Gene

KWMTBOMO15111

Pre Gene Modal

BGIBMGA004904

Annotation

isopentenyl-diphosphate_delta_isomerase_[Bombyx_mori]

Location

Bomo_Chr25(+):5378215-5384129      View in EpiBrowser

Full name

rRNA adenine N(6)-methyltransferase      

Location in the cell

Cytoplasmic   Reliability : 2.479

CDS

ATGTTGGTCAGAAAGCTAACAAGATCACTGTGGAGCACCCTAAGAGTCGAGAAAAGATTTTTGGCTTCAGAACCTGTGAAACCTGCTACTCTAGATAAGGATGGTCTGGAATTAGCCCAGGCAGAAGCTTTAGATAAAGATATTTGCCTGCTAGTTGATGAAAAGGACAACTTCATAGGAACGGCTACAAAGAGAGAATGTCATAAAGTAGGACCTGATGGTGATGTGCTACTCCATAGAGCATTCAGTGTTTTCCTCTTCAACAAGAGAGGTGATATGTTCCTTCAGAGGAGATCAAGCCAAAAAGTAACATATCCCGATTACTACACAAATGCTTGCTGCAGCCATCCACTGTACATAGATGAGAAGCCCGAGGAAATCATAACGGCAGCCAGACGTAGGATGAACCATGAACTGGGAATCCCACTAGATCAGTTGGACCCGGAACTGTTTACGTTCATGACCCGCGTGCACTATCACGACCCGGGTGATGGAGTGTGGGGCGAACACGAGATCGACCACATACTGTTCTTCCAAAGCGACGTTAAGGTCAAGCCGAACTCGGACGAGATCTCGGAGTATTGTTTCGTGCCCAAAGCAGAGTTTAATTCGTTCCTTCCAACCTTGGAGGGTCCGATAACGCCGTGGTTCAACATGATCCGCCGCCACCGATTGAAACTCTGGTGGGACAACTTGCACCGCATCAAAGAGCTCGCCGAACCGGAGAAAATACAAAAATTTGTTGATAAAAAATAA

Protein

MLVRKLTRSLWSTLRVEKRFLASEPVKPATLDKDGLELAQAEALDKDICLLVDEKDNFIGTATKRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQRRSSQKVTYPDYYTNACCSHPLYIDEKPEEIITAARRRMNHELGIPLDQLDPELFTFMTRVHYHDPGDGVWGEHEIDHILFFQSDVKVKPNSDEISEYCFVPKAEFNSFLPTLEGPITPWFNMIRRHRLKLWWDNLHRIKELAEPEKIQKFVDKK

Similarity

Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.

Uniprot

H9J5W4   Q2F5Q7   A0A0C5KR39   S4Q0B4   A0A194PG15   I4DJR9   + More
A0A194RQF3   A0A212FKY2   A0A2H1WCZ9   A0A0L7L280   B0XFL6   A0A182QBL0   U5EZ74   A0A2M4ASB9   B4KCU8   A0A182Y3R8   A0A182F7H7   B4MBG8   Q1HQH4   W5JIS4   A0A023EKX7   A0A1Q3F596   A0A1Q3F4G3   A0A0H4IVW7   B4JS40   A0A0M4ERR4   A0A182VZK9   A0A182JRZ8   A0A182UJ31   A0A182WSS1   J3JWE5   B4NKG8   A0A2M4C0K0   A0A182RIM6   A0A182VDA4   I1VJ70   Q7PY18   A0A182HLM4   A0APV9   A0A182NRU9   Q8MRH1   B4R121   B4IKH9   A0A3B0K1T9   B3P033   A0A0K8TM64   Q9VDC2   A0APV5   Q29B04   B4GZ93   A0A1W4VLA3   B4PQD6   B5RIJ6   A0A1Y1MG54   Q56CY5   A0A1Y1MGK6   A0A0N9H5S7   A0A182JG31   D6WP58   A0A1A9UJT2   A0A084VD35   A0A034WJ79   B3LZ32   A0A0L0CGZ6   A0A0K8UMY1   A0A1B0G652   A0A1B0D3X8   A0A1B6LRP7   A0A1A9YLP3   A0A1B0BYC7   A0A1B0CQ36   A0A1L8E526   W8AL09   U4U6N5   A0A1A9Z9J0   A0A2J7PEJ4   A0A1A9WY08   A0A0A1WGH7   A0A2P8YTN1   A0A087ZZX6   A0A1B6C3P3   A4UU28   A0A023FBL3   A0A2A3E5A3   A0A1W4XFU4   A0A1B6ICL1   A0A069DQV6   A0A1L8E516   V9IG77   A0A1I8MJW3   A0A2R7WF69   A0A067QH23   A0A1J1IR23   A0A1I8PFF5   A0A0A9Y2Z6   A0A0L7QU11   A0A026W5A6   R4WQC4   K7J1J3  

EC Number

2.1.1.-

Pubmed

19121390    23622113    26354079    22651552    22118469    26227816    + More
17994087    18057021    25244985    17204158    17510324    20920257    23761445    24945155    26483478    26899871    22516182    23537049    12364791    14747013    17210077    16951084    26369729    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    19126864    26109357    26109356    15632085    17550304    28004739    18362917    19820115    24438588    25348373    26108605    24495485    25830018    29403074    17634749    25474469    26334808    25315136    24845553    25401762    26823975    24508170    30249741    23691247    20075255   

EMBL

BABH01030020    DQ311366    ABD36310.1    KJ951988    AJP70490.1    GAIX01000083    + More
JAA92477.1    KQ459604    KPI92237.1    AK401537    BAM18159.1    KQ460045    KPJ18256.1    AGBW02007949    OWR54401.1    ODYU01007835    SOQ50950.1    JTDY01003409    KOB69603.1    DS232938    EDS26879.1    AXCN02000250    GANO01001306    JAB58565.1    GGFK01010350    MBW43671.1    CH933806    EDW16970.1    KRG02420.1    CH940656    EDW58439.1    DQ440470    CH477376    ABF18503.1    EAT42319.1    ADMH02001371    ETN62790.1    JXUM01079199    JXUM01079200    JXUM01079201    GAPW01003747    KQ563113    JAC09851.1    KXJ74444.1    GFDL01012313    JAV22732.1    GFDL01012589    JAV22456.1    KP689341    AKO63323.1    CH916373    EDV94580.1    CP012526    ALC47901.1    APGK01025935    BT127563    KB740605    AEE62525.1    ENN80064.1    CH964272    EDW85140.1    GGFJ01009377    MBW58518.1    JQ855691    AFI45054.1    AAAB01008987    EAA00859.4    APCN01000909    AM294697    CAL26683.1    AY119630    AAM50284.1    CM000364    EDX12108.1    CH480853    EDW51583.1    OUUW01000013    SPP88227.1    CH954181    EDV48269.1    GDAI01002382    JAI15221.1    AE014297    AY118469    AM294686    AM294687    AM294688    AM294689    AM294690    AM294691    AM294692    AM294694    AM294695    AM294696    FM245625    FM245626    FM245627    FM245628    FM245629    FM245630    FM245631    FM245632    FM245633    FM245634    AAF55875.1    AAM49838.1    CAL26672.1    CAL26673.1    CAL26674.1    CAL26675.1    CAL26676.1    CAL26677.1    CAL26678.1    CAL26680.1    CAL26681.1    CAL26682.1    CAR93551.1    CAR93552.1    CAR93553.1    CAR93554.1    CAR93555.1    CAR93556.1    CAR93557.1    CAR93558.1    CAR93559.1    CAR93560.1    AM294693    CAL26679.1    CM000070    EAL27195.1    CH479198    EDW28111.1    CM000160    EDW96245.1    BT044120    ACH92185.1    GEZM01032178    JAV84792.1    AY966011    AAX78437.1    GEZM01032177    JAV84793.1    KT784804    ALF95236.1    KQ971352    EFA07280.1    ATLV01011143    KE524645    KFB35879.1    GAKP01004540    GAKP01004538    JAC54412.1    CH902617    EDV41906.2    JRES01000409    KNC31515.1    GDHF01029120    GDHF01024255    GDHF01014571    JAI23194.1    JAI28059.1    JAI37743.1    CCAG010005914    AJVK01011091    GEBQ01023543    GEBQ01013748    JAT16434.1    JAT26229.1    JXJN01022585    AJWK01022977    GFDF01000452    JAV13632.1    GAMC01017185    GAMC01017183    JAB89370.1    KB632095    ERL88732.1    NEVH01026094    PNF14763.1    GBXI01016310    JAC97981.1    PYGN01000366    PSN47596.1    GEDC01029443    JAS07855.1    EF489295    ABP01599.1    GBBI01000323    JAC18389.1    KZ288387    PBC26436.1    GECU01023093    JAS84613.1    GBGD01002862    JAC86027.1    GFDF01000462    JAV13622.1    JR045932    AEY60088.1    KK854722    PTY18169.1    KK853419    KDR07729.1    CVRI01000055    CRL00937.1    GBHO01017085    GBRD01011449    GDHC01002841    JAG26519.1    JAG54375.1    JAQ15788.1    KQ414740    KOC62044.1    KK107468    QOIP01000001    EZA50214.1    RLU27474.1    AK417896    BAN21111.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000007151    UP000037510    UP000002320    + More
UP000075886    UP000009192    UP000076408    UP000069272    UP000008792    UP000008820    UP000000673    UP000069940    UP000249989    UP000001070    UP000092553    UP000075920    UP000075881    UP000075902    UP000076407    UP000019118    UP000007798    UP000075900    UP000075903    UP000007062    UP000075840    UP000075884    UP000000304    UP000001292    UP000268350    UP000008711    UP000000803    UP000001819    UP000008744    UP000192221    UP000002282    UP000075880    UP000007266    UP000078200    UP000030765    UP000007801    UP000037069    UP000092444    UP000092462    UP000092443    UP000092460    UP000092461    UP000030742    UP000092445    UP000235965    UP000091820    UP000245037    UP000005203    UP000242457    UP000192223    UP000095301    UP000027135    UP000183832    UP000095300    UP000053825    UP000053097    UP000279307    UP000002358   

PRIDE

H9J5W4    Q2F5Q7    Q8MRH1    Q9VDC2    A0APV5   

Pfam

PF00293   NUDIX        + More
PF09813   Coiled-coil_56
PF00398   RrnaAD

Interpro

IPR000086   NUDIX_hydrolase_dom        + More
IPR015797   NUDIX_hydrolase-like_dom_sf       
IPR011876   IsopentenylPP_isomerase_typ1       
IPR011530   rRNA_adenine_dimethylase       
IPR023165   rRNA_Ade_diMease-like       
IPR020598   rRNA_Ade_methylase_Trfase_N       
IPR029063   SAM-dependent_MTases       
IPR018628   Coa3_cc       
IPR001737   KsgA/Erm       

SUPFAM

SSF55811   SSF55811        + More
SSF53335   SSF53335       

Gene 3D

1.10.8.100    

CDD

cd02885  IPP_Isomerase

ProteinModelPortal

H9J5W4   Q2F5Q7   A0A0C5KR39   S4Q0B4   A0A194PG15   I4DJR9   + More
A0A194RQF3   A0A212FKY2   A0A2H1WCZ9   A0A0L7L280   B0XFL6   A0A182QBL0   U5EZ74   A0A2M4ASB9   B4KCU8   A0A182Y3R8   A0A182F7H7   B4MBG8   Q1HQH4   W5JIS4   A0A023EKX7   A0A1Q3F596   A0A1Q3F4G3   A0A0H4IVW7   B4JS40   A0A0M4ERR4   A0A182VZK9   A0A182JRZ8   A0A182UJ31   A0A182WSS1   J3JWE5   B4NKG8   A0A2M4C0K0   A0A182RIM6   A0A182VDA4   I1VJ70   Q7PY18   A0A182HLM4   A0APV9   A0A182NRU9   Q8MRH1   B4R121   B4IKH9   A0A3B0K1T9   B3P033   A0A0K8TM64   Q9VDC2   A0APV5   Q29B04   B4GZ93   A0A1W4VLA3   B4PQD6   B5RIJ6   A0A1Y1MG54   Q56CY5   A0A1Y1MGK6   A0A0N9H5S7   A0A182JG31   D6WP58   A0A1A9UJT2   A0A084VD35   A0A034WJ79   B3LZ32   A0A0L0CGZ6   A0A0K8UMY1   A0A1B0G652   A0A1B0D3X8   A0A1B6LRP7   A0A1A9YLP3   A0A1B0BYC7   A0A1B0CQ36   A0A1L8E526   W8AL09   U4U6N5   A0A1A9Z9J0   A0A2J7PEJ4   A0A1A9WY08   A0A0A1WGH7   A0A2P8YTN1   A0A087ZZX6   A0A1B6C3P3   A4UU28   A0A023FBL3   A0A2A3E5A3   A0A1W4XFU4   A0A1B6ICL1   A0A069DQV6   A0A1L8E516   V9IG77   A0A1I8MJW3   A0A2R7WF69   A0A067QH23   A0A1J1IR23   A0A1I8PFF5   A0A0A9Y2Z6   A0A0L7QU11   A0A026W5A6   R4WQC4   K7J1J3  

PDB

2ICK     E-value=5.71637e-47,     Score=471

KEGG

693105    K01823 isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] | (RefSeq) Ippi, Ippi_bm; isopentenyl-di

PATHWAY

00900    Terpenoid backbone biosynthesis - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0004452   GO:0008299   GO:0016787   GO:0016021   GO:0009240   GO:0005777   GO:0000179   GO:0003723   GO:0006412   GO:0005515   GO:0000166   GO:0003677   GO:0008408   GO:0005112   GO:0015930  

PANTHER

PTHR11727  

Length:

251

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00297

Exp number, first 60 AAs:

0

Total prob of N-in:

0.07370

outside

1  -  251

 

 

Pi

155.086087

Theta

174.502961

Tajima's D

-0.683685

CLR

0.29179

CSRT

0.204139793010349

Interpretation

Uncertain