Gene

KWMTBOMO15094  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004834

Annotation

RRP15-like_protein_[Operophtera_brumata]

Location

Bomo_Chr25(+):4786857-4789016      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.891

CDS

ATGGTAGTGGTAGAAAAAATGAAGTCAGTTTTAAAAGTTTCAGTTTCAGATACAGAATCAAGTGTCGAAGAATCTAGTGATAGTGAGAATGAGTCTGTTACTAATAATGAAGTCGATGAAAACCCGGAAGCAGATTTCAAAAGCTCTAAATCAGATTCAGAGGAAGAGAATCGCCTTTTAGCAAACGAAGGCTGGGCGGATTCAATCTCAAAAATTTTAGGTTCCAGCAAACCCAAGAATAAAAAAACATTAGTCTTATCTAGGGCCAAAAAGCATTCAGAAATAGTAAAAAAAGAAAAAGAAGAGAAGCCAAGTTTTGAAGTTATAGGTGAAGTGAATGAAATTGAATCAAAAGTCAAGAAGGAAGAGATTAATGTAGAACCACCAGCTAAGAAAGTGAAACATGAAAAACCATCAATAAGAATTAAGCCAAACATCTTAGAAAAGGACAGAGAAAGATTATTGAATAAAATAGCCACTAAAGGTGTAGTACAATTATTCAATGCAGTAAGAAATCAACAAAAATCTATAGAGAAAGAAATGGATCGGAATGACTTGTCTGAAGGAAAGAAAGAAAAGATTTTGAAAAAATTTGATAAGAGAACTTTCTTGGATACCCTTATGGGACAGAGTAAATCAATAGTTGTTGATGAACATGTAAAAAGCTTAAAAGATGAAGTTAAAGATGAAACTGACAGACCCAAATGGAATGCTTTAAGAGATGACTTTATGATGGGAGCCAAAATGAAAGATTGGGACAAAGAATCAGTCGATGAATGA

Protein

MVVVEKMKSVLKVSVSDTESSVEESSDSENESVTNNEVDENPEADFKSSKSDSEEENRLLANEGWADSISKILGSSKPKNKKTLVLSRAKKHSEIVKKEKEEKPSFEVIGEVNEIESKVKKEEINVEPPAKKVKHEKPSIRIKPNILEKDRERLLNKIATKGVVQLFNAVRNQQKSIEKEMDRNDLSEGKKEKILKKFDKRTFLDTLMGQSKSIVVDEHVKSLKDEVKDETDRPKWNALRDDFMMGAKMKDWDKESVDE

Uniprot

H9J5P4   A0A2A4JB45   A0A2H1X080   A0A0L7L0W9   S4NSW0   A0A194PG02   + More
A0A1E1WIB7   A0A212ER76   A0A194RLS8   D6WP55   A0A1W4XQF6   V5GXI2   A0A2J7R6Q6   A0A2J7R6N0   A0A0C9QLD3   E2ALU4   A0A1Y1KJ07   A0A026WV35   E2BV83   A0A0J7L6W1   A0A158NI40   A0A151WJZ6   A0A195B716   A0A195EFS3   N6TPV9   A0A195CQR3   U4U8S6   A0A1B6GP94   F4WGD7   A0A2J7R6N4   A0A195F0R4   A0A067QMA7   A0A2A3EH99   K7J486   A0A232F3P5   A0A1B6L4B1   A0A0M8ZVJ2   A0A1A9V659   A0A1B6CV65   A0A088AFX3   A0A1A9ZY46   A0A1B0EWY8   A0A1B0BF49   D3TPA8   A0A1A9X8M0   A0A154PIA4   A0A1I8PZR1   A0A1B0GDT9   A0A1L8DR44   A0A1L8DRF3   A0A1A9X447   T1JA25   A0A0A1XQX4   A0A0K8W5H0   T1PLN0   A0A1I8NBF1   A0A1I8NBD5   A0A034WM02   E9IBB1   W8C5D7   E0V926   A0A0L0C7D1   A0A2P8XWQ1   A0A1S3JM81   A0A1S3JM43   A0A1W2WHB2   B0X4Q9   J9JK30   C1C024   U3IDN6   R0KF54   A0A0K8TNF2   C4WTZ7   A0A336K219   G1KQF4   A0A2D0RMJ9   D3PJV9   A0A2D0RMI9   A0A3B0JMQ4   A0A2D0RP39   A0A3Q2X8G3   A0A0P7XLT1   A0A3B4XPP3   A0A1W5AHM6   A0A2H8TJE6   A0A099ZCK4   A0A3Q3W3L8   C1C2K4   H2T9I3   A0A1Z5KWV9   B3P3Q2   A0A091I373   B4NIR1   A0A3P8VQN6   U3KCJ8   H0YX98   H2XX34  

Pubmed

19121390    26227816    23622113    26354079    22118469    18362917    + More
19820115    20798317    28004739    24508170    30249741    21347285    23537049    21719571    24845553    20075255    28648823    20353571    25830018    25315136    25348373    21282665    24495485    20566863    26108605    29403074    23749191    26369729    21551351    28528879    17994087    24487278    20360741    12481130    15114417   

EMBL

BABH01024941    BABH01024942    NWSH01002042    PCG69327.1    ODYU01011986    SOQ58044.1    + More
JTDY01003823    KOB68956.1    GAIX01012411    JAA80149.1    KQ459604    KPI92222.1    GDQN01004443    JAT86611.1    AGBW02013098    OWR43985.1    KQ460045    KPJ18270.1    KQ971352    EFA07263.2    GALX01001989    JAB66477.1    NEVH01006756    PNF36496.1    PNF36493.1    GBYB01004334    JAG74101.1    GL440629    EFN65614.1    GEZM01087315    JAV58777.1    KK107111    QOIP01000011    EZA58964.1    RLU16606.1    GL450824    EFN80375.1    LBMM01000451    KMQ98313.1    ADTU01016264    KQ983039    KYQ48015.1    KQ976579    KYM79989.1    KQ978957    KYN27093.1    APGK01025891    KB740605    ENN80038.1    KQ977481    KYN02449.1    KB632095    ERL88758.1    GECZ01005528    JAS64241.1    GL888128    EGI66904.1    PNF36495.1    KQ981897    KYN33747.1    KK853153    KDR10562.1    KZ288254    PBC30844.1    AAZX01003261    NNAY01001043    OXU25371.1    GEBQ01021506    JAT18471.1    KQ435863    KOX70409.1    GEDC01020175    JAS17123.1    AJVK01013103    JXJN01013288    EZ423260    ADD19536.1    KQ434905    KZC11224.1    CCAG010012025    GFDF01005126    JAV08958.1    GFDF01005127    JAV08957.1    JH431981    GBXI01001319    JAD12973.1    GDHF01006025    JAI46289.1    KA648843    AFP63472.1    GAKP01004159    GAKP01004158    JAC54793.1    GL762111    EFZ22172.1    GAMC01001817    JAC04739.1    DS234988    EEB09882.1    JRES01000819    KNC28151.1    PYGN01001234    PSN36427.1    DS232350    EDS40476.1    ABLF02025028    ABLF02025031    BT080203    ACO14627.1    ADON01004094    KB742430    EOB08707.1    GDAI01002143    JAI15460.1    AK340837    BAH71367.1    UFQS01000046    UFQT01000046    SSW98507.1    SSX18893.1    BT121915    HACA01001195    ADD38845.1    CDW18556.1    OUUW01000007    SPP83517.1    JARO02000670    KPP77776.1    GFXV01002430    MBW14235.1    KL891152    KGL78555.1    BT081083    ACO15507.1    GFJQ02007445    JAV99524.1    CH954181    EDV48940.1    KL218170    KFP03004.1    CH964272    EDW83775.1    AGTO01000267    ABQF01123401    EAAA01002084   

Proteomes

UP000005204    UP000218220    UP000037510    UP000053268    UP000007151    UP000053240    + More
UP000007266    UP000192223    UP000235965    UP000000311    UP000053097    UP000279307    UP000008237    UP000036403    UP000005205    UP000075809    UP000078540    UP000078492    UP000019118    UP000078542    UP000030742    UP000007755    UP000078541    UP000027135    UP000242457    UP000002358    UP000215335    UP000053105    UP000078200    UP000005203    UP000092445    UP000092462    UP000092460    UP000092443    UP000076502    UP000095300    UP000092444    UP000091820    UP000095301    UP000009046    UP000037069    UP000245037    UP000085678    UP000002320    UP000007819    UP000016666    UP000001646    UP000221080    UP000268350    UP000264820    UP000034805    UP000261360    UP000192224    UP000053641    UP000261620    UP000005226    UP000008711    UP000054308    UP000007798    UP000265120    UP000016665    UP000007754    UP000008144   

PRIDE

H9J5P4   

Pfam

PF07890   Rrp15p        + More
PF00730   HhH-GPD
PF07934   OGG_N
PF08737   Rgp1
PF15055   DUF4536

Interpro

IPR012459   Rrp15        + More
IPR011257   DNA_glycosylase       
IPR012904   OGG_N       
IPR023170   HTH_base_excis_C       
IPR003265   HhH-GPD_domain       
IPR028036   DUF4536       
IPR014848   Rgp1       

SUPFAM

SSF48150   SSF48150       

Gene 3D

1.10.1670.10    

CDD

cd00056  ENDO3c

ProteinModelPortal

H9J5P4   A0A2A4JB45   A0A2H1X080   A0A0L7L0W9   S4NSW0   A0A194PG02   + More
A0A1E1WIB7   A0A212ER76   A0A194RLS8   D6WP55   A0A1W4XQF6   V5GXI2   A0A2J7R6Q6   A0A2J7R6N0   A0A0C9QLD3   E2ALU4   A0A1Y1KJ07   A0A026WV35   E2BV83   A0A0J7L6W1   A0A158NI40   A0A151WJZ6   A0A195B716   A0A195EFS3   N6TPV9   A0A195CQR3   U4U8S6   A0A1B6GP94   F4WGD7   A0A2J7R6N4   A0A195F0R4   A0A067QMA7   A0A2A3EH99   K7J486   A0A232F3P5   A0A1B6L4B1   A0A0M8ZVJ2   A0A1A9V659   A0A1B6CV65   A0A088AFX3   A0A1A9ZY46   A0A1B0EWY8   A0A1B0BF49   D3TPA8   A0A1A9X8M0   A0A154PIA4   A0A1I8PZR1   A0A1B0GDT9   A0A1L8DR44   A0A1L8DRF3   A0A1A9X447   T1JA25   A0A0A1XQX4   A0A0K8W5H0   T1PLN0   A0A1I8NBF1   A0A1I8NBD5   A0A034WM02   E9IBB1   W8C5D7   E0V926   A0A0L0C7D1   A0A2P8XWQ1   A0A1S3JM81   A0A1S3JM43   A0A1W2WHB2   B0X4Q9   J9JK30   C1C024   U3IDN6   R0KF54   A0A0K8TNF2   C4WTZ7   A0A336K219   G1KQF4   A0A2D0RMJ9   D3PJV9   A0A2D0RMI9   A0A3B0JMQ4   A0A2D0RP39   A0A3Q2X8G3   A0A0P7XLT1   A0A3B4XPP3   A0A1W5AHM6   A0A2H8TJE6   A0A099ZCK4   A0A3Q3W3L8   C1C2K4   H2T9I3   A0A1Z5KWV9   B3P3Q2   A0A091I373   B4NIR1   A0A3P8VQN6   U3KCJ8   H0YX98   H2XX34  

KEGG

101739719    no KO assigned | (RefSeq) RRP15-like protein

GO

GO:0006364   GO:0030687   GO:0008534   GO:0003684   GO:0006289   GO:0006284   GO:0008270   GO:0005840   GO:0006412   GO:0005515   GO:0000166   GO:0003677   GO:0008408   GO:0005112   GO:0015930  

PANTHER

PTHR13245   PTHR12507  

Length:

259

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.07444

outside

1  -  259

 

 

Pi

209.614885

Theta

168.757886

Tajima's D

0.761508

CLR

0.141677

CSRT

0.588820558972051

Interpretation

Uncertain