SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15097
Pre Gene Modal
BGIBMGA004896
Annotation
PREDICTED:_uncharacterized_protein_LOC106129641_[Amyelois_transitella]
Location
Bomo_Chr25(+):4799177-4805784      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.197
 

Sequence

CDS
ATGCTTATATCAGATGGTATAAACCACGGGAAATTACAATCAATAATTCTTGGTGAACTGAAAAAAGCAGGTCTTAAGCATCGTCTAAAGAAGATAATTCTTAAAAATATCAAAGATAACAAGACGGTGTTTGGAGCACCATTGCTGAAAGTTCCATCATGCAGTGTTATATGCTGTGGCAGTACACTAAGTGTACCCCAGATTGTGACCGAAATGTCCTCAGTGCTTCGAGCTAATGCACATATAGAAGGCTTATTCCGAAAAGCGGGATCACAGTCACGTCAAAAGGATATCAAGCGTTTATTAGATGCTGGAGGATGCGTCTCTGATGGGCATCATCCAATTGATGTGGCAAGTGTATTGAAACTTTACTTAAGATGTCTACCTGAGCCTCTCATCAGTGCTGAAGTCCAAGACTTATTATTGCGATGTCGTCTTACTGCTGGTGATGAGGCTCTTAAACCTATCCTGCACACATTACTATTACTGCCAGTATTACATGTTCATCTCCTTCACTATGTTATGGAGTTATTAAACTATATTGCATCAAACCATAAACAAAATTTAATGGACTCATCAAACCTGGCTATAGTAATGGCACCTAGTATTATGCCATTACCAGCTTCTGCTTCCACACAGAGATTGGAACATCATGTGGCACTTGTTAAGATGTTCATTGAAAACTCTCAACACATAGGGTTACTAACGGAAGATCTAATGATGCAATTGGATGATGACTCTGCAATTTATAGAGCTAGAAGAAAAAAAAGACGTAGTGGGTCTCTTAACCGAATGATTTCTGGGCTACGCAAAATGGTGTCCAGTAGCGTGCACACTCCCGCAACGGTACGAGAAAGCGGTAAAACTCCAATTCTAAGCAAGTCTGCTTCGAAACGGAAGTGCGATAATTATGAGGGACTGTCTGCAAAAACGAGGAAAGACATAACCAATGGACTACCTCAAAAGGAATTAGCTTTTACACCCATGAAGATGGGAATCGAGAGGAAAAGACTGCGGCTAAGCTTAATGGACGCTAGGAGTACACCTATTATAAACTCAGATTTCAGCTCACATAAAAATTCAGAAACCAGTATTAGTAGCGAGGACTTGTTGACATCCACCGAACATTTGTTCAGTGCTCACAACACGATCGATTTATCACCGGACATGAAACAAGAGAAAGATTACGTCAGAATTTCCAAACAAGAATATGAGGAAATCAAAAGTAGAGTTTCCGCCATCGAGAACAGACTCTCAAGGGAATTCACTGATGCAATACAGCCACGTATACAACCTTTACAGCAAGTACAGAATGTGTATGAACAAACTCTGGAAGAAGTAGCAATGCTTCATTGTCCCAGTTCAGATAATTTAGCTCGTAGATTAAGCAAGGAGCTTAAAATTCGACCCACAGAAGAAGCCAAAATTATACGGTCCCCGAGTGCTAGGAAAATAGGCTCAATACGAAGACGATCGAAAGAAAACCTTACAAAAATAGTGAGGCACAAATCTTGGAATGTGCCTTCACAGTCTCAAGCTAGTCACGTCACCGATAGGTTTTATCCTTACATCGGTCTGAGTCGTCAAAGAACGAAAAGTGCCAAACCCGCAAAAACGACGCCAAAAATTAAAATCACTGATTGGGAGGAATCTGACAACTCATTCAATAATACTTCTGACAGTAGTAAAAAATATCATCTCAGGAAACGGACCAGTCTTGCTCCAGATTATAATCGAGAAAAACCTGTTAGTAAAATTCAAGCTCGAAGATCATTAAATTTAACAAGCAATAATAGTTTTGAAAATACGCTTTCGGAAACTTCGTTGAATAATTCGCATGATTCTAGCGGAAAGTCGAATAGCTTAGAACAGAGGCCCTGTTATCAAAACGTGGTCGATCGAAACACACACAAATATGCTAAAAAGAGTCCAATACAGCAGAAATGGCGAAGCGCAGCCGCTTTCTTCATGAACAAGACCGGCGAAGTTGACAGCTCTGGGACGACGGGAAGGCCGTCCGTGAACAAACTCAGGCGGCAAAACGCCGGAGCAGTTCTTGCGAAAGCAAAATTATTCGAATCTAGTTCTGATAAATCATCTGAACGAAATGAAAAAGTTGCCAATATCGGCTTTGCGAGGCGTCCCAGGGTTAGTGGTCAACAACCGATAAGAACCCAAAAAGCTGTCGCTCTTGTTAGGCCTAAGATGCATGGCAGTGAGGAACCCATCACACCTGTGAAAAGTATTAAGAATATACCCGCTGCGCCGTTTGTGCCTACCAAGTCTTCACTATATAATGAATGGAGAACAAATAAGATGTCATCGCCAATCAAGAAAGTAACTTCTCCTCAAACGAATGCGGCAAACTTTACGTGTAGAACTCCACAAATACCAACCCTAAAAAAGTCTCTCATTACCAGTAAAACTACAAGAACTATTGTCCAGTCTGCAGATGGAAAGAAGTCCAATACCCCGATGAAAGCAGTACATGTATCACCTAAAAGAAGATCACCGCGACAAAAACTCCAACGAACATACAATTAA
Protein
MLISDGINHGKLQSIILGELKKAGLKHRLKKIILKNIKDNKTVFGAPLLKVPSCSVICCGSTLSVPQIVTEMSSVLRANAHIEGLFRKAGSQSRQKDIKRLLDAGGCVSDGHHPIDVASVLKLYLRCLPEPLISAEVQDLLLRCRLTAGDEALKPILHTLLLLPVLHVHLLHYVMELLNYIASNHKQNLMDSSNLAIVMAPSIMPLPASASTQRLEHHVALVKMFIENSQHIGLLTEDLMMQLDDDSAIYRARRKKRRSGSLNRMISGLRKMVSSSVHTPATVRESGKTPILSKSASKRKCDNYEGLSAKTRKDITNGLPQKELAFTPMKMGIERKRLRLSLMDARSTPIINSDFSSHKNSETSISSEDLLTSTEHLFSAHNTIDLSPDMKQEKDYVRISKQEYEEIKSRVSAIENRLSREFTDAIQPRIQPLQQVQNVYEQTLEEVAMLHCPSSDNLARRLSKELKIRPTEEAKIIRSPSARKIGSIRRRSKENLTKIVRHKSWNVPSQSQASHVTDRFYPYIGLSRQRTKSAKPAKTTPKIKITDWEESDNSFNNTSDSSKKYHLRKRTSLAPDYNREKPVSKIQARRSLNLTSNNSFENTLSETSLNNSHDSSGKSNSLEQRPCYQNVVDRNTHKYAKKSPIQQKWRSAAAFFMNKTGEVDSSGTTGRPSVNKLRRQNAGAVLAKAKLFESSSDKSSERNEKVANIGFARRPRVSGQQPIRTQKAVALVRPKMHGSEEPITPVKSIKNIPAAPFVPTKSSLYNEWRTNKMSSPIKKVTSPQTNAANFTCRTPQIPTLKKSLITSKTTRTIVQSADGKKSNTPMKAVHVSPKRRSPRQKLQRTYN

Summary

Uniprot
H9J5V6   A0A2A4JB69   A0A3S2KYJ9   A0A194RKB2   A0A194PHN0   A0A212ER60   + More
A0A2H1VRK3   A0A182R379   A0A182PAG8   A0A336MT93   A0A336KXF7  
Pubmed
19121390    26354079    22118469   
EMBL
BABH01030048    NWSH01002042    PCG69325.1    RSAL01000517    RVE41487.1    KQ460045    + More
KPJ18268.1    KQ459604    KPI92224.1    AGBW02013098    OWR43983.1    ODYU01004018    SOQ43465.1    UFQT01002611    SSX33764.1    UFQS01001300    UFQT01001300    SSX10179.1    SSX29900.1   
Proteomes
UP000005204    UP000218220    UP000283053    UP000053240    UP000053268    UP000007151    + More
UP000075900    UP000075885   
PRIDE
H9J5V6   
Pfam
PF00620   RhoGAP
Interpro
IPR008936   Rho_GTPase_activation_prot        + More
IPR000198   RhoGAP_dom       
SUPFAM
SSF48350   SSF48350       
Gene 3D
1.10.555.10    
ProteinModelPortal
H9J5V6   A0A2A4JB69   A0A3S2KYJ9   A0A194RKB2   A0A194PHN0   A0A212ER60   + More
A0A2H1VRK3   A0A182R379   A0A182PAG8   A0A336MT93   A0A336KXF7  
PDB
3EAP     E-value=2.29043e-15,     Score=204

Ontologies

KEGG
101742778    K20635 Rho GTPase-activating protein 11 | (RefSeq) rho GTPase-activating protein 11A-like
GO
GO:0007165   GO:0008270   GO:0005840   GO:0006412   GO:0005515   GO:0000166   GO:0003677   GO:0008408   GO:0005112   GO:0015930  

Topology

Length:
847
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.1895
Exp number, first 60 AAs:
0.042
Total prob of N-in:
0.00569
outside
1  -  847
 
 

Population Genetic Test Statistics

Pi
228.128091
Theta
172.947398
Tajima's D
0.803124
CLR
0.041629
CSRT
0.605519724013799
Interpretation
Uncertain
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