Gene

KWMTBOMO15105

Annotation

PREDICTED:_uncharacterized_protein_LOC105389553_[Plutella_xylostella]

Location

Bomo_Chr25(-):5208283-5209620      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.008 Nuclear   Reliability : 1.595

CDS

ATGCATCGCGAGAACGGCCAAGCCGAACGCTACTGCAGAACCGTTCTTAATTTACTACGAGTCGAAGTTGGTAGCAAAGGCTCCCAATGGTCTGATGTGCTGTGGAAAGCACAGCTTACTTTAAACATCACGAAGCAGACGACCACGCAGGCTTCACCACTTCAGCTCCTTATTGGTATAGAGGCAGCTACTCCAGTCATTAGAGATCTGGTGCGCGATGTTGCGTTAGACGCCAATTCTAACCGTGAAGCTTTACTAACCCTCAGTCGACAGAAAGCATCCGAATTACTATTGGACAATCAACGGCGACAAGACGAACAGGTCAACGAACGTCGGCGCCAGCCCACAACGTTTGCTGTGGGTGACTTCGTGTTCGTCAACAAGGCAACACAGTCAACGGGCAAACTCGACTCCGGGATGCGCGGCCCTTACAAGGTCTTGCGCACGCTTCCACATCACCGTTACGAGCTGGAGCTTCTCGCCGGTTCCTACGGCAAAAAGACACAAGCGGCCGCCCAATGTATGGTGTTGTGGCGCGGCGAGTGGACCCCGGAGACATGCAGCGCTTTCTTTGAAACTGAGGGTGAACTTATTGATGCGACTTCTGACGTAGCTGGAAGAGGCCTTCCTCTATTGAGAGATGAGGCGGTCGAGGACGCCTCGCCATCAGGAACGGCCGTATTACCGAGTCCAGGCAACCCCCGACCGGAAACACTATAA

Protein

MHRENGQAERYCRTVLNLLRVEVGSKGSQWSDVLWKAQLTLNITKQTTTQASPLQLLIGIEAATPVIRDLVRDVALDANSNREALLTLSRQKASELLLDNQRRQDEQVNERRRQPTTFAVGDFVFVNKATQSTGKLDSGMRGPYKVLRTLPHHRYELELLAGSYGKKTQAAAQCMVLWRGEWTPETCSAFFETEGELIDATSDVAGRGLPLLRDEAVEDASPSGTAVLPSPGNPRPETL

Uniprot

A0A3S2PH68   A0A194R3M4   A0A0A9X1Z8   A0A146M2J2   A0A0A1XC90   A0A0A1WXH9   + More
A0A0A1XFE9   A0A084VNH0   A0A2A4JMN7   A0A0J7K890   A0A0J7K8L8   A0A0C9QX60   A0A0K8U3Q1   A0A0J7KFF1   A0A0A9WLN3   A0A034WRX5   A0A182GLM7   A0A0J7KEC9   A0A034VLR3   A0A034WW03   A0A0J7JZI0   A0A1R1PJ63   W8APB2   A0A2A4J7U9   A0A034VKV9   W8C8Q1   A0A0J7MSH3   A0A0J7NF11   A0A0J7KLK4   A0A0J7KQN5   W8B0V9   A0A2R5LP11   A0A164TTE6   A0A034WKE0   A0A1Y1NEJ5   A0A151RCB1   X1XM84   A0A0P4VR68   A0A0K8SCT3   A0A1R1PN02   V5GQL3   W8ANK3   A0A2I0VYA3   A0A034VAM6   D6WIS8   A0A077ZMK6   A0A0J7K9X8   A0A034VDD5  

Pubmed

26354079    25401762    26823975    25830018    24438588    25348373    + More
26483478    24495485    28004739    22057054    27129103    26754549    28902843    18362917    19820115   

EMBL

RSAL01000035    RVE51343.1    KQ460855    KPJ11840.1    GBHO01030786    JAG12818.1    + More
GDHC01004980    JAQ13649.1    GBXI01005730    JAD08562.1    GBXI01010986    JAD03306.1    GBXI01004632    JAD09660.1    ATLV01014752    KE524984    KFB39514.1    NWSH01001093    PCG72660.1    LBMM01011782    KMQ86633.1    LBMM01011790    KMQ86624.1    GBYB01008369    JAG78136.1    GDHF01030992    JAI21322.1    LBMM01008296    KMQ88999.1    GBHO01037839    JAG05765.1    GAKP01001563    JAC57389.1    JXUM01072364    KQ562717    KXJ75259.1    LBMM01008871    KMQ88569.1    GAKP01016237    JAC42715.1    GAKP01000974    JAC57978.1    LBMM01019746    KMQ83464.1    LSSK01001748    LSSK01001018    OMH78870.1    OMH80988.1    GAMC01020207    JAB86348.1    NWSH01002797    PCG67520.1    GAKP01016235    JAC42717.1    GAMC01007326    JAB99229.1    LBMM01019745    KMQ83465.1    LBMM01005919    KMQ91095.1    KMQ91096.1    LBMM01004258    KMQ92653.1    GAMC01015907    JAB90648.1    GGLE01007069    MBY11195.1    LRGB01001727    KZS10738.1    GAKP01004347    JAC54605.1    GEZM01005427    JAV96179.1    KQ483848    KYP40258.1    ABLF02004526    ABLF02054969    GDKW01003992    JAI52603.1    GBRD01014907    JAG50919.1    LSSK01000685    OMH82338.1    GALX01004559    JAB63907.1    GAMC01016175    JAB90380.1    KZ503099    PKU68398.1    GAKP01019383    JAC39569.1    KQ971321    EEZ99497.2    HG807638    CDW60978.1    LBMM01010976    KMQ87102.1    GAKP01019384    JAC39568.1   

Proteomes

UP000283053    UP000053240    UP000030765    UP000218220    UP000036403    UP000069940    + More
UP000249989    UP000076858    UP000075243    UP000007819    UP000233837    UP000007266    UP000030665   

Pfam

PF17921   Integrase_H2C2        + More
PF00665   rve
PF00078   RVT_1
PF00077   RVP
PF17919   RT_RNaseH_2
PF02037   SAP
PF00098   zf-CCHC
PF17917   RT_RNaseH
PF12384   Peptidase_A2B
PF03732   Retrotrans_gag

Interpro

IPR041588   Integrase_H2C2        + More
IPR036397   RNaseH_sf       
IPR012337   RNaseH-like_sf       
IPR001584   Integrase_cat-core       
IPR001878   Znf_CCHC       
IPR001969   Aspartic_peptidase_AS       
IPR001995   Peptidase_A2_cat       
IPR041577   RT_RNaseH_2       
IPR000477   RT_dom       
IPR018061   Retropepsins       
IPR021109   Peptidase_aspartic_dom_sf       
IPR036875   Znf_CCHC_sf       
IPR036361   SAP_dom_sf       
IPR003034   SAP_dom       
IPR041373   RT_RNaseH       
IPR024650   Peptidase_A2B       
IPR005162   Retrotrans_gag_dom       

SUPFAM

SSF53098   SSF53098        + More
SSF50630   SSF50630       
SSF57756   SSF57756       
SSF68906   SSF68906       

Gene 3D

3.30.420.10     2.40.70.10     1.10.720.30    

ProteinModelPortal

A0A3S2PH68   A0A194R3M4   A0A0A9X1Z8   A0A146M2J2   A0A0A1XC90   A0A0A1WXH9   + More
A0A0A1XFE9   A0A084VNH0   A0A2A4JMN7   A0A0J7K890   A0A0J7K8L8   A0A0C9QX60   A0A0K8U3Q1   A0A0J7KFF1   A0A0A9WLN3   A0A034WRX5   A0A182GLM7   A0A0J7KEC9   A0A034VLR3   A0A034WW03   A0A0J7JZI0   A0A1R1PJ63   W8APB2   A0A2A4J7U9   A0A034VKV9   W8C8Q1   A0A0J7MSH3   A0A0J7NF11   A0A0J7KLK4   A0A0J7KQN5   W8B0V9   A0A2R5LP11   A0A164TTE6   A0A034WKE0   A0A1Y1NEJ5   A0A151RCB1   X1XM84   A0A0P4VR68   A0A0K8SCT3   A0A1R1PN02   V5GQL3   W8ANK3   A0A2I0VYA3   A0A034VAM6   D6WIS8   A0A077ZMK6   A0A0J7K9X8   A0A034VDD5  

PDB

3DLR     E-value=0.0183676,     Score=86

KEGG

NA   

GO

GO:0003676   GO:0015074   GO:0004190   GO:0008270   GO:0003964   GO:0003677   GO:0016020   GO:0006412   GO:0005515   GO:0000166   GO:0008408   GO:0005112   GO:0015930  

Length:

239

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0039

Exp number, first 60 AAs:

0.00177

Total prob of N-in:

0.16688

outside

1  -  239

 

 

Pi

3.301531

Theta

19.260105

Tajima's D

-0.507335

CLR

4213.074564

CSRT

0.24108794560272

Interpretation

Uncertain