P6HGR8   A0A0R3U9S2   A0A2C9JEY1   A0A194RQE8   A0A261C149   E3LGP2   A0A194PFT7   A0A261B0I5   H3G667   F2UJF1   A0A0L0CQY9  

Pubmed

26227816    22118469    26354079    26823975    25401762    23254933    + More
28812685    22992520    21292972    18563158    20798317    25730766    19121390    28004739    23537049    27649274    17615350    21750662    26392177    18806794    18362917    19820115    14624247    9851916    25527045    15562597    26114425    26394399    16946064    26108605   

EMBL

JTDY01003307    KOB69768.1    ODYU01007835    SOQ50947.1    RSAL01000228    RVE43913.1    + More
AGBW02007949    OWR54397.1    KQ460045    KPJ18254.1    KQ459604    KPI92241.1    ACPB03007717    ACPB03007718    GFTR01006212    JAW10214.1    GDHC01017672    JAQ00957.1    GBHO01019326    GBRD01016356    GDHC01009780    JAG24278.1    JAG49470.1    JAQ08849.1    GBHO01019327    GBRD01016355    JAG24277.1    JAG49471.1    AMQN01005886    KB297068    ELU10999.1    NEDP02076749    OWF34823.1    JH816681    EKC18150.1    GECU01026854    GECU01001825    JAS80852.1    JAT05882.1    AMQM01002844    KB095905    ESO09945.1    KE346367    KJE94790.1    NWSH01004124    PCG65472.1    RSAL01000053    RVE50057.1    GL732538    EFX82963.1    KB202619    ESO89242.1    GG666493    EEN62840.1    GDIQ01240834    JAK10891.1    GDRN01060339    GDRN01060336    GDRN01060335    JAI65380.1    ODYU01005792    SOQ47023.1    GDIP01208678    JAJ14724.1    GDIQ01052810    JAN41927.1    GDIP01144174    JAJ79228.1    GDIP01179084    JAJ44318.1    GDIQ01229145    JAK22580.1    GDIP01214368    JAJ09034.1    KQ434809    KZC06262.1    LRGB01002860    KZS05865.1    GDIP01031947    JAM71768.1    GL452104    EFN77927.1    KQ414667    KOC64675.1    GDIQ01009675    JAN85062.1    GECZ01018364    JAS51405.1    JARK01001338    EYC32998.1    BABH01030008    BABH01030009    BABH01030010    BABH01030011    BABH01030012    EYC32999.1    KQ435863    KOX70430.1    OWR54395.1    EYC33000.1    RQTK01000454    RUS79394.1    GEZM01066589    JAV67778.1    GEZM01066588    JAV67779.1    HACA01006230    CDW23591.1    KB632263    ERL90907.1    KZ288194    PBC33874.1    ESO09946.1    BDGG01000004    GAU98519.1    JOJR01000009    RCN52061.1    APGK01052218    APGK01052219    KB741211    ENN72773.1    JARK01001394    EYC10003.1    EYC10006.1    EYC10004.1    DS469516    EDO47936.1    JYDU01000172    KRX90231.1    LIAE01010657    PAV57125.1    JYDR01000010    JYDR01000009    JYDT01000003    JYDS01000003    JYDV01000003    KRY76763.1    KRY77061.1    KRY93260.1    KRZ34484.1    KRZ45454.1    FR824302    CCA24766.1    JYDP01000050    KRZ11381.1    JYDO01000269    KRZ66067.1    ABKE03000060    PDM74179.1    LSMT01000020    PFX32676.1    JYDL01000163    KRX14345.1    GL376562    CAIX01000096    CCI10131.1    GL379876    EGT59622.1    JYDK01000245    KRX71350.1    LIAE01006533    PAV88111.1    LVZM01022133    OUC40928.1    KQ971354    EFA05892.1    KN730814    KIH60604.1    PDUG01000002    PIC44358.1    HE600999    CAP21975.1    JYDW01000047    KRZ59106.1    BX284602    CAA88854.2    KI660225    ETN76446.1    JNBS01003942    OQR84708.1    UXSR01000919    VDD77668.1    KPJ18251.1    NIPN01000047    OZG16277.1    DS268408    LFJK02001013    EFO86191.1    POM34577.1    KPI92246.1    NMWX01000004    OZG03205.1    DS566019    GL832977    EGD77250.1    JRES01000145    KNC33844.1   

Proteomes

UP000037510    UP000283053    UP000007151    UP000053240    UP000053268    UP000015103    + More
UP000014760    UP000242188    UP000005408    UP000015101    UP000008743    UP000218220    UP000000305    UP000030746    UP000001554    UP000076502    UP000076858    UP000008237    UP000053825    UP000024635    UP000005203    UP000005204    UP000053105    UP000271974    UP000030742    UP000242457    UP000095282    UP000186922    UP000252519    UP000019118    UP000001593    UP000054815    UP000218231    UP000054632    UP000054805    UP000054826    UP000054995    UP000055024    UP000095287    UP000054843    UP000232936    UP000005239    UP000225706    UP000054630    UP000053237    UP000008068    UP000054673    UP000243006    UP000005237    UP000007266    UP000085678    UP000230233    UP000008549    UP000054721    UP000001940    UP000243217    UP000267029    UP000046399    UP000076420    UP000216463    UP000008281    UP000237256    UP000216624    UP000005238    UP000007799    UP000037069   

PRIDE

H9J5W7    A8WNC1   

Pfam

PF00291   PALP        + More
PF01842   ACT
PF00650   CRAL_TRIO

Interpro

IPR001926   PLP-dep        + More
IPR036052   Trypto_synt_PLP_dependent       
IPR005789   Thr_deHydtase_catblc       
IPR002912   ACT_dom       
IPR000634   Ser/Thr_deHydtase_PyrdxlP-BS       
IPR011993   PH-like_dom_sf       
IPR036865   CRAL-TRIO_dom_sf       
IPR001849   PH_domain       
IPR001251   CRAL-TRIO_dom       

SUPFAM

SSF53686   SSF53686        + More
SSF52087   SSF52087       

Gene 3D

2.30.29.30     3.40.525.10    

CDD

cd00170  SEC14

ProteinModelPortal

A0A0L7L2P7   A0A2H1WD40   A0A3S2L227   A0A212FKY5   A0A194RLF8   A0A194PFT2   + More
T1I4J3   A0A224XGR1   A0A146L135   A0A0A9XZJ6   A0A0A9XU89   R7UXC2   A0A210PEA5   K1PNT5   A0A1B6I1Q5   T1FMN2   A0A0D2WRW7   A0A2A4J248   A0A3S2M3E5   E9GBI8   V3ZXV2   C3Y9T1   A0A0P5GZH8   A0A0P4WHL5   A0A2H1W1X4   A0A0P4ZTQ6   A0A0P6F9A1   A0A0P5ES17   A0A0P5BXF9   A0A0P5J6M1   A0A0P5AA51   A0A154P355   A0A162DCS6   A0A0P6ABD4   E2C2A7   A0A0L7R1C7   A0A0P6JSY7   A0A1B6FMG6   A0A016W1Y9   A0A088A0I6   H9J5W7   A0A016VZJ7   A0A0M8ZSV0   A0A212FKW8   A0A016W034   A0A3S1BB83   A0A1Y1L4P9   A0A1Y1L250   A0A0K2TDQ9   U4UCZ3   A0A2A3EQU8   T1G187   A0A1I7UDI0   A0A1D1VA39   A0A368H631   N6T538   A0A016U5Z4   A0A016U500   A0A016U3Z4   A7RKN0   A0A0V0XQK4   A0A2A2J672   A0A0V1ESN8   F0WTS3   A0A0V1HP28   A0A1I8A2A3   A0A0V1M2V2   A0A2A6C7P2   H3FW53   A0A2B4STK8   A0A0V0RIN1   K3X242   A0A024FT24   G0NFJ0   A0A0V0W658   A0A2A2LPE4   A0A1Y3ECS9   A0A2H2IKI5   D6WSN2   A0A0C2GNE9   A0A088A0I7   A0A1S3JU28   A0A2G5UXY2   A8WNC1   A0A0V1LIR7   Q21080   W2T5H7   A0A1V9YG80   A0A3P6HGR8   A0A0R3U9S2   A0A2C9JEY1   A0A194RQE8   A0A261C149   E3LGP2   A0A194PFT7   A0A261B0I5   H3G667   F2UJF1   A0A0L0CQY9  

PDB

1TDJ     E-value=2.02976e-10,     Score=154

KEGG

101746658    K01754 threonine dehydratase [EC:4.3.1.19] | (RefSeq) serine racemase-like

PATHWAY

00260    Glycine, serine and threonine metabolism - Bombyx mori (domestic silkworm)
00290    Valine, leucine and isoleucine biosynthesis - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)
01200    Carbon metabolism - Bombyx mori (domestic silkworm)
01230    Biosynthesis of amino acids - Bombyx mori (domestic silkworm)

GO

GO:0004794   GO:0006567   GO:0006565   GO:0003941   GO:0016829   GO:0006520   GO:0030170  

Length:

207

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0781699999999999

Exp number, first 60 AAs:

0.0017

Total prob of N-in:

0.11117

outside

1  -  207

 

 

Pi

205.661975

Theta

194.582071

Tajima's D

0.343069

CLR

49.04067

CSRT

0.467976601169941

Interpretation

Uncertain