SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15107  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA004902
Annotation
Transmembrane_protein_C9orf5_[Papilio_xuthus]
Location
Bomo_Chr25(+):5298871-5320967      View in EpiBrowser
Location in the cell
PlasmaMembrane   Reliability : 4.433
 

Sequence

CDS
ATGCAGCAGTCACCTTTTGAAAATATTTTCAATATCCTGGGTGGTATAACTGAAGGCAATGAAAAGCCTATGAAGCATGGGTTTTATAATGCTTTTGCCCTTTTCATACTCACAATATGTTGCGCCGCGGTATACGTTCTATTCCTAATACTAGAACCATTCTTCAAACCATTATTTTGGGCTCTATTAGTCGGTTCAATACTGCACCCTTTCAAATATAAAATTTCGAAGAAACTCAAGTCGTGGTTCGAAGATCTGGAGAAGTCTGACACGTCAGTGATAGTCGGTTTGATGGTGATCCCAATAAATGTTGTTAACTTCGCTTCAGACACAATTGGACAACAATTTAGAGAGCACTACAAGACTGTAATTACGCTACTCTCTGCAATATTTGTGTTGCCATGGTTGTATGATTCTATACCACGAGGTTTATCCTGTCTATTCTGGCAGTTGATCAGTTTCATTAGCTTTTCCACCAAAATGCTAATAAGCATCTGCACCTCATATATTACTCTAACCATAGTTTTGGCCTACATTATCAGCGTTTACACATTATGGACACCACAAAGGGAGAACATGTTCCGAGTGACGTCACAACTACTTTGGCTCGTAATTACGAGCTTTATGGCTAGTTTAACGGGTTCCATCCAAGTGTACACATTCATTTTTCTCCAAATTATATGTATAACTGGCTTTATAATGGAAATTCTGGATGTTCACAAGAAAATCCTGTTAAAGGATCCTGAAGCATCGATCATAATATCGATACACAGAGTTATAACAAACAGTCACAGAGAGAAAGAAACTAACACAGAAGACAGTAAATCTGATAGTGCGCAAATCTCTGCTAGCGAAACTGAAGGGACCCCGGATAAGGAGACCCCTTCTCCCGGTACACCAGAAACGTTACCCAAAAGCGGAAGCTGGACCAGCAATGAACCCAGCCAATGTCCTCCAAGACCACCGAAAATATTGTATAAAACGCGAACATTGTCCGCATTGCCACTGTCGGGTACAGGCAAAGTTAAACAAGAATATCGCTTCCTGCCATCAATTAAACACAAATCGCTCGATGATTATTACATGAAGAATAACTTCGACAATGACGAAGAAACAGCGTTGTATTTCAAATTGCTTTTCTTCGGTTTCCTCTGTATGTTGGTCTGGAAGAACATATGGTTACTGCCATTAGTTTTGGTGTTTTTAGTTATACACTTCATGAAGATTGGTTTGGATTATTTCGGAGTCTGGTTGTTCTTTGAAAACCAGTACAACAATGTGGCTTTGAAGATAAAAGCTTGGTGGAATAATAGGGAGACTGCTCTAATACCAGCACATATACGTGGAGTCGGTAAAATGATGTCAATATGCAATACAAGCCTCAGAGATATGGCATATAGCTCTGTAGATACTGTGTCCAGTTGCATTGTAATCATTGGCTTGATACTATTTCTTACAGTAGCAACCATTTTTATTTGTATACAGATATACTCGGAAGCCATAGTTGTGGTACAACTAAGCGGTAGTCTTCTTAACAGTACGTATGTTCAGAATAGTGTATTGCATAACTATCTGCCCGAGGGATGGGAGGAGAAACTCGACTCTCTTATCGATGACGCGTATACGTACGGAAGGGAAGGAATATCGACAACCGTTAAAAACATCTTGAAGGAAGGCGATCCAGAGAAAGTATCACGCGTCGAACAACAAGTTTTGGAGATTTGGGATAGAGTTTATCAGAGTTGGGCGTCGGGACATTTCGCCACGGCGGTCGGGCCCCAAGTCGATAGTACCGCCATACAGGACTCGTGGGATAACTTCGTCAACAACGTATCCGACTCATCGAGTTTGTTCGACTACTCCGGTGTAGTTTCGTGGTTACAAGCTAACGTGGGTACTCTGAGCGCTATAGCCAGTAGCATATGGGCGCCGCTGGCCAGCAATGTTTCGTTACTGGCCGGATCTTTGGGGGCATTTACGTCATTACTCCTCGGAGGAGGCAGCGCGATTATCAACATGTTCATAAATATGATAGTATTCTTCACGACACTGTTCTATCTGCTAGCGTCCAGTAACGCGCTCTACAAGCCAGTGGAAGTGATCACTCAGGTGCAGCCGAATTTCGGACCCCGTCTTGGCATTGCACTTTCTGTTGCTATCAACCAGGTATTCAGGGCATCGTTCAAAATGGCGTTGTTCTATGGATTATGGACTTGGCTAGTGCACAATCTCTTCGGGGCTAAAGTGGTATATTTACCTTCAGGTGTTAGAATAAACTTCACGAGTTGCCAAAACGCTGGCTGGTCTTGTTTCGCAACAAAGGACATTGTTTACAGTTGTGCTAATGTCAAAAGTAATGACTTCATAATACATCTAAAGGACTTTTACACGGATGATATAAAAAGTTTAACCGTGCAGAATTGTAAGGACGTCAAAGTGGTCCTCGACTGCCCTATATTACAGAAGGCATCTTCGCTTCAAAAGTTCAAAGTAAAAGACTGCGACAAACTCCAATTCATCTCCCTATCGAACAACTCCCCGGTTCAGACGCCGCCGGAAGTTACCATAGAGAACGTGAAGGAAGTGGTGTCTTTACCAAGGAAGTTCTTCAGATCACCGACCACTGCTAACGAAGTGAAATGCTCCGGTACCGCCTCCCTGAAAAGTATAAGTGTCGTCGATAGCTATATAAAATCAATAAACACAAGGGCCATTTACAACGTAACCGGAGTCAGTAGCGTTGAGTTCGTGAATGTGACTATCGGTGAGATTCAGAATCAAGGTATAGAGGCCATATTAGGGAACGAGGACACGTTGTTTTCGTTCGCCAACAACAAAATAGAAAGCTTGAGATATAAAGGCGTAGCTGTACAATGTACAAGTGCGTTCTTCACGGAGAACACATTTCGGGACGTCCTTAGTAATTCGTTGAATGTCACCGCGGACAATCTGAGTGTCGTTGGTAACAAATTCAAACAGGTCAACGGTCTGATACTGAAAGCTTCGAGCATAGAAATATCGAAAAACGAGTTCGGCACGCTCAAGAGCAACGCTTTCACGAACGTTAAGTGTTTAAGAAGAAATACCGGTAGAAGAGGTTTCACGTTCGCTCTGAATACTGTAGAAAACGTTGAACCACATTCGCTGGTCTTCGATTACGCTAGTTGCAAGACAGCCGGCGCCTCTGTTACGTATGAAAACAACAAAATCGATTGCAGATGCCGCGACATAGACTTCTTGGATGCTCCAACTGAACTCAACAGCTTAATTCTGGACTTGTCGTTTAACAACACGTGCTTATCGGCACCCTGTCTGCTTCCCGTCGAGATTGTCAAGCTGTTGTTGGAGAGGGGAATGTGCGATATAAATCTCGATCCTCAAATAATGTGCTTGTTGTACGGCGATAGGCATCTCGCGAACAACGAGTTGACGACAGACGAGGACGTCACCGAGCCCACGTCCACATTTTACATAATACGCCAGGCAGATCCCCTTGACGGCGGCGCTAGTTCGTTAACGGCTATAAACAAGGACGAACTCCTTAGGGACAGCCATTTCAACATAACGAATAGAACGTCTATTAGAGTCGTTTTCGATTCATCTAGAGACTTCGTTGAGACCTTGCGAGGCACGGATTCGTCTCGTAAAAAAACCACAGACAAAGTCAACGAGGAATACACGAACAGATGTGTCGGTCCTCAGTGCAGGAACAACGCGGTGCAGGACAAACAGAAGGCGCTTGATTTTTACAAATTCATTTATAGTCAGCTACGCCAGCCGAGGGCAAACGATAAGAAGAAGAAAAAGAGGGTTCTAGTGCCACAATTGGATGCCGTTCTAGCTGCAGTGCTAGGAGCTGCGCCGTTCCTAGGGCCATATTTGGCGGGTTTACCGGCAGCTCTTGATGTGTGGCTTCAGGGCAGACCCTTGGCGGCTGTGATGCTGCCCCTTGTTCAAGCCGCACCCATCGCATTTTTAGATGCGGCTGTTTACGCTGAGATTAAAGATGGTGGACATCCCTACGTGACAGGTCTAGCTATAGCGGGCGGTATCTTCTATCTCGGTCCCGAAGGAGCTATACTAGGTCCCTTGTTACTATGCTGTCTTATGGTGGTCCTGAATTTATCGTCAGCATTCCTCCGAGACACGCCAACGGACGAGAGGGCCGCCTTACATTCTCGTGTCAGATATGGTGCCTATATGTATTGA
Protein
MQQSPFENIFNILGGITEGNEKPMKHGFYNAFALFILTICCAAVYVLFLILEPFFKPLFWALLVGSILHPFKYKISKKLKSWFEDLEKSDTSVIVGLMVIPINVVNFASDTIGQQFREHYKTVITLLSAIFVLPWLYDSIPRGLSCLFWQLISFISFSTKMLISICTSYITLTIVLAYIISVYTLWTPQRENMFRVTSQLLWLVITSFMASLTGSIQVYTFIFLQIICITGFIMEILDVHKKILLKDPEASIIISIHRVITNSHREKETNTEDSKSDSAQISASETEGTPDKETPSPGTPETLPKSGSWTSNEPSQCPPRPPKILYKTRTLSALPLSGTGKVKQEYRFLPSIKHKSLDDYYMKNNFDNDEETALYFKLLFFGFLCMLVWKNIWLLPLVLVFLVIHFMKIGLDYFGVWLFFENQYNNVALKIKAWWNNRETALIPAHIRGVGKMMSICNTSLRDMAYSSVDTVSSCIVIIGLILFLTVATIFICIQIYSEAIVVVQLSGSLLNSTYVQNSVLHNYLPEGWEEKLDSLIDDAYTYGREGISTTVKNILKEGDPEKVSRVEQQVLEIWDRVYQSWASGHFATAVGPQVDSTAIQDSWDNFVNNVSDSSSLFDYSGVVSWLQANVGTLSAIASSIWAPLASNVSLLAGSLGAFTSLLLGGGSAIINMFINMIVFFTTLFYLLASSNALYKPVEVITQVQPNFGPRLGIALSVAINQVFRASFKMALFYGLWTWLVHNLFGAKVVYLPSGVRINFTSCQNAGWSCFATKDIVYSCANVKSNDFIIHLKDFYTDDIKSLTVQNCKDVKVVLDCPILQKASSLQKFKVKDCDKLQFISLSNNSPVQTPPEVTIENVKEVVSLPRKFFRSPTTANEVKCSGTASLKSISVVDSYIKSINTRAIYNVTGVSSVEFVNVTIGEIQNQGIEAILGNEDTLFSFANNKIESLRYKGVAVQCTSAFFTENTFRDVLSNSLNVTADNLSVVGNKFKQVNGLILKASSIEISKNEFGTLKSNAFTNVKCLRRNTGRRGFTFALNTVENVEPHSLVFDYASCKTAGASVTYENNKIDCRCRDIDFLDAPTELNSLILDLSFNNTCLSAPCLLPVEIVKLLLERGMCDINLDPQIMCLLYGDRHLANNELTTDEDVTEPTSTFYIIRQADPLDGGASSLTAINKDELLRDSHFNITNRTSIRVVFDSSRDFVETLRGTDSSRKKTTDKVNEEYTNRCVGPQCRNNAVQDKQKALDFYKFIYSQLRQPRANDKKKKKRVLVPQLDAVLAAVLGAAPFLGPYLAGLPAALDVWLQGRPLAAVMLPLVQAAPIAFLDAAVYAEIKDGGHPYVTGLAIAGGIFYLGPEGAILGPLLLCCLMVVLNLSSAFLRDTPTDERAALHSRVRYGAYMY

Summary

Uniprot
A0A2H1WQD0   A0A194PFS4   A0A194RLR8  
Pubmed
26354079   
EMBL
ODYU01009910    SOQ54644.1    KQ459604    KPI92231.1    KQ460045    KPJ18260.1    + More
Proteomes
UP000053268    UP000053240   
Interpro
IPR002549   AI-2E-like        + More
IPR011050   Pectin_lyase_fold/virulence       
IPR032675   LRR_dom_sf       
SUPFAM
SSF51126   SSF51126       
Gene 3D
3.80.10.10    
ProteinModelPortal
A0A2H1WQD0   A0A194PFS4   A0A194RLR8  

Ontologies

KEGG
101747204    no KO assigned | (RefSeq) transmembrane protein 245
GO
GO:0016021  
PANTHER
PTHR21716  

Topology

Length:
1402
Number of predicted TMHs:
16
Exp number of AAs in TMHs:
319.591700000001
Exp number, first 60 AAs:
23.96861
Total prob of N-in:
0.82062
POSSIBLE N-term signal
sequence
inside
1  -  27
TMhelix
28  -  50
outside
51  -  91
TMhelix
92  -  109
inside
110  -  121
TMhelix
122  -  141
outside
142  -  160
TMhelix
161  -  183
inside
184  -  195
TMhelix
196  -  213
outside
214  -  217
TMhelix
218  -  237
inside
238  -  371
TMhelix
372  -  394
outside
395  -  397
TMhelix
398  -  420
inside
421  -  471
TMhelix
472  -  494
outside
495  -  640
TMhelix
641  -  663
inside
664  -  669
TMhelix
670  -  689
outside
690  -  729
TMhelix
730  -  752
inside
753  -  1277
TMhelix
1278  -  1300
outside
1301  -  1309
TMhelix
1310  -  1332
inside
1333  -  1336
TMhelix
1337  -  1354
outside
1355  -  1357
TMhelix
1358  -  1380
inside
1381  -  1402
 
 

Population Genetic Test Statistics

Pi
229.607716
Theta
193.417375
Tajima's D
0.504901
CLR
0.116191
CSRT
0.519074046297685
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
26280517 INFICQYIASGK 100.00 1e-05
24402669 INFQNPPIR 100.00 1e-05
24402669 GVAITGEISR 100.00 4e-05
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