Gene

KWMTBOMO15114  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004905

Annotation

ribosomal_protein_S25_[Bombyx_mori]

Location

Bomo_Chr25(+):5419305-5421593      View in EpiBrowser

Full name

40S ribosomal protein S25      

Location in the cell

Cytoplasmic   Reliability : 1.4 Mitochondrial   Reliability : 1.219 Nuclear   Reliability : 1.873

CDS

ATGCCGCCCAAGAAGGACGCGAAGGCTTCGGCCAAACAGCCTCAAAAAACACAGAAGAAGAAGGAAGGATCCGGTGGCGGCAAAGCCAAGAAGAAGAAGTGGTCCAAAGGAAAAGTTCGTGACAAGTTGAACAACCAGGTGTTGTTTGATAAACCCACATATGAGAAACTGTACAAGGAAGTCCCACAGTACAAGCTAATCACACCTGCTGTCGTATCTGAAAGGTTAAAGGTCCGAGGTTCCCTGGCGAGAAGAGCACTCATCGAACTTAGGGAAAAAGGTCTCATCAAACAGGTAGTCCAACACCATGGGCAGGTGATCTACACGCGTGCGACCAAGGGCGATGATCCAGTCGCATAA

Protein

MPPKKDAKASAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDDPVA

Similarity

Belongs to the eukaryotic ribosomal protein eS25 family.

Keywords

Ribonucleoprotein   Ribosomal protein   3D-structure   Complete proteome   Reference proteome  

Feature

chain  40S ribosomal protein S25

Uniprot

Q5UAL8   E7DZ11   A0A212FKX5   A7KCW7   G0ZED0   D1LYN2   + More
Q962Q5   S4NXF7   I4DIN4   A0A3S2NCH0   A0A0L7L3B1   H9J5W5   A0A2H1WD00   A0A194RLR3   A0A1A9W8B6   A0A0K8TPQ1   W8C1T1   A0A0C9R7H7   A0A0A1WFE2   A0A034VXL6   A0A3B0JMI7   B5DWZ7   B4GLG3   A0A1L8E8D3   A0A1L8E8R8   A0A1L8E8Q3   A0A1L8E8I0   A0A1L8E860   A0A1I8N0Z3   A0A1W4U8B5   B4M472   B4QU71   B4KDL1   A0A1B3Q3N5   B4PLI4   B3LZ60   B4NKZ3   B4HID0   B4JFI2   B3NZI0   P48588   D1M7Z2   A2IAC0   A0A1L8E8L6   Q6EUX5   J3JVM4   A0A1L8E862   Q6XJ28   F1CZR7   A0A0J7L2M1   V9IFL9   A0A088AFP5   A0A151XFA2   A0A195CG57   A0A026W7C7   A0A0C9R9E9   N6UHP9   E2A234   A0A1I8P0R9   K7J1H3   D3TL85   A0A2A3EQ61   A0A0M8ZU88   E9ILL1   A0A182JCF3   A0A158NCN3   A0A154P2P0   E2BQ33   A0A2M3ZYP8   A0A182M307   Q56FD9   A0A182W3D2   A0A182FSE1   A0A182RT46   A0A182NSG9   A0A182QBQ5   A0A182Y8V3   A0A2M3ZYZ7   F4WFC5   A0A1B0BL72   A0A195EM06   A0A2Y9D1H2   A0A232EEF1   A0A139WER4   A0A1B0FCP0   A0A182VMZ5   A0A2M3YX84   A0A182XFB7   Q7QA29   A0A182TXG4   A0A182HYK9   B0X529   A0A195BXK7   A0A1A9XWA3   W5JB96   T1DHA6   A0A182JTY8  

Pubmed

22118469    17603110    14668217    23622113    22651552    26354079    + More
26227816    19121390    26369729    24495485    25830018    25348373    15632085    17994087    25315136    17550304    10731132    12537572    12537569    23636399    17437641    22516182    23537049    14525923    24508170    30249741    20798317    20075255    20353571    21282665    21347285    25244985    21719571    20966253    28648823    18362917    19820115    12364791    14747013    17210077    20920257    23761445    24330624   

EMBL

AY769340    AAV34882.1    HQ424714    ADT80658.1    AGBW02007949    OWR54398.1    + More
EF207956    ABS57435.1    JF265008    AEL28839.1    GU084306    ACY95339.1    AF400221    GAIX01009044    JAA83516.1    AK401152    KQ459604    BAM17774.1    KPI92240.1    RSAL01000228    RVE43914.1    JTDY01003307    KOB69764.1    BABH01030017    BABH01030018    BABH01030019    BABH01030020    ODYU01007835    SOQ50948.1    KQ460045    KPJ18255.1    GDAI01001216    JAI16387.1    GAMC01000778    JAC05778.1    GBYB01002721    JAG72488.1    GBXI01016906    JAC97385.1    GAKP01012115    JAC46837.1    OUUW01000007    SPP83467.1    CM000070    EDY68600.1    CH479185    EDW38387.1    GFDG01003828    JAV14971.1    GFDG01003827    JAV14972.1    GFDG01003826    JAV14973.1    GFDG01003903    JAV14896.1    GFDG01003955    JAV14844.1    CH940652    EDW59433.1    CM000364    EDX13402.1    CH933806    EDW13845.1    KX671601    AOG29626.1    CM000160    EDW96891.1    CH902617    EDV42987.1    CH964272    EDW84196.1    CH480815    EDW42645.1    CH916369    EDV93463.1    CH954181    EDV49553.1    AE014297    AY071076    BT050549    U03289    GU120416    ACY71266.1    EF179434    ABM55440.1    GFDG01003785    JAV15014.1    AJ783896    CAH04344.1    BT127292    KB632326    AEE62254.1    ERL92451.1    GFDG01003956    JAV14843.1    AY231651    AAR09674.1    HQ636476    ADX36425.1    LBMM01001041    KMQ97032.1    JR044795    AEY59908.1    KQ982215    KYQ58948.1    KQ977791    KYM99707.1    KK107364    QOIP01000007    EZA51960.1    RLU20456.1    GBYB01003416    JAG73183.1    APGK01035088    KB740923    ENN78167.1    GL435917    EFN72518.1    EZ422187    ADD18380.1    KZ288194    PBC33868.1    KQ435848    KOX71077.1    GL764129    EFZ18399.1    KQ434809    KZC06205.1    GL449694    EFN82221.1    GGFK01000304    MBW33625.1    AXCM01000209    AY961561    AAX62463.1    AXCN02000234    GGFK01000307    MBW33628.1    GL888115    EGI67176.1    JXJN01016226    KQ978691    KYN29248.1    NNAY01005329    OXU16746.1    KQ971354    KYB26424.1    CCAG010010185    GGFM01000122    MBW20873.1    AAAB01008898    EAA09243.4    APCN01005389    DS232362    EDS40675.1    KQ976396    KYM93030.1    ADMH02001999    ETN60039.1    GALA01001361    JAA93491.1   

Proteomes

UP000007151    UP000053268    UP000283053    UP000037510    UP000005204    UP000053240    + More
UP000091820    UP000268350    UP000001819    UP000008744    UP000095301    UP000192221    UP000008792    UP000000304    UP000009192    UP000002282    UP000007801    UP000007798    UP000001292    UP000001070    UP000008711    UP000000803    UP000030742    UP000036403    UP000005203    UP000075809    UP000078542    UP000053097    UP000279307    UP000019118    UP000000311    UP000095300    UP000002358    UP000242457    UP000053105    UP000075880    UP000005205    UP000076502    UP000008237    UP000075883    UP000075920    UP000069272    UP000075900    UP000075884    UP000075886    UP000076408    UP000007755    UP000092460    UP000078492    UP000075882    UP000215335    UP000007266    UP000092444    UP000075903    UP000076407    UP000007062    UP000075902    UP000075840    UP000002320    UP000078540    UP000092443    UP000000673    UP000075881   

PRIDE

Q5UAL8    Q962Q5    H9J5W5    P48588   

Pfam

PF03297   Ribosomal_S25        + More
PF00004   AAA

Interpro

IPR004977   Ribosomal_S25        + More
IPR027417   P-loop_NTPase       
IPR003959   ATPase_AAA_core       
IPR003593   AAA+_ATPase       
IPR036388   WH-like_DNA-bd_sf       

SUPFAM

SSF52540   SSF52540       

Gene 3D

1.10.10.10    

ProteinModelPortal

Q5UAL8   E7DZ11   A0A212FKX5   A7KCW7   G0ZED0   D1LYN2   + More
Q962Q5   S4NXF7   I4DIN4   A0A3S2NCH0   A0A0L7L3B1   H9J5W5   A0A2H1WD00   A0A194RLR3   A0A1A9W8B6   A0A0K8TPQ1   W8C1T1   A0A0C9R7H7   A0A0A1WFE2   A0A034VXL6   A0A3B0JMI7   B5DWZ7   B4GLG3   A0A1L8E8D3   A0A1L8E8R8   A0A1L8E8Q3   A0A1L8E8I0   A0A1L8E860   A0A1I8N0Z3   A0A1W4U8B5   B4M472   B4QU71   B4KDL1   A0A1B3Q3N5   B4PLI4   B3LZ60   B4NKZ3   B4HID0   B4JFI2   B3NZI0   P48588   D1M7Z2   A2IAC0   A0A1L8E8L6   Q6EUX5   J3JVM4   A0A1L8E862   Q6XJ28   F1CZR7   A0A0J7L2M1   V9IFL9   A0A088AFP5   A0A151XFA2   A0A195CG57   A0A026W7C7   A0A0C9R9E9   N6UHP9   E2A234   A0A1I8P0R9   K7J1H3   D3TL85   A0A2A3EQ61   A0A0M8ZU88   E9ILL1   A0A182JCF3   A0A158NCN3   A0A154P2P0   E2BQ33   A0A2M3ZYP8   A0A182M307   Q56FD9   A0A182W3D2   A0A182FSE1   A0A182RT46   A0A182NSG9   A0A182QBQ5   A0A182Y8V3   A0A2M3ZYZ7   F4WFC5   A0A1B0BL72   A0A195EM06   A0A2Y9D1H2   A0A232EEF1   A0A139WER4   A0A1B0FCP0   A0A182VMZ5   A0A2M3YX84   A0A182XFB7   Q7QA29   A0A182TXG4   A0A182HYK9   B0X529   A0A195BXK7   A0A1A9XWA3   W5JB96   T1DHA6   A0A182JTY8  

PDB

4V6W     E-value=9.06264e-30,     Score=318

KEGG

692723    K02975 small subunit ribosomal protein S25e | (RefSeq) RpS25; ribosomal protein S25

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0005840   GO:0005524   GO:0002181   GO:0003735   GO:0022627   GO:0022626  

PANTHER

PTHR12850  

Length:

119

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.31019

outside

1  -  119

 

 

Pi

411.457607

Theta

217.696544

Tajima's D

2.861438

CLR

0.045751

CSRT

0.973251337433128

Interpretation

Uncertain