Gene

KWMTBOMO15101  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004898

Annotation

PREDICTED:_dolichyl-diphosphooligosaccharide--protein_glycosyltransferase_subunit_STT3B_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr25(+):4851677-4863151      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.933

CDS

ATGCCGTCCACTACTGAGACCCTTCCCAGTAATGGGCGCAGCAAGGGGCTATTTCAAAATACGGCGGGTTTGAGTACGCTCATCACTGTAACTGTCCTGACACTGGCTTGGTTGGCCGGTTTCGCATCCCGGCTTTTCGCTGTGATACGTTTTGAAAGTATAATTCATGAATTCGATCCTTGGTTCAACTACCGGTCTACAGCGTATATGGTTCAGCACGGTTTCTATAATTTTTTGAACTGGTTCGATGAGCGTGCTTGGTACCCACTGGGACGTATCGTGGGGGGTACGGTGTATCCTGGTCTAATGATCACTTCAGGCACTATACATTGGATACTGCATGCTCTCAACATACCCATTCATATCCGAGACATATGTGTATTCCTTGCCCCAGTATTCAGTGGGCTCACAGCAATTGCAACGTACTTATTGACTTCTGAACTATGGTCGCGTGGAGCTGGGCTATTTGCTGCCTGTTTCATAGCTATAGTGCCAGGTTACAGCAGTAGATCCGTTGCTGGGAGCTACGATAATGAAGGAATTGCTATATTTGCATTGCAATTCACATATTACTTGTGGCTGAAAAGTGTTAAAAGTGGGTCCGTATTCTGGTCTATTTGCACTGCATTGTCATATTTTTACATGGTTTCAGCATGGGGCGGATACGTATTCATTATCAATTTGATACCTCTTCACGTCTTTGTTCTTCTAATAATGGGACGTTTCTCGCAGCGTCTTTTCGTCAGCTACTCAGTTTTCTACATTATTGGCTTATTGCTGTCCATGCAGATTCCCTTTGTTGGGTTTCAACCAATACGTACCAGTGAACATATGGCAGCGTCAGGTGTGTTTGCATTGTTGATGGCCATCGGAGCCCTAAAGTACCTGCACAGTCTGAACCCTAAAGGACAATGGAAACAACTGCTAATCTTGGGCGGTATGCTGGCCGCGGGACTCGTGTTCCTGGCTGTGGTGCTCCTCACATACATGGGAGTCATTGCACCTTGGAGTGGAAGGTTTTATTCACTCTGGGACACGGCATACGCAAAGATTCACATTCCGATCATAGCGTCCGTATCCGAGCACCAGCCGACGACGTGGTCTTCATTTTTCTTCGATCTGCACGTGCTCGTGTGCACGTTCCCGGTCGGTCTGTGGTACTGCATCAAGAATGTGAATGATGAGAGAGTTTTCGTTGCTCTGTATGCCCTGAGTGCGGTGTATTTCGCCGGTGTGATGGTTCGTTTGATGTTGACCCTGACGCCCGTAGTGTGCGTGCTAGCCGGCATTGCCTTTTCCATTCTTCTAGACTTGGCCTTAAGAGAGGACGAAGTGCCTGAACAATCCCCGGACAGTGAAGAATCTAAGAGTCTCTATGATAAAGCCGGCAAGGTAAAGAAGCGCACACTTGAGGCCGCGCCGAATGCGGACACCGGCCTGGGCATGAACGTGCGCTCGGGAACGCTCATAGCCTTCATGATCCTGCTGATGTTGTTCTCTGTGCACTGCACCTGGGCCACGTCTAACGCTTACTCCAGCCCTAGCATCGTTCTGGCCAGCTACGGCAATGACGGGTCGCGTAAAATCTTAGATGACTTCCGAGAAGCCTACGGTTGGTTATCGCAGAATACAGCAGAAGACGCAAGGATTATGTCTTGGTGGGACTACGGGTATCAGATAGCGGGGATGGGTAACAGAACAACCCTGGTGGACAATAACACCTGGAACAACTCCCACATAGCACTGGTCGGGAAGGCGATGGCGAGCAACGAATCCGCTGCCTACAGCATCATGACGATGCTGGACGTTGATTACGTGCTCGTTATATTCGGGGGCGCGATCGGGTACTCCGGAGACGACATCAACAAGTTCATATGGATGGTCAGGATCGCTGAGGGGGAACATCCTAAGGACATACACGAAGTTGACTATTTTACTGAAAGAGGAGAATACAGGATCGACTCTGAAGGATCAAAAACTATGTTGAACTGTTTGATGTACAAACTCTCGTATTATAGGTACGACAGTGGGGGAAGCCCTCCCGGGTACGACCGTACGCGCAGTGCGCTGCCCGGGAACAGAGGGTTCAAACTTACCTACCTCGAGGAAGCCTACACCACCGAGCACTGGCTCGTCAGGATATACAGGGTGAAAAAGCCATCTGAGTTCAATCGTCCGCGTTTGTCACTAGCAAAAAGGAAAATTTCAACAAGCAATACTATTTCTAAGAAGACTTCAAGAAGAAGAAAAGGCGCATTGAAGAACAAACCTACAGTCGTGAAGGGAAAAAAGGTCGGTAAACTGGAGTGA

Protein

MPSTTETLPSNGRSKGLFQNTAGLSTLITVTVLTLAWLAGFASRLFAVIRFESIIHEFDPWFNYRSTAYMVQHGFYNFLNWFDERAWYPLGRIVGGTVYPGLMITSGTIHWILHALNIPIHIRDICVFLAPVFSGLTAIATYLLTSELWSRGAGLFAACFIAIVPGYSSRSVAGSYDNEGIAIFALQFTYYLWLKSVKSGSVFWSICTALSYFYMVSAWGGYVFIINLIPLHVFVLLIMGRFSQRLFVSYSVFYIIGLLLSMQIPFVGFQPIRTSEHMAASGVFALLMAIGALKYLHSLNPKGQWKQLLILGGMLAAGLVFLAVVLLTYMGVIAPWSGRFYSLWDTAYAKIHIPIIASVSEHQPTTWSSFFFDLHVLVCTFPVGLWYCIKNVNDERVFVALYALSAVYFAGVMVRLMLTLTPVVCVLAGIAFSILLDLALREDEVPEQSPDSEESKSLYDKAGKVKKRTLEAAPNADTGLGMNVRSGTLIAFMILLMLFSVHCTWATSNAYSSPSIVLASYGNDGSRKILDDFREAYGWLSQNTAEDARIMSWWDYGYQIAGMGNRTTLVDNNTWNNSHIALVGKAMASNESAAYSIMTMLDVDYVLVIFGGAIGYSGDDINKFIWMVRIAEGEHPKDIHEVDYFTERGEYRIDSEGSKTMLNCLMYKLSYYRYDSGGSPPGYDRTRSALPGNRGFKLTYLEEAYTTEHWLVRIYRVKKPSEFNRPRLSLAKRKISTSNTISKKTSRRRKGALKNKPTVVKGKKVGKLE

Uniprot

H9J5V8   A0A3S2LUY1   A0A194RLG9   A0A194PGR0   A0A212EVS0   D6WTB5   + More
A0A1B6C951   A0A1B6E412   A0A0S1NJ98   A0A1B6ET97   A0A1B6LG56   A0A1Y1KLK0   K7J1J4   T1I1G9   A0A336M250   A0A0C9R4U4   A0A182JX76   A0A084W1P3   T1PCS9   E2BFZ0   A0A182FL27   A0A1I8MZ91   W8BT95   A0A1Q3FA26   A0A1J1HJ00   A0A026W564   A0A182PA64   A0A182VX60   A0A182GX30   A0A1W4WG99   A0A0N7ZB71   A0A1W4VLR4   A0A0P4WHQ0   B3P6S9   A0A1L8E1Q5   T1DE03   Q17H36   A0A0A9YAQ8   A0A182NA89   A0A2J7R6P5   A0A067QZL7   A0A1I8NNY0   Q9XZ53   B0WNG3   A0A182J1N9   B4PUE5   A0A0K8WJA0   Q7KN63   E2AG81   A0A1Y9HEA9   B3M1Y5   B4IJF1   A0A1Y9J0I6   A0A0L0CCK5   B4JHS0   E0VV86   A0A182QMB9   E9G1S7   A0A182V7H2   A0A182TEE4   Q7QC12   B4LVQ7   U5EI98   A0A182YKH9   A0A1Y9GKN6   A0A182MW20   B4KBG0   B4NJU9   W5J714   A0A340U080   A0A158NCA4   A0A2M3ZE38   A0A2M3ZZW8   A0A2M4BEI2   A0A1A9VM30   A0A1B0CBT8   A0A1A9Y7H2   A0A1B0AKG5   A0A3B0JLV9   B4GE31   B5DU70   A0A1A9W2P2   V9IGH0   F4X834   A0A0M4EWI6   A0A2A3ERQ7   A0A232FJ25   A0A2P2I172   T1J0C4   A0A224XK83   A0A2H8TWJ0   A0A2S2Q9R1   J9JV03   A0A2I9LP13   A0A293LZ14   A0A0L7QM50   A0A2R5L6K1   A0A0J7KTS4   A0A1Z5KVP6   E9JCU0  

Pubmed

19121390    26354079    22118469    18362917    19820115    28004739    + More
20075255    24438588    20798317    25315136    24495485    24508170    30249741    26483478    17994087    24330624    17510324    25401762    24845553    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    17550304    26108605    20566863    21292972    12364791    14747013    17210077    25244985    20920257    23761445    21347285    15632085    21719571    28648823    29248469    28528879    21282665   

EMBL

BABH01030048    RSAL01000006    RVE54323.1    KQ460045    KPJ18264.1    KQ459604    + More
KPI92228.1    AGBW02012127    OWR45595.1    KQ971352    EFA06314.1    GEDC01027272    JAS10026.1    GEDC01004622    JAS32676.1    KT362368    ALL54974.1    GECZ01028593    GECZ01023734    GECZ01021305    GECZ01019067    GECZ01018073    GECZ01011846    GECZ01008984    JAS41176.1    JAS46035.1    JAS48464.1    JAS50702.1    JAS51696.1    JAS57923.1    JAS60785.1    GEBQ01017296    JAT22681.1    GEZM01080230    JAV62283.1    ACPB03016273    UFQT01000309    SSX23079.1    GBYB01002990    JAG72757.1    ATLV01019399    KE525269    KFB44137.1    KA646561    AFP61190.1    GL448096    EFN85392.1    GAMC01004143    JAC02413.1    GFDL01010692    JAV24353.1    CVRI01000006    CRK87989.1    KK107405    QOIP01000014    EZA51220.1    RLU14762.1    JXUM01094529    JXUM01094530    JXUM01094531    JXUM01094532    JXUM01094533    JXUM01094534    JXUM01094535    KQ564135    KXJ72708.1    GDRN01088576    JAI60832.1    GDRN01088577    JAI60831.1    CH954182    EDV53749.1    GFDF01001582    JAV12502.1    GALA01001242    JAA93610.1    CH477253    EAT45977.1    GBHO01014888    GBHO01014886    JAG28716.1    JAG28718.1    NEVH01006756    PNF36504.1    KK853153    KDR10570.1    AE014297    AAF56391.1    DS232010    EDS31617.1    CM000160    EDW98832.1    GDHF01001165    JAI51149.1    AF132552    AAD27851.2    GL439266    EFN67572.1    CH902617    EDV42245.1    CH480848    EDW51142.1    JRES01000595    KNC29985.1    CH916369    EDV93909.1    DS235804    EEB17292.1    AXCN02000218    GL732529    EFX86763.1    AAAB01008859    EAA08102.4    CH940650    EDW66480.1    GANO01002714    JAB57157.1    APCN01000421    AXCM01010392    CH933806    EDW13627.1    CH964272    EDW83951.1    ADMH02002130    ETN58574.1    CCAG010012076    ADTU01011776    GGFM01005990    MBW26741.1    GGFK01000679    MBW34000.1    GGFJ01002319    MBW51460.1    AJWK01005824    JXJN01025262    OUUW01000007    SPP83247.1    CH479182    EDW33866.1    CH672826    EDY71890.1    JR046220    AEY60155.1    GL888912    EGI57383.1    CP012526    ALC47917.1    KZ288194    PBC33809.1    NNAY01000155    OXU30479.1    IACF01002106    LAB67774.1    JH431734    GFTR01007873    JAW08553.1    GFXV01006812    MBW18617.1    GGMS01005275    MBY74478.1    ABLF02016087    GFWZ01000137    MBW20127.1    GFWV01008362    MAA33091.1    KQ414894    KOC59692.1    GGLE01000977    MBY05103.1    LBMM01003343    KMQ93634.1    GFJQ02007922    JAV99047.1    GL771864    EFZ09359.1   

Proteomes

UP000005204    UP000283053    UP000053240    UP000053268    UP000007151    UP000007266    + More
UP000002358    UP000015103    UP000075881    UP000030765    UP000008237    UP000069272    UP000095301    UP000183832    UP000053097    UP000279307    UP000075885    UP000075920    UP000069940    UP000249989    UP000192223    UP000192221    UP000008711    UP000008820    UP000075884    UP000235965    UP000027135    UP000095300    UP000000803    UP000002320    UP000075880    UP000002282    UP000000311    UP000075900    UP000007801    UP000001292    UP000076407    UP000037069    UP000001070    UP000009046    UP000075886    UP000000305    UP000075903    UP000075902    UP000007062    UP000008792    UP000076408    UP000075840    UP000075883    UP000009192    UP000007798    UP000000673    UP000092444    UP000005205    UP000078200    UP000092461    UP000092443    UP000092460    UP000268350    UP000008744    UP000001819    UP000091820    UP000007755    UP000092553    UP000242457    UP000215335    UP000007819    UP000053825    UP000036403   

PRIDE

H9J5V8    Q9XZ53    Q7KN63   

Pfam

PF02516   STT3        + More
PF00710   Asparaginase
PF12796   Ank_2
PF17763   Asparaginase_C
PF16003   DUF4776
PF00293   NUDIX

Interpro

IPR003674   Oligo_trans_STT3        + More
IPR002110   Ankyrin_rpt       
IPR027475   Asparaginase/glutaminase_AS2       
IPR006033   AsnA_fam       
IPR041725   L-asparaginase_I       
IPR040919   Asparaginase_C       
IPR027473   L-asparaginase_C       
IPR027474   L-asparaginase_N       
IPR037152   L-asparaginase_N_sf       
IPR036152   Asp/glu_Ase-like_sf       
IPR020683   Ankyrin_rpt-contain_dom       
IPR006034   Asparaginase/glutaminase-like       
IPR036770   Ankyrin_rpt-contain_sf       
IPR031949   DUF4776       
IPR000086   NUDIX_hydrolase_dom       
IPR011876   IsopentenylPP_isomerase_typ1       
IPR015797   NUDIX_hydrolase-like_dom_sf       

SUPFAM

SSF48403   SSF48403        + More
SSF53774   SSF53774       
SSF55811   SSF55811       

Gene 3D

1.25.40.20     3.40.50.1170     3.40.50.40    

CDD

cd08963  L-asparaginase_I
cd00204  ANK
cd02885  IPP_Isomerase

ProteinModelPortal

H9J5V8   A0A3S2LUY1   A0A194RLG9   A0A194PGR0   A0A212EVS0   D6WTB5   + More
A0A1B6C951   A0A1B6E412   A0A0S1NJ98   A0A1B6ET97   A0A1B6LG56   A0A1Y1KLK0   K7J1J4   T1I1G9   A0A336M250   A0A0C9R4U4   A0A182JX76   A0A084W1P3   T1PCS9   E2BFZ0   A0A182FL27   A0A1I8MZ91   W8BT95   A0A1Q3FA26   A0A1J1HJ00   A0A026W564   A0A182PA64   A0A182VX60   A0A182GX30   A0A1W4WG99   A0A0N7ZB71   A0A1W4VLR4   A0A0P4WHQ0   B3P6S9   A0A1L8E1Q5   T1DE03   Q17H36   A0A0A9YAQ8   A0A182NA89   A0A2J7R6P5   A0A067QZL7   A0A1I8NNY0   Q9XZ53   B0WNG3   A0A182J1N9   B4PUE5   A0A0K8WJA0   Q7KN63   E2AG81   A0A1Y9HEA9   B3M1Y5   B4IJF1   A0A1Y9J0I6   A0A0L0CCK5   B4JHS0   E0VV86   A0A182QMB9   E9G1S7   A0A182V7H2   A0A182TEE4   Q7QC12   B4LVQ7   U5EI98   A0A182YKH9   A0A1Y9GKN6   A0A182MW20   B4KBG0   B4NJU9   W5J714   A0A340U080   A0A158NCA4   A0A2M3ZE38   A0A2M3ZZW8   A0A2M4BEI2   A0A1A9VM30   A0A1B0CBT8   A0A1A9Y7H2   A0A1B0AKG5   A0A3B0JLV9   B4GE31   B5DU70   A0A1A9W2P2   V9IGH0   F4X834   A0A0M4EWI6   A0A2A3ERQ7   A0A232FJ25   A0A2P2I172   T1J0C4   A0A224XK83   A0A2H8TWJ0   A0A2S2Q9R1   J9JV03   A0A2I9LP13   A0A293LZ14   A0A0L7QM50   A0A2R5L6K1   A0A0J7KTS4   A0A1Z5KVP6   E9JCU0  

PDB

6FTI     E-value=0,     Score=2011

KEGG

101742247    K07151 dolichyl-diphosphooligosaccharide---protein glycosyltransferase [EC:2.4.99.18] | (RefSeq) dol

PATHWAY

00510    N-Glycan biosynthesis - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)
04141    Protein processing in endoplasmic reticulum - Bombyx mori (domestic silkworm)

GO

GO:0016021   GO:0006486   GO:0004576   GO:0004579   GO:0008250   GO:0043687   GO:0018279   GO:0006520   GO:0004067   GO:0012505   GO:0016787   GO:0008299   GO:0004452   GO:0016020   GO:0006412   GO:0005515   GO:0000166   GO:0003677   GO:0008408   GO:0005112   GO:0015930  

Length:

769

Number of predicted TMHs:

13

Exp number of AAs in TMHs:

285.696109999999

Exp number, first 60 AAs:

22.14802

Total prob of N-in:

0.73231

POSSIBLE N-term signal

sequence

inside

1  -  20

TMhelix

21  -  43

outside

44  -  90

TMhelix

91  -  113

inside

114  -  124

TMhelix

125  -  144

outside

145  -  147

TMhelix

148  -  170

inside

171  -  190

TMhelix

191  -  213

outside

214  -  217

TMhelix

218  -  240

inside

241  -  246

TMhelix

247  -  269

outside

270  -  278

TMhelix

279  -  296

inside

297  -  307

TMhelix

308  -  330

outside

331  -  366

TMhelix

367  -  389

inside

390  -  395

TMhelix

396  -  414

outside

415  -  417

TMhelix

418  -  440

inside

441  -  485

TMhelix

486  -  508

outside

509  -  769

 

 

Pi

288.752573

Theta

205.669301

Tajima's D

0.665528

CLR

0.66621

CSRT

0.565521723913804

Interpretation

Uncertain